Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:40:40 (785279): wrapper (7.7.26015): starting
08:40:40 (785279): wrapper: running run_atlas (--nthreads 3)
[2025-12-17 08:40:40] Arguments: --nthreads 3
[2025-12-17 08:40:40] Threads: 3
[2025-12-17 08:40:40] Checking for CVMFS
[2025-12-17 08:40:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-17 08:40:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-17 08:40:40] Running cvmfs_config stat atlas.cern.ch
[2025-12-17 08:40:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-17 08:40:40] 2.9.2.0 3520241 5463 84860 154104 0 57 13761140 36864000 0 130560 0 3853880 99.990 200044 18582 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-17 08:40:40] CVMFS is ok
[2025-12-17 08:40:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 08:40:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 08:40:40] Further information can be found at the LHC@home message board.
[2025-12-17 08:40:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 08:40:40] Checking for apptainer binary...
[2025-12-17 08:40:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-17 08:40:40] Running /usr/bin/apptainer --version
[2025-12-17 08:40:40] apptainer version 1.4.1-1.1
[2025-12-17 08:40:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 08:40:40] thA373
[2025-12-17 08:40:40] apptainer works
[2025-12-17 08:40:40] Set ATHENA_PROC_NUMBER=3
[2025-12-17 08:40:40] Set ATHENA_CORE_NUMBER=3
[2025-12-17 08:40:40] Starting ATLAS job with PandaID=6930759568
[2025-12-17 08:40:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 10:27:59]  *** The last 200 lines of the pilot log: ***
[2025-12-17 10:27:59] 2025-12-17 09:27:17,694 | INFO     | overall cleanup function is called
[2025-12-17 10:27:59] 2025-12-17 09:27:17,728 | INFO     | number of running child processes to parent process 795440: 1
[2025-12-17 10:27:59] 2025-12-17 09:27:17,728 | INFO     | maximum number of monitored processes: 6
[2025-12-17 10:27:59] 2025-12-17 09:27:17,728 | INFO     | aborting job monitoring since job object (job id=6930759568) has expired
[2025-12-17 10:27:59] 2025-12-17 09:27:18,701 | INFO     | --- collectZombieJob: --- 10, [795440]
[2025-12-17 10:27:59] 2025-12-17 09:27:18,701 | INFO     | zombie collector waiting for pid 795440
[2025-12-17 10:27:59] 2025-12-17 09:27:18,701 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 10:27:59] 2025-12-17 09:27:18,701 | INFO     | collected zombie processes
[2025-12-17 10:27:59] 2025-12-17 09:27:18,701 | INFO     | will attempt to kill all subprocesses of pid=795440
[2025-12-17 10:27:59] 2025-12-17 09:27:18,742 | INFO     | process IDs to be killed: [795440] (in reverse order)
[2025-12-17 10:27:59] 2025-12-17 09:27:18,766 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 10:27:59] 2025-12-17 09:27:18,766 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 10:27:59] 2025-12-17 09:27:18,768 | INFO     | did not find any defunct processes belonging to 795440
[2025-12-17 10:27:59] 2025-12-17 09:27:18,769 | INFO     | did not find any defunct processes belonging to 795440
[2025-12-17 10:27:59] 2025-12-17 09:27:18,769 | INFO     | ready for new job
[2025-12-17 10:27:59] 2025-12-17 09:27:18,769 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 10:27:59] 2025-12-17 09:27:18,770 | INFO     | ***************************************
[2025-12-17 10:27:59] 2025-12-17 09:27:18,770 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 10:27:59] 2025-12-17 09:27:18,770 | INFO     | ***************************************
[2025-12-17 10:27:59] 2025-12-17 09:27:18,770 | INFO     | 
[2025-12-17 10:27:59] 2025-12-17 09:27:18,770 | INFO     | architecture information:
[2025-12-17 10:27:59] 2025-12-17 09:27:18,770 | INFO     | executing command: cat /etc/os-release
[2025-12-17 10:27:59] 2025-12-17 09:27:18,778 | INFO     | cat /etc/os-release:
[2025-12-17 10:27:59] NAME="CentOS Linux"
[2025-12-17 10:27:59] VERSION="7 (Core)"
[2025-12-17 10:27:59] ID="centos"
[2025-12-17 10:27:59] ID_LIKE="rhel fedora"
[2025-12-17 10:27:59] VERSION_ID="7"
[2025-12-17 10:27:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 10:27:59] ANSI_COLOR="0;31"
[2025-12-17 10:27:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 10:27:59] HOME_URL="https://www.centos.org/"
[2025-12-17 10:27:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 10:27:59] 
[2025-12-17 10:27:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 10:27:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 10:27:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 10:27:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 10:27:59] 
[2025-12-17 10:27:59] 2025-12-17 09:27:18,779 | INFO     | ***************************************
[2025-12-17 10:27:59] 2025-12-17 09:27:19,282 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-17 10:27:59] 2025-12-17 09:27:19,295 | INFO     | sufficient remaining disk space (245540847616 B)
[2025-12-17 10:27:59] 2025-12-17 09:27:19,295 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 10:27:59] 2025-12-17 09:27:19,295 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 10:27:59] 2025-12-17 09:27:19,295 | INFO     | update_server=False
[2025-12-17 10:27:59] 2025-12-17 09:27:19,295 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 10:27:59] 2025-12-17 09:27:19,295 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 10:27:59] 2025-12-17 09:27:19,295 | INFO     | aborting loop
[2025-12-17 10:27:59] 2025-12-17 09:27:19,295 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 10:27:59] 2025-12-17 09:27:19,341 | INFO     | all job control threads have been joined
[2025-12-17 10:27:59] 2025-12-17 09:27:19,482 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 10:27:59] 2025-12-17 09:27:20,050 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 10:27:59] 2025-12-17 09:27:20,145 | INFO     | all data control threads have been joined
[2025-12-17 10:27:59] 2025-12-17 09:27:20,300 | INFO     | [job] job monitor thread has finished
[2025-12-17 10:27:59] 2025-12-17 09:27:20,300 | INFO     | [job] retrieve thread has finished
[2025-12-17 10:27:59] 2025-12-17 09:27:20,300 | INFO     | [job] queue monitor thread has finished
[2025-12-17 10:27:59] 2025-12-17 09:27:20,347 | INFO     | [job] control thread has finished
[2025-12-17 10:27:59] 2025-12-17 09:27:20,408 | INFO     | all payload control threads have been joined
[2025-12-17 10:27:59] 2025-12-17 09:27:20,460 | INFO     | [data] copytool_in thread has finished
[2025-12-17 10:27:59] 2025-12-17 09:27:20,487 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 10:27:59] 2025-12-17 09:27:21,014 | INFO     | [job] validate thread has finished
[2025-12-17 10:27:59] 2025-12-17 09:27:21,014 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 10:27:59] 2025-12-17 09:27:21,099 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 10:27:59] 2025-12-17 09:27:21,107 | INFO     | [payload] validate_post thread has finished
[2025-12-17 10:27:59] 2025-12-17 09:27:21,151 | INFO     | [data] control thread has finished
[2025-12-17 10:27:59] 2025-12-17 09:27:21,414 | INFO     | [payload] control thread has finished
[2025-12-17 10:27:59] 2025-12-17 09:27:21,627 | INFO     | [payload] failed_post thread has finished
[2025-12-17 10:27:59] 2025-12-17 09:27:22,056 | INFO     | [data] copytool_out thread has finished
[2025-12-17 10:27:59] 2025-12-17 09:27:23,489 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 10:27:59] 2025-12-17 09:27:29,732 | INFO     | job.realtimelogging is not enabled
[2025-12-17 10:27:59] 2025-12-17 09:27:30,738 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 10:27:59] 2025-12-17 09:27:48,008 | INFO     | 6392s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-17 10:27:59] 2025-12-17 09:27:49,066 | INFO     | PID=788997 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-17 10:27:59] 2025-12-17 09:27:49,066 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 10:27:59] 2025-12-17 09:27:49,066 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 10:27:59] 2025-12-17 09:27:49,066 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 10:27:59] 2025-12-17 09:27:53,179 | INFO     | [monitor] cgroup control has ended
[2025-12-17 10:27:59] 2025-12-17 09:27:54,073 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139791694088000)>', '<ExcThread(monitor, started 139791337232128)>']
[2025-12-17 10:27:59] 2025-12-17 09:27:54,093 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 10:27:59] 2025-12-17 09:27:54,093 | INFO     | [monitor] control thread has ended
[2025-12-17 10:27:59] 2025-12-17 09:27:59,099 | INFO     | all workflow threads have been joined
[2025-12-17 10:27:59] 2025-12-17 09:27:59,099 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 10:27:59] 2025-12-17 09:27:59,099 | INFO     | traces error code: 0
[2025-12-17 10:27:59] 2025-12-17 09:27:59,100 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 10:27:59] 2025-12-17 09:27:59,149 [wrapper] ==== pilot stdout END ====
[2025-12-17 10:27:59] 2025-12-17 09:27:59,151 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 10:27:59] 2025-12-17 09:27:59,154 [wrapper] pilotpid: 788997
[2025-12-17 10:27:59] 2025-12-17 09:27:59,156 [wrapper] Pilot exit status: 0
[2025-12-17 10:27:59] 2025-12-17 09:27:59,163 [wrapper] pandaids: 6930759568
[2025-12-17 10:27:59] 2025-12-17 09:27:59,179 [wrapper] cleanup supervisor_pilot  809774 788998
[2025-12-17 10:27:59] 2025-12-17 09:27:59,181 [wrapper] Test setup, not cleaning
[2025-12-17 10:27:59] 2025-12-17 09:27:59,183 [wrapper] apfmon messages muted
[2025-12-17 10:27:59] 2025-12-17 09:27:59,186 [wrapper] ==== wrapper stdout END ====
[2025-12-17 10:27:59] 2025-12-17 09:27:59,188 [wrapper] ==== wrapper stderr END ====
[2025-12-17 10:27:59]  *** Error codes and diagnostics ***
[2025-12-17 10:27:59]     "exeErrorCode": 0,
[2025-12-17 10:27:59]     "exeErrorDiag": "",
[2025-12-17 10:27:59]     "pilotErrorCode": 0,
[2025-12-17 10:27:59]     "pilotErrorDiag": "",
[2025-12-17 10:27:59]  *** Listing of results directory ***
[2025-12-17 10:27:59] total 405108
[2025-12-17 10:27:59] -rw-r--r-- 1 boinc boinc    579449 Dec 16 07:04 pilot3.tar.gz
[2025-12-17 10:27:59] -rwx------ 1 boinc boinc     36322 Dec 16 07:07 runpilot2-wrapper.sh
[2025-12-17 10:27:59] -rw-r--r-- 1 boinc boinc      5112 Dec 16 07:09 queuedata.json
[2025-12-17 10:27:59] -rw-r--r-- 1 boinc boinc       100 Dec 17 08:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 10:27:59] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 08:40 run_atlas
[2025-12-17 10:27:59] -rw-r--r-- 1 boinc boinc       105 Dec 17 08:40 job.xml
[2025-12-17 10:27:59] -rw-r--r-- 2 boinc boinc 214489431 Dec 17 08:40 EVNT.47898779._000182.pool.root.1
[2025-12-17 10:27:59] -rw-r--r-- 2 boinc boinc    592394 Dec 17 08:40 input.tar.gz
[2025-12-17 10:27:59] -rw-r--r-- 2 boinc boinc     15847 Dec 17 08:40 start_atlas.sh
[2025-12-17 10:27:59] drwxrwx--x 2 boinc boinc      4096 Dec 17 08:40 shared
[2025-12-17 10:27:59] -rw-r--r-- 1 boinc boinc         0 Dec 17 08:40 boinc_setup_complete
[2025-12-17 10:27:59] -rw-r--r-- 1 boinc boinc      6439 Dec 17 08:40 init_data.xml
[2025-12-17 10:27:59] -rw-r--r-- 1 boinc boinc         0 Dec 17 08:40 boinc_lockfile
[2025-12-17 10:27:59] -rw-r--r-- 1 boinc boinc      2523 Dec 17 08:40 pandaJob.out
[2025-12-17 10:27:59] -rw------- 1 boinc boinc    987409 Dec 17 08:40 agis_schedconf.cvmfs.json
[2025-12-17 10:27:59] -rw------- 1 boinc boinc   1516240 Dec 17 08:40 agis_ddmendpoints.agis.ALL.json
[2025-12-17 10:27:59] drwx------ 5 boinc boinc      4096 Dec 17 08:40 pilot3
[2025-12-17 10:27:59] -rw------- 1 boinc boinc 194017236 Dec 17 10:26 HITS.47898782._004480.pool.root.1
[2025-12-17 10:27:59] -rw-r--r-- 1 boinc boinc       529 Dec 17 10:26 boinc_task_state.xml
[2025-12-17 10:27:59] -rw------- 1 boinc boinc      1017 Dec 17 10:27 memory_monitor_summary.json
[2025-12-17 10:27:59] -rw------- 1 boinc boinc    288600 Dec 17 10:27 log.47898782._004480.job.log.tgz.1
[2025-12-17 10:27:59] -rw------- 1 boinc boinc        95 Dec 17 10:27 pilot_heartbeat.json
[2025-12-17 10:27:59] -rw------- 1 boinc boinc      7756 Dec 17 10:27 heartbeat.json
[2025-12-17 10:27:59] -rw-r--r-- 1 boinc boinc      8192 Dec 17 10:27 boinc_mmap_file
[2025-12-17 10:27:59] -rw-r--r-- 1 boinc boinc        27 Dec 17 10:27 wrapper_checkpoint.txt
[2025-12-17 10:27:59] -rw------- 1 boinc boinc      4938 Dec 17 10:27 pilotlog.txt
[2025-12-17 10:27:59] -rw------- 1 boinc boinc    925334 Dec 17 10:27 log.47898782._004480.job.log.1
[2025-12-17 10:27:59] -rw------- 1 boinc boinc       357 Dec 17 10:27 output.list
[2025-12-17 10:27:59] -rw-r--r-- 1 boinc boinc       620 Dec 17 10:27 runtime_log
[2025-12-17 10:27:59] -rw------- 1 boinc boinc   1228800 Dec 17 10:27 result.tar.gz
[2025-12-17 10:27:59] -rw------- 1 boinc boinc       659 Dec 17 10:27 xmWLDmeOdp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwcZKDmDrKgCn.diag
[2025-12-17 10:27:59] -rw-r--r-- 1 boinc boinc      8897 Dec 17 10:27 runtime_log.err
[2025-12-17 10:27:59] -rw-r--r-- 1 boinc boinc     11283 Dec 17 10:27 stderr.txt
[2025-12-17 10:27:59] HITS file was successfully produced:
[2025-12-17 10:27:59] -rw------- 1 boinc boinc 194017236 Dec 17 10:26 shared/HITS.pool.root.1
[2025-12-17 10:27:59]  *** Contents of shared directory: ***
[2025-12-17 10:27:59] total 400740
[2025-12-17 10:27:59] -rw-r--r-- 2 boinc boinc 214489431 Dec 17 08:40 ATLAS.root_0
[2025-12-17 10:27:59] -rw-r--r-- 2 boinc boinc    592394 Dec 17 08:40 input.tar.gz
[2025-12-17 10:27:59] -rw-r--r-- 2 boinc boinc     15847 Dec 17 08:40 start_atlas.sh
[2025-12-17 10:27:59] -rw------- 1 boinc boinc 194017236 Dec 17 10:26 HITS.pool.root.1
[2025-12-17 10:27:59] -rw------- 1 boinc boinc   1228800 Dec 17 10:27 result.tar.gz
10:28:00 (785279): run_atlas exited; CPU time 18531.543646
10:28:00 (785279): called boinc_finish(0)

</stderr_txt>
]]>

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