Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:22:07 (22789): wrapper (7.7.26015): starting
04:22:07 (22789): wrapper: running run_atlas (--nthreads 12)
[2025-12-16 04:22:07] Arguments: --nthreads 12
[2025-12-16 04:22:07] Threads: 12
[2025-12-16 04:22:07] Checking for CVMFS
[2025-12-16 04:22:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 04:22:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 04:22:07] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 04:22:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 04:22:08] 2.11.2.0 2998 132008 104500 154065 2 9 12186838 20275200 1 130560 0 56337770 99.957 5827509 35491 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 04:22:08] CVMFS is ok
[2025-12-16 04:22:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 04:22:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 04:22:08] Further information can be found at the LHC@home message board.
[2025-12-16 04:22:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 04:22:08] Checking for apptainer binary...
[2025-12-16 04:22:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 04:22:08] Running /usr/bin/apptainer --version
[2025-12-16 04:22:08] apptainer version 1.3.2-1.el7
[2025-12-16 04:22:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 04:22:09] c-205-12.aglt2.org
[2025-12-16 04:22:09] apptainer works
[2025-12-16 04:22:09] Set ATHENA_PROC_NUMBER=12
[2025-12-16 04:22:09] Set ATHENA_CORE_NUMBER=12
[2025-12-16 04:22:09] Starting ATLAS job with PandaID=6930662100
[2025-12-16 04:22:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 05:40:38]  *** The last 200 lines of the pilot log: ***
[2025-12-16 05:40:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-16 05:40:38]  replicas=None
[2025-12-16 05:40:38]  scope=mc23_13p6TeV
[2025-12-16 05:40:38]  status=None
[2025-12-16 05:40:38]  status_code=0
[2025-12-16 05:40:38]  storage_token=
[2025-12-16 05:40:38]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6930662100/log.47886831._011473.job.log.tgz.1
[2025-12-16 05:40:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/59/42/log.47886831._011473.job.log.tgz.1
[2025-12-16 05:40:38]  workdir=None
[2025-12-16 05:40:38] ]
[2025-12-16 05:40:38] 2025-12-16 10:39:31,603 | INFO     | transferring file log.47886831._011473.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6930662100/log.47886831._011473.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-16 05:40:38] 2025-12-16 10:39:31,603 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6930662100/log.47886831._011473.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886831._011473.job
[2025-12-16 05:40:38] 2025-12-16 10:39:31,626 | INFO     | adding to output.list: log.47886831._011473.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/59/42/log.47886831._011473.job.log.tg
[2025-12-16 05:40:38] 2025-12-16 10:39:31,627 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-16 05:40:38] 2025-12-16 10:39:31,627 | INFO     | summary of transferred files:
[2025-12-16 05:40:38] 2025-12-16 10:39:31,627 | INFO     |  -- lfn=log.47886831._011473.job.log.tgz.1, status_code=0, status=transferred
[2025-12-16 05:40:38] 2025-12-16 10:39:31,627 | INFO     | stage-out finished correctly
[2025-12-16 05:40:38] 2025-12-16 10:39:32,689 | INFO     | time since job start (4627s) is within the limit (174528.0s)
[2025-12-16 05:40:38] 2025-12-16 10:39:33,937 | INFO     | monitor loop #347: job 0:6930662100 is in state 'finished'
[2025-12-16 05:40:38] 2025-12-16 10:39:33,937 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 05:40:38] 2025-12-16 10:39:34,357 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-16 05:40:38] 2025-12-16 10:39:34,695 | INFO     | time since job start (4629s) is within the limit (174528.0s)
[2025-12-16 05:40:38] 2025-12-16 10:39:36,045 | INFO     | job 6930662100 has state=finished
[2025-12-16 05:40:38] 2025-12-16 10:39:36,046 | INFO     | preparing for final server update for job 6930662100 in state='finished'
[2025-12-16 05:40:38] 2025-12-16 10:39:36,046 | INFO     | this job has now completed (state=finished)
[2025-12-16 05:40:38] 2025-12-16 10:39:36,047 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-16 05:40:38] 2025-12-16 10:39:36,047 | INFO     | log transfer has been attempted: DONE
[2025-12-16 05:40:38] 2025-12-16 10:39:36,047 | INFO     | job 6930662100 has finished - writing final server update
[2025-12-16 05:40:38] 2025-12-16 10:39:36,047 | INFO     | total number of processed events: 400 (read)
[2025-12-16 05:40:38] 2025-12-16 10:39:36,048 | INFO     | executing command: lscpu
[2025-12-16 05:40:38] 2025-12-16 10:39:36,075 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 05:40:38] 2025-12-16 10:39:36,441 | INFO     | monitor loop #348: job 0:6930662100 is in state 'finished'
[2025-12-16 05:40:38] 2025-12-16 10:39:36,441 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 05:40:38] 2025-12-16 10:39:36,701 | INFO     | time since job start (4631s) is within the limit (174528.0s)
[2025-12-16 05:40:38] 2025-12-16 10:39:38,706 | INFO     | time since job start (4633s) is within the limit (174528.0s)
[2025-12-16 05:40:38] 2025-12-16 10:39:38,944 | INFO     | monitor loop #349: job 0:6930662100 is in state 'finished'
[2025-12-16 05:40:38] 2025-12-16 10:39:38,945 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 05:40:38] 2025-12-16 10:39:40,712 | INFO     | time since job start (4635s) is within the limit (174528.0s)
[2025-12-16 05:40:38] 2025-12-16 10:39:40,869 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-16 05:40:38] 2025-12-16 10:39:40,872 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1717.9166666666667
[2025-12-16 05:40:38] 2025-12-16 10:39:40,875 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6930662100/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 05:40:38] 2025-12-16 10:39:40,875 | INFO     | extracted standard info from prmon json
[2025-12-16 05:40:38] 2025-12-16 10:39:40,876 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 05:40:38] 2025-12-16 10:39:40,876 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 05:40:38] 2025-12-16 10:39:40,876 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 05:40:38] 2025-12-16 10:39:40,877 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 05:40:38] 2025-12-16 10:39:40,879 | INFO     | fitting pss+swap vs Time
[2025-12-16 05:40:38] 2025-12-16 10:39:40,879 | INFO     | sum of square deviations: 101843770.0
[2025-12-16 05:40:38] 2025-12-16 10:39:40,880 | INFO     | sum of deviations: -5651695383.999999
[2025-12-16 05:40:38] 2025-12-16 10:39:40,880 | INFO     | mean x: 1765879353.0
[2025-12-16 05:40:38] 2025-12-16 10:39:40,880 | INFO     | mean y: 2849952.4492753623
[2025-12-16 05:40:38] 2025-12-16 10:39:40,881 | INFO     | intersect: 97998163637.82253
[2025-12-16 05:40:38] 2025-12-16 10:39:40,881 | INFO     | chi2: 0.14363783763643667
[2025-12-16 05:40:38] 2025-12-16 10:39:40,881 | INFO     | current memory leak: -55.49 B/s (using 69 data points, chi2=0.14)
[2025-12-16 05:40:38] 2025-12-16 10:39:40,881 | INFO     | could have reported an average CPU frequency of 2045 MHz (6 samples)
[2025-12-16 05:40:38] 2025-12-16 10:39:40,881 | INFO     | ..............................
[2025-12-16 05:40:38] 2025-12-16 10:39:40,881 | INFO     | . Timing measurements:
[2025-12-16 05:40:38] 2025-12-16 10:39:40,882 | INFO     | . get job = 0 s
[2025-12-16 05:40:38] 2025-12-16 10:39:40,882 | INFO     | . initial setup = 2 s
[2025-12-16 05:40:38] 2025-12-16 10:39:40,882 | INFO     | . payload setup = 7 s
[2025-12-16 05:40:38] 2025-12-16 10:39:40,882 | INFO     | . stage-in = 0 s
[2025-12-16 05:40:38] 2025-12-16 10:39:40,882 | INFO     | . payload execution = 4597 s
[2025-12-16 05:40:38] 2025-12-16 10:39:40,882 | INFO     | . stage-out = 0 s
[2025-12-16 05:40:38] 2025-12-16 10:39:40,882 | INFO     | . log creation = 0 s
[2025-12-16 05:40:38] 2025-12-16 10:39:40,882 | INFO     | ..............................
[2025-12-16 05:40:38] 2025-12-16 10:39:40,963 | INFO     | 
[2025-12-16 05:40:38] 2025-12-16 10:39:40,963 | INFO     | job summary report
[2025-12-16 05:40:38] 2025-12-16 10:39:40,963 | INFO     | --------------------------------------------------
[2025-12-16 05:40:38] 2025-12-16 10:39:40,963 | INFO     | PanDA job id: 6930662100
[2025-12-16 05:40:38] 2025-12-16 10:39:40,963 | INFO     | task id: 47886831
[2025-12-16 05:40:38] 2025-12-16 10:39:40,963 | INFO     | errors: (none)
[2025-12-16 05:40:38] 2025-12-16 10:39:40,964 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 05:40:38] 2025-12-16 10:39:40,964 | INFO     | pilot state: finished 
[2025-12-16 05:40:38] 2025-12-16 10:39:40,964 | INFO     | transexitcode: 0
[2025-12-16 05:40:38] 2025-12-16 10:39:40,964 | INFO     | exeerrorcode: 0
[2025-12-16 05:40:38] 2025-12-16 10:39:40,964 | INFO     | exeerrordiag: 
[2025-12-16 05:40:38] 2025-12-16 10:39:40,964 | INFO     | exitcode: 0
[2025-12-16 05:40:38] 2025-12-16 10:39:40,964 | INFO     | exitmsg: OK
[2025-12-16 05:40:38] 2025-12-16 10:39:40,964 | INFO     | cpuconsumptiontime: 47976 s
[2025-12-16 05:40:38] 2025-12-16 10:39:40,965 | INFO     | nevents: 400
[2025-12-16 05:40:38] 2025-12-16 10:39:40,965 | INFO     | neventsw: 0
[2025-12-16 05:40:38] 2025-12-16 10:39:40,965 | INFO     | pid: 363
[2025-12-16 05:40:38] 2025-12-16 10:39:40,965 | INFO     | pgrp: 363
[2025-12-16 05:40:38] 2025-12-16 10:39:40,965 | INFO     | corecount: 12
[2025-12-16 05:40:38] 2025-12-16 10:39:40,965 | INFO     | event service: False
[2025-12-16 05:40:38] 2025-12-16 10:39:40,965 | INFO     | sizes: {0: 2283766, 1: 2284021, 6: 2284283, 12: 2284311, 4608: 2310434, 4610: 2319432, 4613: 2319616, 4619: 2319810}
[2025-12-16 05:40:38] 2025-12-16 10:39:40,965 | INFO     | --------------------------------------------------
[2025-12-16 05:40:38] 2025-12-16 10:39:40,966 | INFO     | 
[2025-12-16 05:40:38] 2025-12-16 10:39:40,966 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-16 05:40:38] 2025-12-16 10:39:40,990 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 05:40:38] 2025-12-16 10:39:40,991 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 05:40:38] 2025-12-16 10:39:40,991 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 05:40:38] 2025-12-16 10:39:40,991 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 05:40:38] 2025-12-16 10:39:40,991 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 05:40:38] 2025-12-16 10:39:40,991 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 05:40:38] 2025-12-16 10:39:40,991 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 05:40:38] 2025-12-16 10:39:40,992 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 05:40:38] 2025-12-16 10:39:40,992 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 05:40:38] 2025-12-16 10:39:40,992 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 05:40:38] 2025-12-16 10:39:40,992 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 05:40:38] 2025-12-16 10:39:40,992 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 05:40:38] 2025-12-16 10:39:40,992 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 05:40:38] 2025-12-16 10:39:40,993 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 05:40:38] 2025-12-16 10:39:40,993 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 05:40:38] 2025-12-16 10:39:40,993 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 05:40:38] 2025-12-16 10:39:40,993 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 05:40:38] 2025-12-16 10:39:40,993 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 05:40:38] 2025-12-16 10:39:40,993 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 05:40:38] 2025-12-16 10:39:40,994 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 05:40:38] 2025-12-16 10:39:40,994 | INFO     | job 6930662100 has completed (purged errors)
[2025-12-16 05:40:38] 2025-12-16 10:39:40,994 | INFO     | overall cleanup function is called
[2025-12-16 05:40:38] 2025-12-16 10:39:41,830 | INFO     | PID=26466 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 05:40:38] 2025-12-16 10:39:42,000 | INFO     | --- collectZombieJob: --- 10, [363]
[2025-12-16 05:40:38] 2025-12-16 10:39:42,000 | INFO     | zombie collector waiting for pid 363
[2025-12-16 05:40:38] 2025-12-16 10:39:42,000 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 05:40:38] 2025-12-16 10:39:42,001 | INFO     | collected zombie processes
[2025-12-16 05:40:38] 2025-12-16 10:39:42,001 | INFO     | will attempt to kill all subprocesses of pid=363
[2025-12-16 05:40:38] 2025-12-16 10:39:42,090 | INFO     | process IDs to be killed: [363] (in reverse order)
[2025-12-16 05:40:38] 2025-12-16 10:39:42,139 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 05:40:38] 2025-12-16 10:39:42,140 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 05:40:38] 2025-12-16 10:39:42,142 | INFO     | did not find any defunct processes belonging to 363
[2025-12-16 05:40:38] 2025-12-16 10:39:42,145 | INFO     | did not find any defunct processes belonging to 363
[2025-12-16 05:40:38] 2025-12-16 10:39:42,145 | INFO     | ready for new job
[2025-12-16 05:40:38] 2025-12-16 10:39:42,145 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 05:40:38] 2025-12-16 10:39:42,146 | INFO     | ***************************************
[2025-12-16 05:40:38] 2025-12-16 10:39:42,146 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 05:40:38] 2025-12-16 10:39:42,146 | INFO     | ***************************************
[2025-12-16 05:40:38] 2025-12-16 10:39:42,146 | INFO     | 
[2025-12-16 05:40:38] 2025-12-16 10:39:42,147 | INFO     | architecture information:
[2025-12-16 05:40:38] 2025-12-16 10:39:42,147 | INFO     | executing command: cat /etc/os-release
[2025-12-16 05:40:38] 2025-12-16 10:39:42,164 | INFO     | cat /etc/os-release:
[2025-12-16 05:40:38] NAME="CentOS Linux"
[2025-12-16 05:40:38] VERSION="7 (Core)"
[2025-12-16 05:40:38] ID="centos"
[2025-12-16 05:40:38] ID_LIKE="rhel fedora"
[2025-12-16 05:40:38] VERSION_ID="7"
[2025-12-16 05:40:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 05:40:38] ANSI_COLOR="0;31"
[2025-12-16 05:40:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 05:40:38] HOME_URL="https://www.centos.org/"
[2025-12-16 05:40:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 05:40:38] 
[2025-12-16 05:40:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 05:40:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 05:40:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 05:40:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 05:40:38] 
[2025-12-16 05:40:38] 2025-12-16 10:39:42,164 | INFO     | ***************************************
[2025-12-16 05:40:38] 2025-12-16 10:39:42,667 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 05:40:38] 2025-12-16 10:39:42,685 | INFO     | sufficient remaining disk space (29450305536 B)
[2025-12-16 05:40:38] 2025-12-16 10:39:42,685 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 05:40:38] 2025-12-16 10:39:42,686 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 05:40:38] 2025-12-16 10:39:42,686 | INFO     | update_server=False
[2025-12-16 05:40:38] 2025-12-16 10:39:42,686 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 05:40:38] 2025-12-16 10:39:42,686 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-16 05:40:38] 2025-12-16 10:39:42,687 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 05:40:38] 2025-12-16 10:39:42,687 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 05:40:38] 2025-12-16 10:39:42,687 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 05:40:38] 2025-12-16 10:39:42,687 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 05:40:38] 2025-12-16 10:39:42,688 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 05:40:38] 2025-12-16 10:39:42,688 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 05:40:38] 2025-12-16 10:39:42,688 | INFO     | aborting loop
[2025-12-16 05:40:38] 2025-12-16 10:39:42,804 | INFO     | all data control threads have been joined
[2025-12-16 05:40:38] 2025-12-16 10:39:43,692 | INFO     | [job] retrieve thread has finished
[2025-12-16 05:40:38] 2025-12-16 10:39:43,694 | INFO     | [job] queue monitor thread has finished
[2025-12-16 05:40:38] 2025-12-16 10:39:43,694 | INFO     | [job] job monitor thread has finished
[2025-12-16 05:40:38] 2025-12-16 10:39:43,699 | INFO     | [job] validate thread has finished
[2025-12-16 05:40:38] 2025-12-16 10:39:43,702 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 05:40:38] 2025-12-16 10:39:43,763 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 05:40:38] 2025-12-16 10:39:43,810 | INFO     | [data] control thread has finished
[2025-12-16 05:40:38] 2025-12-16 10:39:43,851 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 05:40:38] 2025-12-16 10:39:43,914 | INFO     | all job control threads have been joined
[2025-12-16 05:40:38] 2025-12-16 10:39:43,930 | INFO     | all payload control threads have been joined
[2025-12-16 05:40:38] 2025-12-16 10:39:43,988 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 05:40:38] 2025-12-16 10:39:44,084 | INFO     | [payload] failed_post thread has finished
[2025-12-16 05:40:38] 2025-12-16 10:39:44,341 | INFO     | [data] copytool_in thread has finished
[2025-12-16 05:40:38] 2025-12-16 10:39:44,692 | INFO     | [data] copytool_out thread has finished
[2025-12-16 05:40:38] 2025-12-16 10:39:44,920 | INFO     | [job] control thread has finished
[2025-12-16 05:40:38] 2025-12-16 10:39:44,935 | INFO     | [payload] control thread has finished
[2025-12-16 05:40:38] 2025-12-16 10:39:44,945 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 05:40:38] 2025-12-16 10:39:45,007 | INFO     | [payload] validate_post thread has finished
[2025-12-16 05:40:38] 2025-12-16 10:39:48,951 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 05:40:38] 2025-12-16 10:40:32,074 | INFO     | [monitor] cgroup control has ended
[2025-12-16 05:40:38] 2025-12-16 10:40:33,259 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139628188567360)>', '<ExcThread(monitor, started 139627222521600)>']
[2025-12-16 05:40:38] 2025-12-16 10:40:33,924 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 05:40:38] 2025-12-16 10:40:33,924 | INFO     | [monitor] control thread has ended
[2025-12-16 05:40:38] 2025-12-16 10:40:38,271 | INFO     | all workflow threads have been joined
[2025-12-16 05:40:38] 2025-12-16 10:40:38,271 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 05:40:38] 2025-12-16 10:40:38,271 | INFO     | traces error code: 0
[2025-12-16 05:40:38] 2025-12-16 10:40:38,271 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 05:40:38] 2025-12-16 10:40:38,368 [wrapper] ==== pilot stdout END ====
[2025-12-16 05:40:38] 2025-12-16 10:40:38,371 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 05:40:38] 2025-12-16 10:40:38,375 [wrapper] pilotpid: 26466
[2025-12-16 05:40:38] 2025-12-16 10:40:38,379 [wrapper] Pilot exit status: 0
[2025-12-16 05:40:38] 2025-12-16 10:40:38,396 [wrapper] pandaids: 6930662100
[2025-12-16 05:40:38] 2025-12-16 10:40:38,441 [wrapper] cleanup supervisor_pilot 30136 26467
[2025-12-16 05:40:38] 2025-12-16 10:40:38,444 [wrapper] Test setup, not cleaning
[2025-12-16 05:40:38] 2025-12-16 10:40:38,448 [wrapper] apfmon messages muted
[2025-12-16 05:40:38] 2025-12-16 10:40:38,452 [wrapper] ==== wrapper stdout END ====
[2025-12-16 05:40:38] 2025-12-16 10:40:38,456 [wrapper] ==== wrapper stderr END ====
[2025-12-16 05:40:38]  *** Error codes and diagnostics ***
[2025-12-16 05:40:38]     "exeErrorCode": 0,
[2025-12-16 05:40:38]     "exeErrorDiag": "",
[2025-12-16 05:40:38]     "pilotErrorCode": 0,
[2025-12-16 05:40:38]     "pilotErrorDiag": "",
[2025-12-16 05:40:38]  *** Listing of results directory ***
[2025-12-16 05:40:38] total 338980
[2025-12-16 05:40:38] -rw-r--r-- 1 boincer umatlas    579449 Dec 15 23:16 pilot3.tar.gz
[2025-12-16 05:40:38] -rwx------ 1 boincer umatlas     36322 Dec 15 23:19 runpilot2-wrapper.sh
[2025-12-16 05:40:38] -rw-r--r-- 1 boincer umatlas      5112 Dec 15 23:22 queuedata.json
[2025-12-16 05:40:38] -rw-r--r-- 1 boincer umatlas       100 Dec 16 04:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 05:40:38] -rwxr-xr-x 1 boincer umatlas      7986 Dec 16 04:22 run_atlas
[2025-12-16 05:40:38] -rw-r--r-- 1 boincer umatlas       105 Dec 16 04:22 job.xml
[2025-12-16 05:40:38] -rw-r--r-- 2 boincer umatlas 196016675 Dec 16 04:22 EVNT.47886829._000414.pool.root.1
[2025-12-16 05:40:38] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 04:22 start_atlas.sh
[2025-12-16 05:40:38] drwxrwx--x 2 boincer umatlas      4096 Dec 16 04:22 shared
[2025-12-16 05:40:38] -rw-r--r-- 2 boincer umatlas    592418 Dec 16 04:22 input.tar.gz
[2025-12-16 05:40:38] -rw-r--r-- 1 boincer umatlas         0 Dec 16 04:22 boinc_lockfile
[2025-12-16 05:40:38] -rw-r--r-- 1 boincer umatlas      2539 Dec 16 04:22 pandaJob.out
[2025-12-16 05:40:38] -rw------- 1 boincer umatlas        57 Dec 16 04:22 setup.sh.local
[2025-12-16 05:40:38] -rw------- 1 boincer umatlas    994525 Dec 16 04:22 agis_schedconf.cvmfs.json
[2025-12-16 05:40:38] -rw------- 1 boincer umatlas   1516240 Dec 16 04:22 agis_ddmendpoints.agis.ALL.json
[2025-12-16 05:40:38] drwx------ 5 boincer umatlas      4096 Dec 16 04:22 pilot3
[2025-12-16 05:40:38] -rw------- 1 boincer umatlas 145049716 Dec 16 05:39 HITS.47886831._011473.pool.root.1
[2025-12-16 05:40:38] -rw-r--r-- 1 boincer umatlas       529 Dec 16 05:39 boinc_task_state.xml
[2025-12-16 05:40:38] -rw------- 1 boincer umatlas        95 Dec 16 05:39 pilot_heartbeat.json
[2025-12-16 05:40:38] -rw------- 1 boincer umatlas      1046 Dec 16 05:39 memory_monitor_summary.json
[2025-12-16 05:40:38] -rw------- 1 boincer umatlas    394672 Dec 16 05:39 log.47886831._011473.job.log.tgz.1
[2025-12-16 05:40:38] -rw-r--r-- 1 boincer umatlas      5953 Dec 16 05:39 init_data.xml
[2025-12-16 05:40:38] -rw------- 1 boincer umatlas      7851 Dec 16 05:39 heartbeat.json
[2025-12-16 05:40:38] -rw-r--r-- 1 boincer umatlas      8192 Dec 16 05:40 boinc_mmap_file
[2025-12-16 05:40:38] -rw-r--r-- 1 boincer umatlas        27 Dec 16 05:40 wrapper_checkpoint.txt
[2025-12-16 05:40:38] -rw------- 1 boincer umatlas      4552 Dec 16 05:40 pilotlog.txt
[2025-12-16 05:40:38] -rw------- 1 boincer umatlas    671275 Dec 16 05:40 log.47886831._011473.job.log.1
[2025-12-16 05:40:38] -rw------- 1 boincer umatlas       357 Dec 16 05:40 output.list
[2025-12-16 05:40:38] -rw-r--r-- 1 boincer umatlas       620 Dec 16 05:40 runtime_log
[2025-12-16 05:40:38] -rw------- 1 boincer umatlas   1085440 Dec 16 05:40 result.tar.gz
[2025-12-16 05:40:38] -rw-r--r-- 1 boincer umatlas      9344 Dec 16 05:40 runtime_log.err
[2025-12-16 05:40:38] -rw------- 1 boincer umatlas       659 Dec 16 05:40 BOJNDmYibp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7yUKDmpTHvon.diag
[2025-12-16 05:40:38] -rw-r--r-- 1 boincer umatlas     21954 Dec 16 05:40 stderr.txt
[2025-12-16 05:40:38] HITS file was successfully produced:
[2025-12-16 05:40:38] -rw------- 1 boincer umatlas 145049716 Dec 16 05:39 shared/HITS.pool.root.1
[2025-12-16 05:40:38]  *** Contents of shared directory: ***
[2025-12-16 05:40:38] total 334736
[2025-12-16 05:40:38] -rw-r--r-- 2 boincer umatlas 196016675 Dec 16 04:22 ATLAS.root_0
[2025-12-16 05:40:38] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 04:22 start_atlas.sh
[2025-12-16 05:40:38] -rw-r--r-- 2 boincer umatlas    592418 Dec 16 04:22 input.tar.gz
[2025-12-16 05:40:38] -rw------- 1 boincer umatlas 145049716 Dec 16 05:39 HITS.pool.root.1
[2025-12-16 05:40:38] -rw------- 1 boincer umatlas   1085440 Dec 16 05:40 result.tar.gz
05:40:40 (22789): run_atlas exited; CPU time 47953.036023
05:40:40 (22789): called boinc_finish(0)

</stderr_txt>
]]>

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