Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:58:58 (8789): wrapper (7.7.26015): starting
14:58:58 (8789): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 14:58:58] Arguments: --nthreads 8
[2025-12-16 14:58:58] Threads: 8
[2025-12-16 14:58:58] Checking for CVMFS
[2025-12-16 14:58:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 14:58:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 14:58:59] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 14:59:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 14:59:01] 2.11.2.0 1190 291 66360 154072 2 60 21968043 25165824 4712 130560 0 479467 99.991 48467 3648 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-16 14:59:01] CVMFS is ok
[2025-12-16 14:59:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 14:59:01] Checking for apptainer binary...
[2025-12-16 14:59:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 14:59:01] Running /usr/bin/apptainer --version
[2025-12-16 14:59:01] apptainer version 1.3.2-1.el7
[2025-12-16 14:59:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 14:59:25] cg-vwn395.simple-grid.lan
[2025-12-16 14:59:25] apptainer works
[2025-12-16 14:59:25] Set ATHENA_PROC_NUMBER=8
[2025-12-16 14:59:25] Set ATHENA_CORE_NUMBER=8
[2025-12-16 14:59:25] Starting ATLAS job with PandaID=6930759033
[2025-12-16 14:59:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 19:37:17]  *** The last 200 lines of the pilot log: ***
[2025-12-16 19:37:17] 2025-12-16 18:36:26,809 | INFO     | time since job start (16426s) is within the limit (174528.0s)
[2025-12-16 19:37:17] 2025-12-16 18:36:27,463 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 19:37:17] 2025-12-16 18:36:27,464 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-16 19:37:17] 2025-12-16 18:36:27,466 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6930759033/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 19:37:17] 2025-12-16 18:36:27,466 | INFO     | extracted standard info from prmon json
[2025-12-16 19:37:17] 2025-12-16 18:36:27,466 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 19:37:17] 2025-12-16 18:36:27,466 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 19:37:17] 2025-12-16 18:36:27,467 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 19:37:17] 2025-12-16 18:36:27,467 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 19:37:17] 2025-12-16 18:36:27,472 | INFO     | fitting pss+swap vs Time
[2025-12-16 19:37:17] 2025-12-16 18:36:27,473 | INFO     | sum of square deviations: 5513070810.0
[2025-12-16 19:37:17] 2025-12-16 18:36:27,475 | INFO     | sum of deviations: 91376255521.99997
[2025-12-16 19:37:17] 2025-12-16 18:36:27,476 | INFO     | mean x: 1765902149.0
[2025-12-16 19:37:17] 2025-12-16 18:36:27,476 | INFO     | mean y: 2433126.574712644
[2025-12-16 19:37:17] 2025-12-16 18:36:27,476 | INFO     | intersect: -29266468281.545036
[2025-12-16 19:37:17] 2025-12-16 18:36:27,476 | INFO     | chi2: 5.634422990527682
[2025-12-16 19:37:17] 2025-12-16 18:36:27,477 | INFO     | sum of square deviations: 5202255680.0
[2025-12-16 19:37:17] 2025-12-16 18:36:27,479 | INFO     | sum of deviations: 106606599034.5
[2025-12-16 19:37:17] 2025-12-16 18:36:27,480 | INFO     | mean x: 1765901996.5
[2025-12-16 19:37:17] 2025-12-16 18:36:27,480 | INFO     | mean y: 2440468.12890625
[2025-12-16 19:37:17] 2025-12-16 18:36:27,480 | INFO     | intersect: -36185093873.72384
[2025-12-16 19:37:17] 2025-12-16 18:36:27,481 | INFO     | chi2: 4.898735882845565
[2025-12-16 19:37:17] 2025-12-16 18:36:27,481 | INFO     | current chi2=4.898735882845565 (change=13.057008835135708 %)
[2025-12-16 19:37:17] 2025-12-16 18:36:27,481 | INFO     | right removable region: 255
[2025-12-16 19:37:17] 2025-12-16 18:36:27,481 | INFO     | sum of square deviations: 5202255680.0
[2025-12-16 19:37:17] 2025-12-16 18:36:27,484 | INFO     | sum of deviations: 5850550900.5
[2025-12-16 19:37:17] 2025-12-16 18:36:27,484 | INFO     | mean x: 1765902301.5
[2025-12-16 19:37:17] 2025-12-16 18:36:27,484 | INFO     | mean y: 2475044.72265625
[2025-12-16 19:37:17] 2025-12-16 18:36:27,484 | INFO     | intersect: -1983490647.0358558
[2025-12-16 19:37:17] 2025-12-16 18:36:27,485 | INFO     | chi2: 1.4294253402119776
[2025-12-16 19:37:17] 2025-12-16 18:36:27,485 | INFO     | current chi2=1.4294253402119776 (change=74.63049290734725 %)
[2025-12-16 19:37:17] 2025-12-16 18:36:27,486 | INFO     | sum of square deviations: 4903347750.0
[2025-12-16 19:37:17] 2025-12-16 18:36:27,488 | INFO     | sum of deviations: -23436481820.0
[2025-12-16 19:37:17] 2025-12-16 18:36:27,488 | INFO     | mean x: 1765902454.0
[2025-12-16 19:37:17] 2025-12-16 18:36:27,488 | INFO     | mean y: 2489906.3665338648
[2025-12-16 19:37:17] 2025-12-16 18:36:27,488 | INFO     | intersect: 8442956067.279634
[2025-12-16 19:37:17] 2025-12-16 18:36:27,489 | INFO     | chi2: 0.819206034093947
[2025-12-16 19:37:17] 2025-12-16 18:36:27,489 | INFO     | current chi2=0.819206034093947 (change=42.68983408588082 %)
[2025-12-16 19:37:17] 2025-12-16 18:36:27,489 | INFO     | sum of square deviations: 4616114457.5
[2025-12-16 19:37:17] 2025-12-16 18:36:27,492 | INFO     | sum of deviations: -25979175716.5
[2025-12-16 19:37:17] 2025-12-16 18:36:27,492 | INFO     | mean x: 1765902606.5
[2025-12-16 19:37:17] 2025-12-16 18:36:27,492 | INFO     | mean y: 2491235.9471544717
[2025-12-16 19:37:17] 2025-12-16 18:36:27,492 | INFO     | intersect: 9940870046.713213
[2025-12-16 19:37:17] 2025-12-16 18:36:27,493 | INFO     | chi2: 0.8022394198519143
[2025-12-16 19:37:17] 2025-12-16 18:36:27,493 | INFO     | current chi2=0.8022394198519143 (change=2.071104647171944 %)
[2025-12-16 19:37:17] 2025-12-16 18:36:27,493 | INFO     | left removable region: 30
[2025-12-16 19:37:17] 2025-12-16 18:36:27,493 | INFO     | sum of square deviations: 3531973200.0
[2025-12-16 19:37:17] 2025-12-16 18:36:27,495 | INFO     | sum of deviations: -6316919964.999999
[2025-12-16 19:37:17] 2025-12-16 18:36:27,495 | INFO     | mean x: 1765902881.0
[2025-12-16 19:37:17] 2025-12-16 18:36:27,495 | INFO     | mean y: 2498337.9955555554
[2025-12-16 19:37:17] 2025-12-16 18:36:27,496 | INFO     | intersect: 3160808589.3983455
[2025-12-16 19:37:17] 2025-12-16 18:36:27,496 | INFO     | chi2: 0.013008074301092902
[2025-12-16 19:37:17] 2025-12-16 18:36:27,496 | INFO     | current memory leak: -1.79 B/s (using 225 data points, chi2=0.01)
[2025-12-16 19:37:17] 2025-12-16 18:36:27,497 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2025-12-16 19:37:17] 2025-12-16 18:36:27,497 | INFO     | ..............................
[2025-12-16 19:37:17] 2025-12-16 18:36:27,497 | INFO     | . Timing measurements:
[2025-12-16 19:37:17] 2025-12-16 18:36:27,497 | INFO     | . get job = 0 s
[2025-12-16 19:37:17] 2025-12-16 18:36:27,497 | INFO     | . initial setup = 6 s
[2025-12-16 19:37:17] 2025-12-16 18:36:27,498 | INFO     | . payload setup = 125 s
[2025-12-16 19:37:17] 2025-12-16 18:36:27,498 | INFO     | . stage-in = 0 s
[2025-12-16 19:37:17] 2025-12-16 18:36:27,498 | INFO     | . payload execution = 16016 s
[2025-12-16 19:37:17] 2025-12-16 18:36:27,498 | INFO     | . stage-out = 3 s
[2025-12-16 19:37:17] 2025-12-16 18:36:27,498 | INFO     | . log creation = 1 s
[2025-12-16 19:37:17] 2025-12-16 18:36:27,498 | INFO     | ..............................
[2025-12-16 19:37:17] 2025-12-16 18:36:27,622 | INFO     | 
[2025-12-16 19:37:17] 2025-12-16 18:36:27,622 | INFO     | job summary report
[2025-12-16 19:37:17] 2025-12-16 18:36:27,622 | INFO     | --------------------------------------------------
[2025-12-16 19:37:17] 2025-12-16 18:36:27,622 | INFO     | PanDA job id: 6930759033
[2025-12-16 19:37:17] 2025-12-16 18:36:27,622 | INFO     | task id: 47886831
[2025-12-16 19:37:17] 2025-12-16 18:36:27,623 | INFO     | errors: (none)
[2025-12-16 19:37:17] 2025-12-16 18:36:27,623 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 19:37:17] 2025-12-16 18:36:27,623 | INFO     | pilot state: finished 
[2025-12-16 19:37:17] 2025-12-16 18:36:27,623 | INFO     | transexitcode: 0
[2025-12-16 19:37:17] 2025-12-16 18:36:27,623 | INFO     | exeerrorcode: 0
[2025-12-16 19:37:17] 2025-12-16 18:36:27,623 | INFO     | exeerrordiag: 
[2025-12-16 19:37:17] 2025-12-16 18:36:27,623 | INFO     | exitcode: 0
[2025-12-16 19:37:17] 2025-12-16 18:36:27,623 | INFO     | exitmsg: OK
[2025-12-16 19:37:17] 2025-12-16 18:36:27,623 | INFO     | cpuconsumptiontime: 60912 s
[2025-12-16 19:37:17] 2025-12-16 18:36:27,623 | INFO     | nevents: 400
[2025-12-16 19:37:17] 2025-12-16 18:36:27,624 | INFO     | neventsw: 0
[2025-12-16 19:37:17] 2025-12-16 18:36:27,624 | INFO     | pid: 19131
[2025-12-16 19:37:17] 2025-12-16 18:36:27,624 | INFO     | pgrp: 19131
[2025-12-16 19:37:17] 2025-12-16 18:36:27,624 | INFO     | corecount: 8
[2025-12-16 19:37:17] 2025-12-16 18:36:27,624 | INFO     | event service: False
[2025-12-16 19:37:17] 2025-12-16 18:36:27,624 | INFO     | sizes: {0: 2283823, 1: 2284022, 12: 2284022, 23: 2284050, 34: 2284078, 44: 2284106, 55: 2284262, 66: 2284290, 77: 2284318, 87: 2274009, 88: 2284664, 98: 2284972, 1
[2025-12-16 19:37:17] 2025-12-16 18:36:27,624 | INFO     | --------------------------------------------------
[2025-12-16 19:37:17] 2025-12-16 18:36:27,624 | INFO     | 
[2025-12-16 19:37:17] 2025-12-16 18:36:27,624 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-12-16 19:37:17] 2025-12-16 18:36:28,002 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 19:37:17] 2025-12-16 18:36:28,002 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 19:37:17] 2025-12-16 18:36:28,002 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 19:37:17] 2025-12-16 18:36:28,002 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 19:37:17] 2025-12-16 18:36:28,003 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 19:37:17] 2025-12-16 18:36:28,003 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 19:37:17] 2025-12-16 18:36:28,003 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 19:37:17] 2025-12-16 18:36:28,003 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 19:37:17] 2025-12-16 18:36:28,003 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 19:37:17] 2025-12-16 18:36:28,003 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 19:37:17] 2025-12-16 18:36:28,003 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 19:37:17] 2025-12-16 18:36:28,003 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 19:37:17] 2025-12-16 18:36:28,004 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 19:37:17] 2025-12-16 18:36:28,004 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 19:37:17] 2025-12-16 18:36:28,004 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 19:37:17] 2025-12-16 18:36:28,004 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 19:37:17] 2025-12-16 18:36:28,004 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 19:37:17] 2025-12-16 18:36:28,004 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 19:37:17] 2025-12-16 18:36:28,004 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 19:37:17] 2025-12-16 18:36:28,004 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 19:37:17] 2025-12-16 18:36:28,005 | INFO     | job 6930759033 has completed (purged errors)
[2025-12-16 19:37:17] 2025-12-16 18:36:28,005 | INFO     | overall cleanup function is called
[2025-12-16 19:37:17] 2025-12-16 18:36:29,014 | INFO     | --- collectZombieJob: --- 10, [19131]
[2025-12-16 19:37:17] 2025-12-16 18:36:29,014 | INFO     | zombie collector waiting for pid 19131
[2025-12-16 19:37:17] 2025-12-16 18:36:29,015 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 19:37:17] 2025-12-16 18:36:29,015 | INFO     | collected zombie processes
[2025-12-16 19:37:17] 2025-12-16 18:36:29,015 | INFO     | will attempt to kill all subprocesses of pid=19131
[2025-12-16 19:37:17] 2025-12-16 18:36:29,160 | INFO     | process IDs to be killed: [19131] (in reverse order)
[2025-12-16 19:37:17] 2025-12-16 18:36:30,044 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 19:37:17] 2025-12-16 18:36:30,044 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 19:37:17] 2025-12-16 18:36:30,048 | INFO     | did not find any defunct processes belonging to 19131
[2025-12-16 19:37:17] 2025-12-16 18:36:30,053 | INFO     | did not find any defunct processes belonging to 19131
[2025-12-16 19:37:17] 2025-12-16 18:36:30,053 | INFO     | ready for new job
[2025-12-16 19:37:17] 2025-12-16 18:36:30,054 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 19:37:17] 2025-12-16 18:36:30,056 | INFO     | ***************************************
[2025-12-16 19:37:17] 2025-12-16 18:36:30,056 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 19:37:17] 2025-12-16 18:36:30,056 | INFO     | ***************************************
[2025-12-16 19:37:17] 2025-12-16 18:36:30,056 | INFO     | 
[2025-12-16 19:37:17] 2025-12-16 18:36:30,057 | INFO     | pilot is running in a VM
[2025-12-16 19:37:17] 2025-12-16 18:36:30,057 | INFO     | architecture information:
[2025-12-16 19:37:17] 2025-12-16 18:36:30,072 | INFO     | executing command: cat /etc/os-release
[2025-12-16 19:37:17] 2025-12-16 18:36:30,336 | INFO     | cat /etc/os-release:
[2025-12-16 19:37:17] NAME="CentOS Linux"
[2025-12-16 19:37:17] VERSION="7 (Core)"
[2025-12-16 19:37:17] ID="centos"
[2025-12-16 19:37:17] ID_LIKE="rhel fedora"
[2025-12-16 19:37:17] VERSION_ID="7"
[2025-12-16 19:37:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 19:37:17] ANSI_COLOR="0;31"
[2025-12-16 19:37:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 19:37:17] HOME_URL="https://www.centos.org/"
[2025-12-16 19:37:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 19:37:17] 
[2025-12-16 19:37:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 19:37:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 19:37:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 19:37:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 19:37:17] 
[2025-12-16 19:37:17] 2025-12-16 18:36:30,336 | INFO     | ***************************************
[2025-12-16 19:37:17] 2025-12-16 18:36:30,839 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-12-16 19:37:17] 2025-12-16 18:36:31,120 | INFO     | sufficient remaining disk space (496023633920 B)
[2025-12-16 19:37:17] 2025-12-16 18:36:31,120 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 19:37:17] 2025-12-16 18:36:31,120 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 19:37:17] 2025-12-16 18:36:31,120 | INFO     | update_server=False
[2025-12-16 19:37:17] 2025-12-16 18:36:31,121 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 19:37:17] 2025-12-16 18:36:31,121 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 19:37:17] 2025-12-16 18:36:31,308 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 19:37:17] 2025-12-16 18:36:31,308 | INFO     | aborting loop
[2025-12-16 19:37:17] 2025-12-16 18:36:31,352 | INFO     | all job control threads have been joined
[2025-12-16 19:37:17] 2025-12-16 18:36:31,754 | INFO     | all data control threads have been joined
[2025-12-16 19:37:17] 2025-12-16 18:36:31,809 | INFO     | all payload control threads have been joined
[2025-12-16 19:37:17] 2025-12-16 18:36:32,126 | INFO     | [job] retrieve thread has finished
[2025-12-16 19:37:17] 2025-12-16 18:36:32,208 | INFO     | [job] validate thread has finished
[2025-12-16 19:37:17] 2025-12-16 18:36:32,315 | INFO     | [job] job monitor thread has finished
[2025-12-16 19:37:17] 2025-12-16 18:36:32,358 | INFO     | [job] control thread has finished
[2025-12-16 19:37:17] 2025-12-16 18:36:32,424 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 19:37:17] 2025-12-16 18:36:32,433 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 19:37:17] 2025-12-16 18:36:32,635 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 19:37:17] 2025-12-16 18:36:32,639 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 19:37:17] 2025-12-16 18:36:32,760 | INFO     | [data] control thread has finished
[2025-12-16 19:37:17] 2025-12-16 18:36:32,815 | INFO     | [payload] control thread has finished
[2025-12-16 19:37:17] 2025-12-16 18:36:32,969 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 19:37:17] 2025-12-16 18:36:32,995 | INFO     | [payload] validate_post thread has finished
[2025-12-16 19:37:17] 2025-12-16 18:36:33,064 | INFO     | [data] copytool_in thread has finished
[2025-12-16 19:37:17] 2025-12-16 18:36:33,128 | INFO     | [data] copytool_out thread has finished
[2025-12-16 19:37:17] 2025-12-16 18:36:33,407 | INFO     | [payload] failed_post thread has finished
[2025-12-16 19:37:17] 2025-12-16 18:36:33,645 | INFO     | [job] queue monitor thread has finished
[2025-12-16 19:37:17] 2025-12-16 18:36:33,852 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 19:37:17] 2025-12-16 18:36:37,863 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 19:37:17] 2025-12-16 18:37:00,020 | INFO     | PID=12569 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 19:37:17] 2025-12-16 18:37:00,021 | INFO     | .. there are 9 such processes running
[2025-12-16 19:37:17] 2025-12-16 18:37:00,021 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 19:37:17] 2025-12-16 18:37:00,021 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 19:37:17] 2025-12-16 18:37:00,021 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 19:37:17] 2025-12-16 18:37:08,605 | INFO     | [monitor] cgroup control has ended
[2025-12-16 19:37:17] 2025-12-16 18:37:08,884 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140228822173504)>', '<ExcThread(monitor, started 140228215936768)>']
[2025-12-16 19:37:17] 2025-12-16 18:37:09,074 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 19:37:17] 2025-12-16 18:37:09,074 | INFO     | [monitor] control thread has ended
[2025-12-16 19:37:17] 2025-12-16 18:37:13,910 | INFO     | all workflow threads have been joined
[2025-12-16 19:37:17] 2025-12-16 18:37:13,910 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 19:37:17] 2025-12-16 18:37:13,911 | INFO     | traces error code: 0
[2025-12-16 19:37:17] 2025-12-16 18:37:13,911 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 19:37:17] 2025-12-16 18:37:14,177 [wrapper] ==== pilot stdout END ====
[2025-12-16 19:37:17] 2025-12-16 18:37:14,228 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 19:37:17] 2025-12-16 18:37:14,260 [wrapper] pilotpid: 12569
[2025-12-16 19:37:17] 2025-12-16 18:37:14,296 [wrapper] Pilot exit status: 0
[2025-12-16 19:37:17] 2025-12-16 18:37:14,633 [wrapper] pandaids: 6930759033
[2025-12-16 19:37:17] 2025-12-16 18:37:15,009 [wrapper] cleanup supervisor_pilot 14051 12570
[2025-12-16 19:37:17] 2025-12-16 18:37:15,100 [wrapper] Test setup, not cleaning
[2025-12-16 19:37:17] 2025-12-16 18:37:15,161 [wrapper] apfmon messages muted
[2025-12-16 19:37:17] 2025-12-16 18:37:15,195 [wrapper] ==== wrapper stdout END ====
[2025-12-16 19:37:17] 2025-12-16 18:37:15,225 [wrapper] ==== wrapper stderr END ====
[2025-12-16 19:37:17]  *** Error codes and diagnostics ***
[2025-12-16 19:37:17]     "exeErrorCode": 0,
[2025-12-16 19:37:17]     "exeErrorDiag": "",
[2025-12-16 19:37:17]     "pilotErrorCode": 0,
[2025-12-16 19:37:17]     "pilotErrorDiag": "",
[2025-12-16 19:37:17]  *** Listing of results directory ***
[2025-12-16 19:37:17] total 346080
[2025-12-16 19:37:17] -rw-r--r--. 1 boinc boinc    579449 Dec 16 05:16 pilot3.tar.gz
[2025-12-16 19:37:17] -rwx------. 1 boinc boinc     36322 Dec 16 05:20 runpilot2-wrapper.sh
[2025-12-16 19:37:17] -rw-r--r--. 1 boinc boinc      5112 Dec 16 05:22 queuedata.json
[2025-12-16 19:37:17] -rw-r--r--. 1 boinc boinc       100 Dec 16 14:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 19:37:17] -rwxr-xr-x. 1 boinc boinc      7986 Dec 16 14:58 run_atlas
[2025-12-16 19:37:17] -rw-r--r--. 1 boinc boinc       105 Dec 16 14:58 job.xml
[2025-12-16 19:37:17] -rw-r--r--. 1 boinc boinc      6391 Dec 16 14:58 init_data.xml
[2025-12-16 19:37:17] -rw-r--r--. 2 boinc boinc 192850605 Dec 16 14:58 EVNT.47886829._000472.pool.root.1
[2025-12-16 19:37:17] -rw-r--r--. 2 boinc boinc     15847 Dec 16 14:58 start_atlas.sh
[2025-12-16 19:37:17] drwxrwx--x. 2 boinc boinc        68 Dec 16 14:58 shared
[2025-12-16 19:37:17] -rw-r--r--. 2 boinc boinc    592420 Dec 16 14:58 input.tar.gz
[2025-12-16 19:37:17] -rw-r--r--. 1 boinc boinc         0 Dec 16 14:58 boinc_lockfile
[2025-12-16 19:37:17] -rw-r--r--. 1 boinc boinc      2539 Dec 16 14:59 pandaJob.out
[2025-12-16 19:37:17] -rw-------. 1 boinc boinc    987355 Dec 16 15:02 agis_schedconf.cvmfs.json
[2025-12-16 19:37:17] drwx------. 5 boinc boinc      4096 Dec 16 15:02 pilot3
[2025-12-16 19:37:17] -rw-------. 1 boinc boinc 152268332 Dec 16 19:33 HITS.47886831._011738.pool.root.1
[2025-12-16 19:37:17] -rw-r--r--. 1 boinc boinc       531 Dec 16 19:33 boinc_task_state.xml
[2025-12-16 19:37:17] -rw-------. 1 boinc boinc      1017 Dec 16 19:34 memory_monitor_summary.json
[2025-12-16 19:37:17] -rw-------. 1 boinc boinc   1516240 Dec 16 19:34 agis_ddmendpoints.agis.ALL.json
[2025-12-16 19:37:17] -rw-------. 1 boinc boinc    493730 Dec 16 19:34 log.47886831._011738.job.log.tgz.1
[2025-12-16 19:37:17] -rw-------. 1 boinc boinc        95 Dec 16 19:36 pilot_heartbeat.json
[2025-12-16 19:37:17] -rw-------. 1 boinc boinc      7775 Dec 16 19:36 heartbeat.json
[2025-12-16 19:37:17] -rw-r--r--. 1 boinc boinc        28 Dec 16 19:36 wrapper_checkpoint.txt
[2025-12-16 19:37:17] -rw-r--r--. 1 boinc boinc      8192 Dec 16 19:36 boinc_mmap_file
[2025-12-16 19:37:17] -rw-------. 1 boinc boinc      4885 Dec 16 19:37 pilotlog.txt
[2025-12-16 19:37:17] -rw-------. 1 boinc boinc   2191976 Dec 16 19:37 log.47886831._011738.job.log.1
[2025-12-16 19:37:17] -rw-------. 1 boinc boinc       357 Dec 16 19:37 output.list
[2025-12-16 19:37:17] -rw-r--r--. 1 boinc boinc       620 Dec 16 19:37 runtime_log
[2025-12-16 19:37:17] -rw-------. 1 boinc boinc   2703360 Dec 16 19:37 result.tar.gz
[2025-12-16 19:37:17] -rw-r--r--. 1 boinc boinc      8833 Dec 16 19:37 runtime_log.err
[2025-12-16 19:37:17] -rw-------. 1 boinc boinc       657 Dec 16 19:37 r5BLDmjibp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmC0UKDmPD0xOm.diag
[2025-12-16 19:37:17] -rw-r--r--. 1 boinc boinc     20756 Dec 16 19:37 stderr.txt
[2025-12-16 19:37:17] HITS file was successfully produced:
[2025-12-16 19:37:17] -rw-------. 1 boinc boinc 152268332 Dec 16 19:33 shared/HITS.pool.root.1
[2025-12-16 19:37:17]  *** Contents of shared directory: ***
[2025-12-16 19:37:17] total 340268
[2025-12-16 19:37:17] -rw-r--r--. 2 boinc boinc 192850605 Dec 16 14:58 ATLAS.root_0
[2025-12-16 19:37:17] -rw-r--r--. 2 boinc boinc     15847 Dec 16 14:58 start_atlas.sh
[2025-12-16 19:37:17] -rw-r--r--. 2 boinc boinc    592420 Dec 16 14:58 input.tar.gz
[2025-12-16 19:37:17] -rw-------. 1 boinc boinc 152268332 Dec 16 19:33 HITS.pool.root.1
[2025-12-16 19:37:17] -rw-------. 1 boinc boinc   2703360 Dec 16 19:37 result.tar.gz
19:37:19 (8789): run_atlas exited; CPU time 61151.368270
19:37:19 (8789): called boinc_finish(0)

</stderr_txt>
]]>

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