Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:04:27 (665211): wrapper (7.7.26015): starting
16:04:27 (665211): wrapper: running run_atlas (--nthreads 3)
[2025-12-16 16:04:27] Arguments: --nthreads 3
[2025-12-16 16:04:27] Threads: 3
[2025-12-16 16:04:27] Checking for CVMFS
[2025-12-16 16:04:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 16:04:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 16:04:27] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 16:04:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 16:04:28] 2.9.2.0 3658277 4721 81896 154073 0 57 19709021 36864001 0 130560 0 3141969 99.990 165927 15675 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-16 16:04:28] CVMFS is ok
[2025-12-16 16:04:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 16:04:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 16:04:28] Further information can be found at the LHC@home message board.
[2025-12-16 16:04:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 16:04:28] Checking for apptainer binary...
[2025-12-16 16:04:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 16:04:28] Running /usr/bin/apptainer --version
[2025-12-16 16:04:28] apptainer version 1.4.1-1.1
[2025-12-16 16:04:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 16:04:28] thA305b
[2025-12-16 16:04:28] apptainer works
[2025-12-16 16:04:28] Set ATHENA_PROC_NUMBER=3
[2025-12-16 16:04:28] Set ATHENA_CORE_NUMBER=3
[2025-12-16 16:04:28] Starting ATLAS job with PandaID=6930227849
[2025-12-16 16:04:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 18:00:47]  *** The last 200 lines of the pilot log: ***
[2025-12-16 18:00:47] 2025-12-16 17:00:11,687 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 18:00:47] 2025-12-16 17:00:11,687 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 18:00:47] 2025-12-16 17:00:11,687 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 18:00:47] 2025-12-16 17:00:11,687 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 18:00:47] 2025-12-16 17:00:11,687 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 18:00:47] 2025-12-16 17:00:11,687 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 18:00:47] 2025-12-16 17:00:11,687 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 18:00:47] 2025-12-16 17:00:11,687 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 18:00:47] 2025-12-16 17:00:11,687 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 18:00:47] 2025-12-16 17:00:11,687 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 18:00:47] 2025-12-16 17:00:11,687 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 18:00:47] 2025-12-16 17:00:11,687 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 18:00:47] 2025-12-16 17:00:11,687 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 18:00:47] 2025-12-16 17:00:11,687 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 18:00:47] 2025-12-16 17:00:11,687 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 18:00:47] 2025-12-16 17:00:11,687 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 18:00:47] 2025-12-16 17:00:11,687 | INFO     | job 6930227849 has completed (purged errors)
[2025-12-16 18:00:47] 2025-12-16 17:00:11,688 | INFO     | overall cleanup function is called
[2025-12-16 18:00:47] 2025-12-16 17:00:12,694 | INFO     | --- collectZombieJob: --- 10, [675394]
[2025-12-16 18:00:47] 2025-12-16 17:00:12,694 | INFO     | zombie collector waiting for pid 675394
[2025-12-16 18:00:47] 2025-12-16 17:00:12,695 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 18:00:47] 2025-12-16 17:00:12,695 | INFO     | collected zombie processes
[2025-12-16 18:00:47] 2025-12-16 17:00:12,695 | INFO     | will attempt to kill all subprocesses of pid=675394
[2025-12-16 18:00:47] 2025-12-16 17:00:12,738 | INFO     | process IDs to be killed: [675394] (in reverse order)
[2025-12-16 18:00:47] 2025-12-16 17:00:12,764 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 18:00:47] 2025-12-16 17:00:12,764 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 18:00:47] 2025-12-16 17:00:12,766 | INFO     | did not find any defunct processes belonging to 675394
[2025-12-16 18:00:47] 2025-12-16 17:00:12,767 | INFO     | did not find any defunct processes belonging to 675394
[2025-12-16 18:00:47] 2025-12-16 17:00:12,767 | INFO     | ready for new job
[2025-12-16 18:00:47] 2025-12-16 17:00:12,767 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 18:00:47] 2025-12-16 17:00:12,767 | INFO     | ***************************************
[2025-12-16 18:00:47] 2025-12-16 17:00:12,768 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 18:00:47] 2025-12-16 17:00:12,768 | INFO     | ***************************************
[2025-12-16 18:00:47] 2025-12-16 17:00:12,768 | INFO     | 
[2025-12-16 18:00:47] 2025-12-16 17:00:12,768 | INFO     | architecture information:
[2025-12-16 18:00:47] 2025-12-16 17:00:12,768 | INFO     | executing command: cat /etc/os-release
[2025-12-16 18:00:47] 2025-12-16 17:00:12,777 | INFO     | cat /etc/os-release:
[2025-12-16 18:00:47] NAME="CentOS Linux"
[2025-12-16 18:00:47] VERSION="7 (Core)"
[2025-12-16 18:00:47] ID="centos"
[2025-12-16 18:00:47] ID_LIKE="rhel fedora"
[2025-12-16 18:00:47] VERSION_ID="7"
[2025-12-16 18:00:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 18:00:47] ANSI_COLOR="0;31"
[2025-12-16 18:00:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 18:00:47] HOME_URL="https://www.centos.org/"
[2025-12-16 18:00:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 18:00:47] 
[2025-12-16 18:00:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 18:00:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 18:00:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 18:00:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 18:00:47] 
[2025-12-16 18:00:47] 2025-12-16 17:00:12,777 | INFO     | ***************************************
[2025-12-16 18:00:47] 2025-12-16 17:00:13,281 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-16 18:00:47] 2025-12-16 17:00:13,293 | INFO     | sufficient remaining disk space (185260310528 B)
[2025-12-16 18:00:47] 2025-12-16 17:00:13,293 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 18:00:47] 2025-12-16 17:00:13,293 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 18:00:47] 2025-12-16 17:00:13,293 | INFO     | update_server=False
[2025-12-16 18:00:47] 2025-12-16 17:00:13,293 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 18:00:47] 2025-12-16 17:00:13,350 | INFO     | all payload control threads have been joined
[2025-12-16 18:00:47] 2025-12-16 17:00:13,390 | INFO     | all job control threads have been joined
[2025-12-16 18:00:47] 2025-12-16 17:00:13,594 | INFO     | all data control threads have been joined
[2025-12-16 18:00:47] 2025-12-16 17:00:13,629 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 18:00:47] 2025-12-16 17:00:14,184 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 18:00:47] 2025-12-16 17:00:14,184 | INFO     | aborting loop
[2025-12-16 18:00:47] 2025-12-16 17:00:14,299 | INFO     | [job] retrieve thread has finished
[2025-12-16 18:00:47] 2025-12-16 17:00:14,347 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 18:00:47] 2025-12-16 17:00:14,355 | INFO     | [payload] control thread has finished
[2025-12-16 18:00:47] 2025-12-16 17:00:14,391 | INFO     | [job] control thread has finished
[2025-12-16 18:00:47] 2025-12-16 17:00:14,511 | INFO     | [payload] failed_post thread has finished
[2025-12-16 18:00:47] 2025-12-16 17:00:14,600 | INFO     | [data] control thread has finished
[2025-12-16 18:00:47] 2025-12-16 17:00:15,027 | INFO     | [payload] validate_post thread has finished
[2025-12-16 18:00:47] 2025-12-16 17:00:15,190 | INFO     | [job] job monitor thread has finished
[2025-12-16 18:00:47] 2025-12-16 17:00:15,404 | INFO     | [data] copytool_in thread has finished
[2025-12-16 18:00:47] 2025-12-16 17:00:15,525 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 18:00:47] 2025-12-16 17:00:15,635 | INFO     | [data] copytool_out thread has finished
[2025-12-16 18:00:47] 2025-12-16 17:00:15,708 | INFO     | [job] validate thread has finished
[2025-12-16 18:00:47] 2025-12-16 17:00:15,782 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 18:00:47] 2025-12-16 17:00:16,241 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 18:00:47] 2025-12-16 17:00:16,702 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 18:00:47] 2025-12-16 17:00:17,247 | INFO     | [job] queue monitor thread has finished
[2025-12-16 18:00:47] 2025-12-16 17:00:20,709 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 18:00:47] 2025-12-16 17:00:24,340 | INFO     | job.realtimelogging is not enabled
[2025-12-16 18:00:47] 2025-12-16 17:00:25,345 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 18:00:47] 2025-12-16 17:00:42,327 | INFO     | [monitor] cgroup control has ended
[2025-12-16 18:00:47] 2025-12-16 17:00:42,347 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139954025637696)>', '<ExcThread(monitor, started 139953296099072)>']
[2025-12-16 18:00:47] 2025-12-16 17:00:43,088 | INFO     | PID=668943 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 18:00:47] 2025-12-16 17:00:43,088 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 18:00:47] 2025-12-16 17:00:43,089 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 18:00:47] 2025-12-16 17:00:43,089 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 18:00:47] 2025-12-16 17:00:43,089 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 18:00:47] 2025-12-16 17:00:43,089 | INFO     | [monitor] control thread has ended
[2025-12-16 18:00:47] 2025-12-16 17:00:47,367 | INFO     | all workflow threads have been joined
[2025-12-16 18:00:47] 2025-12-16 17:00:47,367 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 18:00:47] 2025-12-16 17:00:47,367 | INFO     | traces error code: 0
[2025-12-16 18:00:47] 2025-12-16 17:00:47,368 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 18:00:47] 2025-12-16 17:00:47,418 [wrapper] ==== pilot stdout END ====
[2025-12-16 18:00:47] 2025-12-16 17:00:47,421 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 18:00:47] 2025-12-16 17:00:47,423 [wrapper] pilotpid: 668943
[2025-12-16 18:00:47] 2025-12-16 17:00:47,426 [wrapper] Pilot exit status: 0
[2025-12-16 18:00:47] 2025-12-16 17:00:47,434 [wrapper] pandaids: 6930227849
[2025-12-16 18:00:47] 2025-12-16 17:00:47,451 [wrapper] cleanup supervisor_pilot  689811 668944
[2025-12-16 18:00:47] 2025-12-16 17:00:47,453 [wrapper] Test setup, not cleaning
[2025-12-16 18:00:47] 2025-12-16 17:00:47,456 [wrapper] apfmon messages muted
[2025-12-16 18:00:47] 2025-12-16 17:00:47,458 [wrapper] ==== wrapper stdout END ====
[2025-12-16 18:00:47] 2025-12-16 17:00:47,461 [wrapper] ==== wrapper stderr END ====
[2025-12-16 18:00:47]  *** Error codes and diagnostics ***
[2025-12-16 18:00:47]     "exeErrorCode": 0,
[2025-12-16 18:00:47]     "exeErrorDiag": "",
[2025-12-16 18:00:47]     "pilotErrorCode": 0,
[2025-12-16 18:00:47]     "pilotErrorDiag": "",
[2025-12-16 18:00:47]  *** Listing of results directory ***
[2025-12-16 18:00:47] total 444648
[2025-12-16 18:00:47] -rw-r--r-- 1 boinc boinc      5112 Dec 16 03:06 queuedata.json
[2025-12-16 18:00:47] -rw-r--r-- 1 boinc boinc    579449 Dec 16 03:06 pilot3.tar.gz
[2025-12-16 18:00:47] -rwx------ 1 boinc boinc     36322 Dec 16 03:06 runpilot2-wrapper.sh
[2025-12-16 18:00:47] -rw-r--r-- 1 boinc boinc       100 Dec 16 16:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 18:00:47] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 16:04 run_atlas
[2025-12-16 18:00:47] -rw-r--r-- 1 boinc boinc       105 Dec 16 16:04 job.xml
[2025-12-16 18:00:47] -rw-r--r-- 2 boinc boinc 222542998 Dec 16 16:04 EVNT.47898761._000720.pool.root.1
[2025-12-16 18:00:47] -rw-r--r-- 2 boinc boinc    592399 Dec 16 16:04 input.tar.gz
[2025-12-16 18:00:47] -rw-r--r-- 2 boinc boinc     15847 Dec 16 16:04 start_atlas.sh
[2025-12-16 18:00:47] drwxrwx--x 2 boinc boinc      4096 Dec 16 16:04 shared
[2025-12-16 18:00:47] -rw-r--r-- 1 boinc boinc         0 Dec 16 16:04 boinc_setup_complete
[2025-12-16 18:00:47] -rw-r--r-- 1 boinc boinc      6447 Dec 16 16:04 init_data.xml
[2025-12-16 18:00:47] -rw-r--r-- 1 boinc boinc         0 Dec 16 16:04 boinc_lockfile
[2025-12-16 18:00:47] -rw-r--r-- 1 boinc boinc      2508 Dec 16 16:04 pandaJob.out
[2025-12-16 18:00:47] -rw------- 1 boinc boinc    987355 Dec 16 16:04 agis_schedconf.cvmfs.json
[2025-12-16 18:00:47] -rw------- 1 boinc boinc   1516240 Dec 16 16:04 agis_ddmendpoints.agis.ALL.json
[2025-12-16 18:00:47] drwx------ 5 boinc boinc      4096 Dec 16 16:04 pilot3
[2025-12-16 18:00:47] -rw------- 1 boinc boinc 226303926 Dec 16 17:59 HITS.47898763._018122.pool.root.1
[2025-12-16 18:00:47] -rw-r--r-- 1 boinc boinc       530 Dec 16 17:59 boinc_task_state.xml
[2025-12-16 18:00:47] -rw------- 1 boinc boinc      1016 Dec 16 17:59 memory_monitor_summary.json
[2025-12-16 18:00:47] -rw------- 1 boinc boinc    287898 Dec 16 18:00 log.47898763._018122.job.log.tgz.1
[2025-12-16 18:00:47] -rw------- 1 boinc boinc        95 Dec 16 18:00 pilot_heartbeat.json
[2025-12-16 18:00:47] -rw------- 1 boinc boinc      7745 Dec 16 18:00 heartbeat.json
[2025-12-16 18:00:47] -rw-r--r-- 1 boinc boinc      8192 Dec 16 18:00 boinc_mmap_file
[2025-12-16 18:00:47] -rw-r--r-- 1 boinc boinc        27 Dec 16 18:00 wrapper_checkpoint.txt
[2025-12-16 18:00:47] -rw------- 1 boinc boinc      4823 Dec 16 18:00 pilotlog.txt
[2025-12-16 18:00:47] -rw------- 1 boinc boinc    997960 Dec 16 18:00 log.47898763._018122.job.log.1
[2025-12-16 18:00:47] -rw------- 1 boinc boinc       357 Dec 16 18:00 output.list
[2025-12-16 18:00:47] -rw-r--r-- 1 boinc boinc       620 Dec 16 18:00 runtime_log
[2025-12-16 18:00:47] -rw------- 1 boinc boinc   1300480 Dec 16 18:00 result.tar.gz
[2025-12-16 18:00:47] -rw-r--r-- 1 boinc boinc      8902 Dec 16 18:00 runtime_log.err
[2025-12-16 18:00:47] -rw------- 1 boinc boinc       660 Dec 16 18:00 HZ4MDmZdZp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmR3YKDmrRVPYm.diag
[2025-12-16 18:00:47] -rw-r--r-- 1 boinc boinc     12538 Dec 16 18:00 stderr.txt
[2025-12-16 18:00:47] HITS file was successfully produced:
[2025-12-16 18:00:47] -rw------- 1 boinc boinc 226303926 Dec 16 17:59 shared/HITS.pool.root.1
[2025-12-16 18:00:47]  *** Contents of shared directory: ***
[2025-12-16 18:00:47] total 440204
[2025-12-16 18:00:47] -rw-r--r-- 2 boinc boinc 222542998 Dec 16 16:04 ATLAS.root_0
[2025-12-16 18:00:47] -rw-r--r-- 2 boinc boinc    592399 Dec 16 16:04 input.tar.gz
[2025-12-16 18:00:47] -rw-r--r-- 2 boinc boinc     15847 Dec 16 16:04 start_atlas.sh
[2025-12-16 18:00:47] -rw------- 1 boinc boinc 226303926 Dec 16 17:59 HITS.pool.root.1
[2025-12-16 18:00:47] -rw------- 1 boinc boinc   1300480 Dec 16 18:00 result.tar.gz
18:00:48 (665211): run_atlas exited; CPU time 20158.979508
18:00:48 (665211): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN