Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
11:26:35 (2935921): wrapper (7.7.26015): starting
11:26:35 (2935921): wrapper: running run_atlas (--nthreads 12)
[2025-12-16 11:26:35] Arguments: --nthreads 12
[2025-12-16 11:26:35] Threads: 12
[2025-12-16 11:26:35] Checking for CVMFS
[2025-12-16 11:26:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 11:26:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 11:26:35] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 11:26:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 11:26:35] 2.11.0.0 1971323 1874 95220 154069 1 188 3342307 6144001 11836 130560 0 22083114 99.999 72084 192 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-12-16 11:26:35] CVMFS is ok
[2025-12-16 11:26:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 11:26:35] Checking for apptainer binary...
[2025-12-16 11:26:35] apptainer is not installed, using version from CVMFS
[2025-12-16 11:26:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 11:26:36] radiat0r
[2025-12-16 11:26:36] apptainer works
[2025-12-16 11:26:36] Set ATHENA_PROC_NUMBER=12
[2025-12-16 11:26:36] Set ATHENA_CORE_NUMBER=12
[2025-12-16 11:26:36] Starting ATLAS job with PandaID=6929808563
[2025-12-16 11:26:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 12:38:02]  *** The last 200 lines of the pilot log: ***
[2025-12-16 12:38:02] 2025-12-16 12:37:25,132 | INFO     | adding to output.list: log.47898826._002445.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ca/ae/log.47898826._002445.job.log.tg
[2025-12-16 12:38:02] 2025-12-16 12:37:25,133 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-16 12:38:02] 2025-12-16 12:37:25,133 | INFO     | summary of transferred files:
[2025-12-16 12:38:02] 2025-12-16 12:37:25,133 | INFO     |  -- lfn=log.47898826._002445.job.log.tgz.1, status_code=0, status=transferred
[2025-12-16 12:38:02] 2025-12-16 12:37:25,134 | INFO     | stage-out finished correctly
[2025-12-16 12:38:02] 2025-12-16 12:37:27,003 | INFO     | time since job start (4239s) is within the limit (174528.0s)
[2025-12-16 12:38:02] 2025-12-16 12:37:28,083 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-16 12:38:02] 2025-12-16 12:37:28,647 | INFO     | job 6929808563 has state=finished
[2025-12-16 12:38:02] 2025-12-16 12:37:28,651 | INFO     | preparing for final server update for job 6929808563 in state='finished'
[2025-12-16 12:38:02] 2025-12-16 12:37:28,653 | INFO     | this job has now completed (state=finished)
[2025-12-16 12:38:02] 2025-12-16 12:37:28,655 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-16 12:38:02] 2025-12-16 12:37:28,655 | INFO     | log transfer has been attempted: DONE
[2025-12-16 12:38:02] 2025-12-16 12:37:28,655 | INFO     | job 6929808563 has finished - writing final server update
[2025-12-16 12:38:02] 2025-12-16 12:37:28,656 | INFO     | total number of processed events: 400 (read)
[2025-12-16 12:38:02] 2025-12-16 12:37:28,657 | INFO     | executing command: lscpu
[2025-12-16 12:38:02] 2025-12-16 12:37:28,849 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 12:38:02] 2025-12-16 12:37:29,008 | INFO     | time since job start (4241s) is within the limit (174528.0s)
[2025-12-16 12:38:02] 2025-12-16 12:37:29,449 | WARNING  | process 2948786 can no longer be monitored (due to stat problems) - aborting
[2025-12-16 12:38:02] 2025-12-16 12:37:29,449 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6929808563/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 12:38:02] 2025-12-16 12:37:29,451 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6929808563/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 12:38:02] 2025-12-16 12:37:29,451 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-12-16 12:38:02] 2025-12-16 12:37:29,451 | WARNING  | maxPSS not found in memory monitor output
[2025-12-16 12:38:02] 2025-12-16 12:37:29,452 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4483113 B
[2025-12-16 12:38:02] 2025-12-16 12:37:29,452 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16797 B
[2025-12-16 12:38:02] 2025-12-16 12:37:29,452 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-12-16 12:38:02] 2025-12-16 12:37:31,014 | INFO     | time since job start (4243s) is within the limit (174528.0s)
[2025-12-16 12:38:02] 2025-12-16 12:37:33,020 | INFO     | time since job start (4245s) is within the limit (174528.0s)
[2025-12-16 12:38:02] 2025-12-16 12:37:34,769 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 12:38:02] 2025-12-16 12:37:34,797 | INFO     | sufficient remaining disk space (1704222261248 B)
[2025-12-16 12:38:02] 2025-12-16 12:37:34,798 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2025-12-16 12:38:02] 2025-12-16 12:37:34,799 | INFO     | size of work directory /var/lib/boinc/slots/19/PanDA_Pilot-6929808563: 4778927 B (within 2768240640 B limit)
[2025-12-16 12:38:02] 2025-12-16 12:37:34,799 | INFO     | pfn file=/var/lib/boinc/slots/19/PanDA_Pilot-6929808563/HITS.47898826._002445.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-16 12:38:02] 2025-12-16 12:37:34,799 | INFO     | total size of present files: 0 B (workdir size: 4778927 B)
[2025-12-16 12:38:02] 2025-12-16 12:37:34,799 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/19/PanDA_Pilot-6929808563/HITS.47898826._002445.pool.root.1 since it does not exist
[2025-12-16 12:38:02] 2025-12-16 12:37:34,901 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2428.736632812501
[2025-12-16 12:38:02] 2025-12-16 12:37:35,005 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6929808563/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 12:38:02] 2025-12-16 12:37:35,006 | INFO     | extracted standard info from prmon json
[2025-12-16 12:38:02] 2025-12-16 12:37:35,007 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 12:38:02] 2025-12-16 12:37:35,007 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 12:38:02] 2025-12-16 12:37:35,007 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 12:38:02] 2025-12-16 12:37:35,007 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 12:38:02] 2025-12-16 12:37:35,009 | INFO     | fitting pss+swap vs Time
[2025-12-16 12:38:02] 2025-12-16 12:37:35,010 | INFO     | sum of square deviations: 73882315.5
[2025-12-16 12:38:02] 2025-12-16 12:37:35,010 | INFO     | sum of deviations: -158210088.00000006
[2025-12-16 12:38:02] 2025-12-16 12:37:35,010 | INFO     | mean x: 1765886605.5
[2025-12-16 12:38:02] 2025-12-16 12:37:35,010 | INFO     | mean y: 2681926.4838709678
[2025-12-16 12:38:02] 2025-12-16 12:37:35,011 | INFO     | intersect: 3784115593.8433676
[2025-12-16 12:38:02] 2025-12-16 12:37:35,011 | INFO     | chi2: 0.003400474475141413
[2025-12-16 12:38:02] 2025-12-16 12:37:35,011 | INFO     | current memory leak: -2.14 B/s (using 62 data points, chi2=0.00)
[2025-12-16 12:38:02] 2025-12-16 12:37:35,012 | INFO     | could have reported an average CPU frequency of 2389 MHz (6 samples)
[2025-12-16 12:38:02] 2025-12-16 12:37:35,012 | INFO     | ..............................
[2025-12-16 12:38:02] 2025-12-16 12:37:35,012 | INFO     | . Timing measurements:
[2025-12-16 12:38:02] 2025-12-16 12:37:35,012 | INFO     | . get job = 0 s
[2025-12-16 12:38:02] 2025-12-16 12:37:35,012 | INFO     | . initial setup = 1 s
[2025-12-16 12:38:02] 2025-12-16 12:37:35,012 | INFO     | . payload setup = 7 s
[2025-12-16 12:38:02] 2025-12-16 12:37:35,012 | INFO     | . stage-in = 0 s
[2025-12-16 12:38:02] 2025-12-16 12:37:35,013 | INFO     | . payload execution = 4205 s
[2025-12-16 12:38:02] 2025-12-16 12:37:35,013 | INFO     | . stage-out = 0 s
[2025-12-16 12:38:02] 2025-12-16 12:37:35,013 | INFO     | . log creation = 0 s
[2025-12-16 12:38:02] 2025-12-16 12:37:35,013 | INFO     | ..............................
[2025-12-16 12:38:02] 2025-12-16 12:37:35,029 | INFO     | time since job start (4247s) is within the limit (174528.0s)
[2025-12-16 12:38:02] 2025-12-16 12:37:35,113 | INFO     | 
[2025-12-16 12:38:02] 2025-12-16 12:37:35,113 | INFO     | job summary report
[2025-12-16 12:38:02] 2025-12-16 12:37:35,114 | INFO     | --------------------------------------------------
[2025-12-16 12:38:02] 2025-12-16 12:37:35,114 | INFO     | PanDA job id: 6929808563
[2025-12-16 12:38:02] 2025-12-16 12:37:35,114 | INFO     | task id: 47898826
[2025-12-16 12:38:02] 2025-12-16 12:37:35,114 | INFO     | errors: (none)
[2025-12-16 12:38:02] 2025-12-16 12:37:35,114 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 12:38:02] 2025-12-16 12:37:35,114 | INFO     | pilot state: finished 
[2025-12-16 12:38:02] 2025-12-16 12:37:35,114 | INFO     | transexitcode: 0
[2025-12-16 12:38:02] 2025-12-16 12:37:35,114 | INFO     | exeerrorcode: 0
[2025-12-16 12:38:02] 2025-12-16 12:37:35,115 | INFO     | exeerrordiag: 
[2025-12-16 12:38:02] 2025-12-16 12:37:35,115 | INFO     | exitcode: 0
[2025-12-16 12:38:02] 2025-12-16 12:37:35,115 | INFO     | exitmsg: OK
[2025-12-16 12:38:02] 2025-12-16 12:37:35,115 | INFO     | cpuconsumptiontime: 46000 s
[2025-12-16 12:38:02] 2025-12-16 12:37:35,115 | INFO     | nevents: 400
[2025-12-16 12:38:02] 2025-12-16 12:37:35,115 | INFO     | neventsw: 0
[2025-12-16 12:38:02] 2025-12-16 12:37:35,115 | INFO     | pid: 2948786
[2025-12-16 12:38:02] 2025-12-16 12:37:35,115 | INFO     | pgrp: 2948786
[2025-12-16 12:38:02] 2025-12-16 12:37:35,116 | INFO     | corecount: 12
[2025-12-16 12:38:02] 2025-12-16 12:37:35,116 | INFO     | event service: False
[2025-12-16 12:38:02] 2025-12-16 12:37:35,116 | INFO     | sizes: {0: 2283790, 1: 2283989, 7: 2284251, 11: 2284279, 4216: 2310385, 4219: 2319385, 4222: 2319569, 4228: 2319791}
[2025-12-16 12:38:02] 2025-12-16 12:37:35,116 | INFO     | --------------------------------------------------
[2025-12-16 12:38:02] 2025-12-16 12:37:35,116 | INFO     | 
[2025-12-16 12:38:02] 2025-12-16 12:37:35,116 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-12-16 12:38:02] 2025-12-16 12:37:35,149 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 12:38:02] 2025-12-16 12:37:35,149 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 12:38:02] 2025-12-16 12:37:35,149 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 12:38:02] 2025-12-16 12:37:35,149 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 12:38:02] 2025-12-16 12:37:35,150 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 12:38:02] 2025-12-16 12:37:35,150 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 12:38:02] 2025-12-16 12:37:35,150 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 12:38:02] 2025-12-16 12:37:35,150 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 12:38:02] 2025-12-16 12:37:35,150 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 12:38:02] 2025-12-16 12:37:35,150 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 12:38:02] 2025-12-16 12:37:35,150 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 12:38:02] 2025-12-16 12:37:35,150 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 12:38:02] 2025-12-16 12:37:35,151 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 12:38:02] 2025-12-16 12:37:35,151 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 12:38:02] 2025-12-16 12:37:35,151 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 12:38:02] 2025-12-16 12:37:35,151 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 12:38:02] 2025-12-16 12:37:35,151 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 12:38:02] 2025-12-16 12:37:35,151 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 12:38:02] 2025-12-16 12:37:35,151 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 12:38:02] 2025-12-16 12:37:35,152 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 12:38:02] 2025-12-16 12:37:35,152 | INFO     | job 6929808563 has completed (purged errors)
[2025-12-16 12:38:02] 2025-12-16 12:37:35,152 | INFO     | overall cleanup function is called
[2025-12-16 12:38:02] 2025-12-16 12:37:35,827 | INFO     | number of running child processes to parent process 2948786: 1
[2025-12-16 12:38:02] 2025-12-16 12:37:35,827 | INFO     | maximum number of monitored processes: 6
[2025-12-16 12:38:02] 2025-12-16 12:37:35,827 | INFO     | aborting job monitoring since job object (job id=6929808563) has expired
[2025-12-16 12:38:02] 2025-12-16 12:37:36,164 | INFO     | --- collectZombieJob: --- 10, [2948786]
[2025-12-16 12:38:02] 2025-12-16 12:37:36,165 | INFO     | zombie collector waiting for pid 2948786
[2025-12-16 12:38:02] 2025-12-16 12:37:36,165 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 12:38:02] 2025-12-16 12:37:36,165 | INFO     | collected zombie processes
[2025-12-16 12:38:02] 2025-12-16 12:37:36,165 | INFO     | will attempt to kill all subprocesses of pid=2948786
[2025-12-16 12:38:02] 2025-12-16 12:37:37,814 | INFO     | PID=2940615 has CPU usage=29.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-16 12:38:02] 2025-12-16 12:37:37,814 | INFO     | .. there are 14 such processes running
[2025-12-16 12:38:02] 2025-12-16 12:37:37,881 | INFO     | process IDs to be killed: [2948786] (in reverse order)
[2025-12-16 12:38:02] 2025-12-16 12:37:38,147 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 12:38:02] 2025-12-16 12:37:38,148 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 12:38:02] 2025-12-16 12:37:38,174 | INFO     | did not find any defunct processes belonging to 2948786
[2025-12-16 12:38:02] 2025-12-16 12:37:38,200 | INFO     | did not find any defunct processes belonging to 2948786
[2025-12-16 12:38:02] 2025-12-16 12:37:38,201 | INFO     | ready for new job
[2025-12-16 12:38:02] 2025-12-16 12:37:38,201 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 12:38:02] 2025-12-16 12:37:38,204 | INFO     | ***************************************
[2025-12-16 12:38:02] 2025-12-16 12:37:38,204 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 12:38:02] 2025-12-16 12:37:38,204 | INFO     | ***************************************
[2025-12-16 12:38:02] 2025-12-16 12:37:38,204 | INFO     | 
[2025-12-16 12:38:02] 2025-12-16 12:37:38,241 | INFO     | architecture information:
[2025-12-16 12:38:02] 2025-12-16 12:37:38,242 | INFO     | executing command: cat /etc/os-release
[2025-12-16 12:38:02] 2025-12-16 12:37:38,262 | INFO     | cat /etc/os-release:
[2025-12-16 12:38:02] NAME="CentOS Linux"
[2025-12-16 12:38:02] VERSION="7 (Core)"
[2025-12-16 12:38:02] ID="centos"
[2025-12-16 12:38:02] ID_LIKE="rhel fedora"
[2025-12-16 12:38:02] VERSION_ID="7"
[2025-12-16 12:38:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 12:38:02] ANSI_COLOR="0;31"
[2025-12-16 12:38:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 12:38:02] HOME_URL="https://www.centos.org/"
[2025-12-16 12:38:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 12:38:02] 
[2025-12-16 12:38:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 12:38:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 12:38:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 12:38:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 12:38:02] 
[2025-12-16 12:38:02] 2025-12-16 12:37:38,262 | INFO     | ***************************************
[2025-12-16 12:38:02] 2025-12-16 12:37:38,765 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-12-16 12:38:02] 2025-12-16 12:37:38,791 | INFO     | sufficient remaining disk space (1704226455552 B)
[2025-12-16 12:38:02] 2025-12-16 12:37:38,791 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 12:38:02] 2025-12-16 12:37:38,791 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 12:38:02] 2025-12-16 12:37:38,791 | INFO     | update_server=False
[2025-12-16 12:38:02] 2025-12-16 12:37:38,792 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 12:38:02] 2025-12-16 12:37:38,792 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 12:38:02] 2025-12-16 12:37:38,793 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 12:38:02] 2025-12-16 12:37:38,793 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-16 12:38:02] 2025-12-16 12:37:38,794 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 12:38:02] 2025-12-16 12:37:38,794 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 12:38:02] 2025-12-16 12:37:38,794 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 12:38:02] 2025-12-16 12:37:39,275 | INFO     | all data control threads have been joined
[2025-12-16 12:38:02] 2025-12-16 12:37:39,282 | INFO     | all payload control threads have been joined
[2025-12-16 12:38:02] 2025-12-16 12:37:39,295 | INFO     | all job control threads have been joined
[2025-12-16 12:38:02] 2025-12-16 12:37:39,339 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 12:38:02] 2025-12-16 12:37:39,339 | INFO     | aborting loop
[2025-12-16 12:38:02] 2025-12-16 12:37:39,795 | INFO     | [job] retrieve thread has finished
[2025-12-16 12:38:02] 2025-12-16 12:37:39,919 | INFO     | [payload] validate_post thread has finished
[2025-12-16 12:38:02] 2025-12-16 12:37:39,989 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 12:38:02] 2025-12-16 12:37:40,124 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 12:38:02] 2025-12-16 12:37:40,279 | INFO     | [data] control thread has finished
[2025-12-16 12:38:02] 2025-12-16 12:37:40,287 | INFO     | [payload] control thread has finished
[2025-12-16 12:38:02] 2025-12-16 12:37:40,289 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 12:38:02] 2025-12-16 12:37:40,301 | INFO     | [job] control thread has finished
[2025-12-16 12:38:02] 2025-12-16 12:37:40,346 | INFO     | [job] job monitor thread has finished
[2025-12-16 12:38:02] 2025-12-16 12:37:40,480 | INFO     | [payload] failed_post thread has finished
[2025-12-16 12:38:02] 2025-12-16 12:37:40,646 | INFO     | [job] validate thread has finished
[2025-12-16 12:38:02] 2025-12-16 12:37:40,799 | INFO     | [data] copytool_out thread has finished
[2025-12-16 12:38:02] 2025-12-16 12:37:40,958 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 12:38:02] 2025-12-16 12:37:41,018 | INFO     | [data] copytool_in thread has finished
[2025-12-16 12:38:02] 2025-12-16 12:37:41,077 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 12:38:02] 2025-12-16 12:37:41,130 | INFO     | [job] queue monitor thread has finished
[2025-12-16 12:38:02] 2025-12-16 12:37:42,800 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 12:38:02] 2025-12-16 12:37:54,675 | INFO     | [monitor] cgroup control has ended
[2025-12-16 12:38:02] 2025-12-16 12:37:56,643 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140499004188480)>', '<ExcThread(monitor, started 140498429794048)>']
[2025-12-16 12:38:02] 2025-12-16 12:37:56,880 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 12:38:02] 2025-12-16 12:37:56,880 | INFO     | [monitor] control thread has ended
[2025-12-16 12:38:02] 2025-12-16 12:38:01,667 | INFO     | all workflow threads have been joined
[2025-12-16 12:38:02] 2025-12-16 12:38:01,667 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 12:38:02] 2025-12-16 12:38:01,668 | INFO     | traces error code: 0
[2025-12-16 12:38:02] 2025-12-16 12:38:01,668 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 12:38:02] 2025-12-16 12:38:01,831 [wrapper] ==== pilot stdout END ====
[2025-12-16 12:38:02] 2025-12-16 12:38:01,833 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 12:38:02] 2025-12-16 12:38:01,835 [wrapper] pilotpid: 2940615
[2025-12-16 12:38:02] 2025-12-16 12:38:01,839 [wrapper] Pilot exit status: 0
[2025-12-16 12:38:02] 2025-12-16 12:38:01,850 [wrapper] pandaids: 6929808563
[2025-12-16 12:38:02] 2025-12-16 12:38:01,982 [wrapper] cleanup supervisor_pilot 3253542 2940616
[2025-12-16 12:38:02] 2025-12-16 12:38:01,984 [wrapper] Test setup, not cleaning
[2025-12-16 12:38:02] 2025-12-16 12:38:01,987 [wrapper] apfmon messages muted
[2025-12-16 12:38:02] 2025-12-16 12:38:01,990 [wrapper] ==== wrapper stdout END ====
[2025-12-16 12:38:02] 2025-12-16 12:38:01,992 [wrapper] ==== wrapper stderr END ====
[2025-12-16 12:38:02]  *** Error codes and diagnostics ***
[2025-12-16 12:38:02]     "exeErrorCode": 0,
[2025-12-16 12:38:02]     "exeErrorDiag": "",
[2025-12-16 12:38:02]     "pilotErrorCode": 0,
[2025-12-16 12:38:02]     "pilotErrorDiag": "",
[2025-12-16 12:38:02]  *** Listing of results directory ***
[2025-12-16 12:38:02] total 441688
[2025-12-16 12:38:02] -rwx------ 1 boinc boinc     36322 Dec 15 15:55 runpilot2-wrapper.sh
[2025-12-16 12:38:02] -rw-r--r-- 1 boinc boinc      5112 Dec 15 15:57 queuedata.json
[2025-12-16 12:38:02] -rw-r--r-- 1 boinc boinc    579449 Dec 15 15:57 pilot3.tar.gz
[2025-12-16 12:38:02] -rw-r--r-- 1 boinc boinc       100 Dec 16 11:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 12:38:02] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 11:26 run_atlas
[2025-12-16 12:38:02] -rw-r--r-- 1 boinc boinc       105 Dec 16 11:26 job.xml
[2025-12-16 12:38:02] -rw-r--r-- 2 boinc boinc     15847 Dec 16 11:26 start_atlas.sh
[2025-12-16 12:38:02] drwxrwx--x 2 boinc boinc      4096 Dec 16 11:26 shared
[2025-12-16 12:38:02] -rw-r--r-- 2 boinc boinc    592394 Dec 16 11:26 input.tar.gz
[2025-12-16 12:38:02] -rw-r--r-- 2 boinc boinc 225708090 Dec 16 11:26 EVNT.47898824._000096.pool.root.1
[2025-12-16 12:38:02] -rw-r--r-- 1 boinc boinc         0 Dec 16 11:26 boinc_setup_complete
[2025-12-16 12:38:02] -rw-r--r-- 1 boinc boinc      9416 Dec 16 11:26 init_data.xml
[2025-12-16 12:38:02] -rw-r--r-- 1 boinc boinc         0 Dec 16 11:26 boinc_lockfile
[2025-12-16 12:38:02] -rw-r--r-- 1 boinc boinc      2513 Dec 16 11:26 pandaJob.out
[2025-12-16 12:38:02] -rw------- 1 boinc boinc    991017 Dec 16 11:26 agis_schedconf.cvmfs.json
[2025-12-16 12:38:02] -rw------- 1 boinc boinc   1516240 Dec 16 11:26 agis_ddmendpoints.agis.ALL.json
[2025-12-16 12:38:02] drwx------ 5 boinc boinc      4096 Dec 16 11:26 pilot3
[2025-12-16 12:38:02] -rw------- 1 boinc boinc 220648107 Dec 16 12:36 HITS.47898826._002445.pool.root.1
[2025-12-16 12:38:02] -rw-r--r-- 1 boinc boinc       529 Dec 16 12:36 boinc_task_state.xml
[2025-12-16 12:38:02] -rw------- 1 boinc boinc        95 Dec 16 12:36 pilot_heartbeat.json
[2025-12-16 12:38:02] -rw------- 1 boinc boinc      1030 Dec 16 12:37 memory_monitor_summary.json
[2025-12-16 12:38:02] -rw------- 1 boinc boinc    391219 Dec 16 12:37 log.47898826._002445.job.log.tgz.1
[2025-12-16 12:38:02] -rw------- 1 boinc boinc      7739 Dec 16 12:37 heartbeat.json
[2025-12-16 12:38:02] -rw-r--r-- 1 boinc boinc      8192 Dec 16 12:37 boinc_mmap_file
[2025-12-16 12:38:02] -rw-r--r-- 1 boinc boinc        27 Dec 16 12:37 wrapper_checkpoint.txt
[2025-12-16 12:38:02] -rw------- 1 boinc boinc      4555 Dec 16 12:38 pilotlog.txt
[2025-12-16 12:38:02] -rw------- 1 boinc boinc    615662 Dec 16 12:38 log.47898826._002445.job.log.1
[2025-12-16 12:38:02] -rw------- 1 boinc boinc       357 Dec 16 12:38 output.list
[2025-12-16 12:38:02] -rw-r--r-- 1 boinc boinc       620 Dec 16 12:38 runtime_log
[2025-12-16 12:38:02] -rw------- 1 boinc boinc   1024000 Dec 16 12:38 result.tar.gz
[2025-12-16 12:38:02] -rw-r--r-- 1 boinc boinc      8788 Dec 16 12:38 runtime_log.err
[2025-12-16 12:38:02] -rw------- 1 boinc boinc       643 Dec 16 12:38 BAaMDmZ6Pp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhuTKDmxmyUwn.diag
[2025-12-16 12:38:02] -rw-r--r-- 1 boinc boinc     22363 Dec 16 12:38 stderr.txt
[2025-12-16 12:38:02] HITS file was successfully produced:
[2025-12-16 12:38:02] -rw------- 1 boinc boinc 220648107 Dec 16 12:36 shared/HITS.pool.root.1
[2025-12-16 12:38:02]  *** Contents of shared directory: ***
[2025-12-16 12:38:02] total 437504
[2025-12-16 12:38:02] -rw-r--r-- 2 boinc boinc     15847 Dec 16 11:26 start_atlas.sh
[2025-12-16 12:38:02] -rw-r--r-- 2 boinc boinc    592394 Dec 16 11:26 input.tar.gz
[2025-12-16 12:38:02] -rw-r--r-- 2 boinc boinc 225708090 Dec 16 11:26 ATLAS.root_0
[2025-12-16 12:38:02] -rw------- 1 boinc boinc 220648107 Dec 16 12:36 HITS.pool.root.1
[2025-12-16 12:38:02] -rw------- 1 boinc boinc   1024000 Dec 16 12:38 result.tar.gz
12:38:03 (2935921): run_atlas exited; CPU time 46259.912663
12:38:03 (2935921): called boinc_finish(0)

</stderr_txt>
]]>

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