Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:36:36 (18302): wrapper (7.7.26015): starting
15:36:36 (18302): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 15:36:36] Arguments: --nthreads 8
[2025-12-16 15:36:36] Threads: 8
[2025-12-16 15:36:36] Checking for CVMFS
[2025-12-16 15:36:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 15:36:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 15:36:38] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 15:36:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 15:36:39] 2.11.2.0 6904 984 58352 154073 1 268 13012779 25165824 4699 130560 0 1061683 99.989 191027 2134 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-16 15:36:39] CVMFS is ok
[2025-12-16 15:36:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 15:36:39] Checking for apptainer binary...
[2025-12-16 15:36:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 15:36:39] Running /usr/bin/apptainer --version
[2025-12-16 15:36:39] apptainer version 1.3.2-1.el7
[2025-12-16 15:36:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 15:36:48] cg-vwn474.simple-grid.lan
[2025-12-16 15:36:48] apptainer works
[2025-12-16 15:36:49] Set ATHENA_PROC_NUMBER=8
[2025-12-16 15:36:49] Set ATHENA_CORE_NUMBER=8
[2025-12-16 15:36:49] Starting ATLAS job with PandaID=6930662143
[2025-12-16 15:36:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 19:57:01]  *** The last 200 lines of the pilot log: ***
[2025-12-16 19:57:01] 2025-12-16 18:56:21,576 | INFO     | time since job start (15362s) is within the limit (174528.0s)
[2025-12-16 19:57:01] 2025-12-16 18:56:22,757 | INFO     | PID=22112 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 19:57:01] 2025-12-16 18:56:22,757 | INFO     | .. there are 9 such processes running
[2025-12-16 19:57:01] 2025-12-16 18:56:23,198 | INFO     | monitor loop #1114: job 0:6930662143 is in state 'finished'
[2025-12-16 19:57:01] 2025-12-16 18:56:23,198 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 19:57:01] 2025-12-16 18:56:23,618 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 19:57:01] 2025-12-16 18:56:23,619 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-12-16 19:57:01] 2025-12-16 18:56:23,621 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6930662143/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 19:57:01] 2025-12-16 18:56:23,622 | INFO     | extracted standard info from prmon json
[2025-12-16 19:57:01] 2025-12-16 18:56:23,622 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 19:57:01] 2025-12-16 18:56:23,622 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 19:57:01] 2025-12-16 18:56:23,622 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 19:57:01] 2025-12-16 18:56:23,622 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 19:57:01] 2025-12-16 18:56:23,627 | INFO     | fitting pss+swap vs Time
[2025-12-16 19:57:01] 2025-12-16 18:56:23,628 | INFO     | sum of square deviations: 4449281562.0
[2025-12-16 19:57:01] 2025-12-16 18:56:23,630 | INFO     | sum of deviations: 60042874315.00001
[2025-12-16 19:57:01] 2025-12-16 18:56:23,630 | INFO     | mean x: 1765903851.0
[2025-12-16 19:57:01] 2025-12-16 18:56:23,630 | INFO     | mean y: 2433435.5102880658
[2025-12-16 19:57:01] 2025-12-16 18:56:23,630 | INFO     | intersect: -23828367447.83635
[2025-12-16 19:57:01] 2025-12-16 18:56:23,630 | INFO     | chi2: 4.847871717885546
[2025-12-16 19:57:01] 2025-12-16 18:56:23,631 | INFO     | sum of square deviations: 4180243959.5
[2025-12-16 19:57:01] 2025-12-16 18:56:23,644 | INFO     | sum of deviations: 74624492373.99997
[2025-12-16 19:57:01] 2025-12-16 18:56:23,644 | INFO     | mean x: 1765903698.5
[2025-12-16 19:57:01] 2025-12-16 18:56:23,644 | INFO     | mean y: 2441549.2268907563
[2025-12-16 19:57:01] 2025-12-16 18:56:23,644 | INFO     | intersect: -31521954720.14629
[2025-12-16 19:57:01] 2025-12-16 18:56:23,645 | INFO     | chi2: 4.102888034393118
[2025-12-16 19:57:01] 2025-12-16 18:56:23,645 | INFO     | current chi2=4.102888034393118 (change=15.367231784288249 %)
[2025-12-16 19:57:01] 2025-12-16 18:56:23,645 | INFO     | right removable region: 237
[2025-12-16 19:57:01] 2025-12-16 18:56:23,645 | INFO     | sum of square deviations: 4180243959.5
[2025-12-16 19:57:01] 2025-12-16 18:56:23,647 | INFO     | sum of deviations: -16372523159.0
[2025-12-16 19:57:01] 2025-12-16 18:56:23,647 | INFO     | mean x: 1765904003.5
[2025-12-16 19:57:01] 2025-12-16 18:56:23,647 | INFO     | mean y: 2476673.5546218487
[2025-12-16 19:57:01] 2025-12-16 18:56:23,648 | INFO     | intersect: 6918892192.359121
[2025-12-16 19:57:01] 2025-12-16 18:56:23,648 | INFO     | chi2: 0.9532375978604752
[2025-12-16 19:57:01] 2025-12-16 18:56:23,648 | INFO     | current chi2=0.9532375978604752 (change=80.3369879952962 %)
[2025-12-16 19:57:01] 2025-12-16 18:56:23,648 | INFO     | sum of square deviations: 3922276332.0
[2025-12-16 19:57:01] 2025-12-16 18:56:23,650 | INFO     | sum of deviations: -22434379066.0
[2025-12-16 19:57:01] 2025-12-16 18:56:23,650 | INFO     | mean x: 1765904156.0
[2025-12-16 19:57:01] 2025-12-16 18:56:23,650 | INFO     | mean y: 2480196.9613733906
[2025-12-16 19:57:01] 2025-12-16 18:56:23,651 | INFO     | intersect: 10102983036.7824
[2025-12-16 19:57:01] 2025-12-16 18:56:23,651 | INFO     | chi2: 0.8794920332973499
[2025-12-16 19:57:01] 2025-12-16 18:56:23,651 | INFO     | current chi2=0.8794920332973499 (change=7.736325626333447 %)
[2025-12-16 19:57:01] 2025-12-16 18:56:23,651 | INFO     | left removable region: 20
[2025-12-16 19:57:01] 2025-12-16 18:56:23,651 | INFO     | sum of square deviations: 3168461268.0
[2025-12-16 19:57:01] 2025-12-16 18:56:23,653 | INFO     | sum of deviations: 7440548078.0
[2025-12-16 19:57:01] 2025-12-16 18:56:23,653 | INFO     | mean x: 1765904278.0
[2025-12-16 19:57:01] 2025-12-16 18:56:23,653 | INFO     | mean y: 2480269.129032258
[2025-12-16 19:57:01] 2025-12-16 18:56:23,653 | INFO     | intersect: -4144420882.6400347
[2025-12-16 19:57:01] 2025-12-16 18:56:23,654 | INFO     | chi2: 0.0009672909783971543
[2025-12-16 19:57:01] 2025-12-16 18:56:23,654 | INFO     | current memory leak: 2.35 B/s (using 217 data points, chi2=0.00)
[2025-12-16 19:57:01] 2025-12-16 18:56:23,654 | INFO     | could have reported an average CPU frequency of 2249 MHz (11 samples)
[2025-12-16 19:57:01] 2025-12-16 18:56:23,655 | INFO     | ..............................
[2025-12-16 19:57:01] 2025-12-16 18:56:23,655 | INFO     | . Timing measurements:
[2025-12-16 19:57:01] 2025-12-16 18:56:23,655 | INFO     | . get job = 0 s
[2025-12-16 19:57:01] 2025-12-16 18:56:23,655 | INFO     | . initial setup = 8 s
[2025-12-16 19:57:01] 2025-12-16 18:56:23,655 | INFO     | . payload setup = 114 s
[2025-12-16 19:57:01] 2025-12-16 18:56:23,655 | INFO     | . stage-in = 0 s
[2025-12-16 19:57:01] 2025-12-16 18:56:23,655 | INFO     | . payload execution = 14970 s
[2025-12-16 19:57:01] 2025-12-16 18:56:23,655 | INFO     | . stage-out = 3 s
[2025-12-16 19:57:01] 2025-12-16 18:56:23,655 | INFO     | . log creation = 0 s
[2025-12-16 19:57:01] 2025-12-16 18:56:23,655 | INFO     | ..............................
[2025-12-16 19:57:01] 2025-12-16 18:56:23,768 | INFO     | time since job start (15364s) is within the limit (174528.0s)
[2025-12-16 19:57:01] 2025-12-16 18:56:24,248 | INFO     | 
[2025-12-16 19:57:01] 2025-12-16 18:56:24,248 | INFO     | job summary report
[2025-12-16 19:57:01] 2025-12-16 18:56:24,248 | INFO     | --------------------------------------------------
[2025-12-16 19:57:01] 2025-12-16 18:56:24,249 | INFO     | PanDA job id: 6930662143
[2025-12-16 19:57:01] 2025-12-16 18:56:24,249 | INFO     | task id: 47886831
[2025-12-16 19:57:01] 2025-12-16 18:56:24,249 | INFO     | errors: (none)
[2025-12-16 19:57:01] 2025-12-16 18:56:24,249 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 19:57:01] 2025-12-16 18:56:24,249 | INFO     | pilot state: finished 
[2025-12-16 19:57:01] 2025-12-16 18:56:24,249 | INFO     | transexitcode: 0
[2025-12-16 19:57:01] 2025-12-16 18:56:24,249 | INFO     | exeerrorcode: 0
[2025-12-16 19:57:01] 2025-12-16 18:56:24,249 | INFO     | exeerrordiag: 
[2025-12-16 19:57:01] 2025-12-16 18:56:24,249 | INFO     | exitcode: 0
[2025-12-16 19:57:01] 2025-12-16 18:56:24,249 | INFO     | exitmsg: OK
[2025-12-16 19:57:01] 2025-12-16 18:56:24,250 | INFO     | cpuconsumptiontime: 56341 s
[2025-12-16 19:57:01] 2025-12-16 18:56:24,250 | INFO     | nevents: 400
[2025-12-16 19:57:01] 2025-12-16 18:56:24,250 | INFO     | neventsw: 0
[2025-12-16 19:57:01] 2025-12-16 18:56:24,250 | INFO     | pid: 28650
[2025-12-16 19:57:01] 2025-12-16 18:56:24,250 | INFO     | pgrp: 28650
[2025-12-16 19:57:01] 2025-12-16 18:56:24,250 | INFO     | corecount: 8
[2025-12-16 19:57:01] 2025-12-16 18:56:24,250 | INFO     | event service: False
[2025-12-16 19:57:01] 2025-12-16 18:56:24,250 | INFO     | sizes: {0: 2283822, 1: 2284021, 12: 2284021, 23: 2284049, 33: 2284077, 44: 2284133, 55: 2284289, 66: 2284317, 76: 2284345, 86: 2284663, 87: 2284691, 15089: 2315339
[2025-12-16 19:57:01] 2025-12-16 18:56:24,250 | INFO     | --------------------------------------------------
[2025-12-16 19:57:01] 2025-12-16 18:56:24,250 | INFO     | 
[2025-12-16 19:57:01] 2025-12-16 18:56:24,250 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-12-16 19:57:01] 2025-12-16 18:56:24,767 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 19:57:01] 2025-12-16 18:56:24,768 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 19:57:01] 2025-12-16 18:56:24,768 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 19:57:01] 2025-12-16 18:56:24,768 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 19:57:01] 2025-12-16 18:56:24,768 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 19:57:01] 2025-12-16 18:56:24,768 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 19:57:01] 2025-12-16 18:56:24,768 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 19:57:01] 2025-12-16 18:56:24,768 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 19:57:01] 2025-12-16 18:56:24,768 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 19:57:01] 2025-12-16 18:56:24,769 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 19:57:01] 2025-12-16 18:56:24,769 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 19:57:01] 2025-12-16 18:56:24,769 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 19:57:01] 2025-12-16 18:56:24,769 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 19:57:01] 2025-12-16 18:56:24,769 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 19:57:01] 2025-12-16 18:56:24,769 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 19:57:01] 2025-12-16 18:56:24,769 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 19:57:01] 2025-12-16 18:56:24,769 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 19:57:01] 2025-12-16 18:56:24,769 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 19:57:01] 2025-12-16 18:56:24,769 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 19:57:01] 2025-12-16 18:56:24,769 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 19:57:01] 2025-12-16 18:56:24,770 | INFO     | job 6930662143 has completed (purged errors)
[2025-12-16 19:57:01] 2025-12-16 18:56:24,770 | INFO     | overall cleanup function is called
[2025-12-16 19:57:01] 2025-12-16 18:56:25,781 | INFO     | --- collectZombieJob: --- 10, [28650]
[2025-12-16 19:57:01] 2025-12-16 18:56:25,781 | INFO     | zombie collector waiting for pid 28650
[2025-12-16 19:57:01] 2025-12-16 18:56:25,781 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 19:57:01] 2025-12-16 18:56:25,782 | INFO     | collected zombie processes
[2025-12-16 19:57:01] 2025-12-16 18:56:25,782 | INFO     | will attempt to kill all subprocesses of pid=28650
[2025-12-16 19:57:01] 2025-12-16 18:56:25,875 | INFO     | process IDs to be killed: [28650] (in reverse order)
[2025-12-16 19:57:01] 2025-12-16 18:56:26,880 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 19:57:01] 2025-12-16 18:56:26,880 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 19:57:01] 2025-12-16 18:56:26,897 | INFO     | did not find any defunct processes belonging to 28650
[2025-12-16 19:57:01] 2025-12-16 18:56:26,914 | INFO     | did not find any defunct processes belonging to 28650
[2025-12-16 19:57:01] 2025-12-16 18:56:26,914 | INFO     | ready for new job
[2025-12-16 19:57:01] 2025-12-16 18:56:26,914 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 19:57:01] 2025-12-16 18:56:26,916 | INFO     | ***************************************
[2025-12-16 19:57:01] 2025-12-16 18:56:26,916 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 19:57:01] 2025-12-16 18:56:26,916 | INFO     | ***************************************
[2025-12-16 19:57:01] 2025-12-16 18:56:26,916 | INFO     | 
[2025-12-16 19:57:01] 2025-12-16 18:56:26,917 | INFO     | pilot is running in a VM
[2025-12-16 19:57:01] 2025-12-16 18:56:26,917 | INFO     | architecture information:
[2025-12-16 19:57:01] 2025-12-16 18:56:26,935 | INFO     | executing command: cat /etc/os-release
[2025-12-16 19:57:01] 2025-12-16 18:56:27,170 | INFO     | cat /etc/os-release:
[2025-12-16 19:57:01] NAME="CentOS Linux"
[2025-12-16 19:57:01] VERSION="7 (Core)"
[2025-12-16 19:57:01] ID="centos"
[2025-12-16 19:57:01] ID_LIKE="rhel fedora"
[2025-12-16 19:57:01] VERSION_ID="7"
[2025-12-16 19:57:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 19:57:01] ANSI_COLOR="0;31"
[2025-12-16 19:57:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 19:57:01] HOME_URL="https://www.centos.org/"
[2025-12-16 19:57:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 19:57:01] 
[2025-12-16 19:57:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 19:57:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 19:57:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 19:57:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 19:57:01] 
[2025-12-16 19:57:01] 2025-12-16 18:56:27,171 | INFO     | ***************************************
[2025-12-16 19:57:01] 2025-12-16 18:56:27,674 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-12-16 19:57:01] 2025-12-16 18:56:27,902 | INFO     | sufficient remaining disk space (495961767936 B)
[2025-12-16 19:57:01] 2025-12-16 18:56:27,902 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 19:57:01] 2025-12-16 18:56:27,902 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 19:57:01] 2025-12-16 18:56:27,902 | INFO     | update_server=False
[2025-12-16 19:57:01] 2025-12-16 18:56:27,902 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 19:57:01] 2025-12-16 18:56:28,213 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-16 19:57:01] 2025-12-16 18:56:28,213 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-16 19:57:01] 2025-12-16 18:56:28,214 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 19:57:01] 2025-12-16 18:56:28,214 | INFO     | will abort loop
[2025-12-16 19:57:01] 2025-12-16 18:56:28,249 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 19:57:01] 2025-12-16 18:56:28,535 | INFO     | all data control threads have been joined
[2025-12-16 19:57:01] 2025-12-16 18:56:28,576 | INFO     | all job control threads have been joined
[2025-12-16 19:57:01] 2025-12-16 18:56:28,835 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 19:57:01] 2025-12-16 18:56:28,908 | INFO     | [job] retrieve thread has finished
[2025-12-16 19:57:01] 2025-12-16 18:56:28,957 | INFO     | [job] validate thread has finished
[2025-12-16 19:57:01] 2025-12-16 18:56:29,039 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 19:57:01] 2025-12-16 18:56:29,189 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 19:57:01] 2025-12-16 18:56:29,213 | INFO     | all payload control threads have been joined
[2025-12-16 19:57:01] 2025-12-16 18:56:29,219 | INFO     | [job] job monitor thread has finished
[2025-12-16 19:57:01] 2025-12-16 18:56:29,355 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 19:57:01] 2025-12-16 18:56:29,369 | INFO     | [payload] failed_post thread has finished
[2025-12-16 19:57:01] 2025-12-16 18:56:29,436 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 19:57:01] 2025-12-16 18:56:29,541 | INFO     | [data] control thread has finished
[2025-12-16 19:57:01] 2025-12-16 18:56:29,581 | INFO     | [job] control thread has finished
[2025-12-16 19:57:01] 2025-12-16 18:56:29,774 | INFO     | [data] copytool_in thread has finished
[2025-12-16 19:57:01] 2025-12-16 18:56:29,841 | INFO     | [job] queue monitor thread has finished
[2025-12-16 19:57:01] 2025-12-16 18:56:30,068 | INFO     | [payload] validate_post thread has finished
[2025-12-16 19:57:01] 2025-12-16 18:56:30,219 | INFO     | [payload] control thread has finished
[2025-12-16 19:57:01] 2025-12-16 18:56:30,256 | INFO     | [data] copytool_out thread has finished
[2025-12-16 19:57:01] 2025-12-16 18:56:30,261 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 19:57:01] 2025-12-16 18:56:33,444 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 19:57:01] 2025-12-16 18:56:45,556 | INFO     | [monitor] cgroup control has ended
[2025-12-16 19:57:01] 2025-12-16 18:56:47,558 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140449482454848)>', '<ExcThread(monitor, started 140448895059712)>']
[2025-12-16 19:57:01] 2025-12-16 18:56:52,584 | INFO     | all workflow threads have been joined
[2025-12-16 19:57:01] 2025-12-16 18:56:52,584 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 19:57:01] 2025-12-16 18:56:52,585 | INFO     | traces error code: 0
[2025-12-16 19:57:01] 2025-12-16 18:56:52,585 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 19:57:01] 2025-12-16 18:56:56,976 | INFO     | PID=22112 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 19:57:01] 2025-12-16 18:56:56,976 | INFO     | .. there are 9 such processes running
[2025-12-16 19:57:01] 2025-12-16 18:56:56,978 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 19:57:01] 2025-12-16 18:56:56,978 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 19:57:01] 2025-12-16 18:56:56,978 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 19:57:01] 2025-12-16 18:56:56,978 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 19:57:01] 2025-12-16 18:56:56,978 | INFO     | [monitor] control thread has ended
[2025-12-16 19:57:01] 2025-12-16 18:56:57,246 [wrapper] ==== pilot stdout END ====
[2025-12-16 19:57:01] 2025-12-16 18:56:57,289 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 19:57:01] 2025-12-16 18:56:57,335 [wrapper] pilotpid: 22112
[2025-12-16 19:57:01] 2025-12-16 18:56:57,377 [wrapper] Pilot exit status: 0
[2025-12-16 19:57:01] 2025-12-16 18:56:57,733 [wrapper] pandaids: 6930662143
[2025-12-16 19:57:01] 2025-12-16 18:56:58,700 [wrapper] cleanup supervisor_pilot  6516 22113
[2025-12-16 19:57:01] 2025-12-16 18:56:58,819 [wrapper] Test setup, not cleaning
[2025-12-16 19:57:01] 2025-12-16 18:56:58,872 [wrapper] apfmon messages muted
[2025-12-16 19:57:01] 2025-12-16 18:56:58,928 [wrapper] ==== wrapper stdout END ====
[2025-12-16 19:57:01] 2025-12-16 18:56:59,038 [wrapper] ==== wrapper stderr END ====
[2025-12-16 19:57:01]  *** Error codes and diagnostics ***
[2025-12-16 19:57:01]     "exeErrorCode": 0,
[2025-12-16 19:57:01]     "exeErrorDiag": "",
[2025-12-16 19:57:01]     "pilotErrorCode": 0,
[2025-12-16 19:57:01]     "pilotErrorDiag": "",
[2025-12-16 19:57:01]  *** Listing of results directory ***
[2025-12-16 19:57:01] total 347432
[2025-12-16 19:57:01] -rw-r--r--. 1 boinc boinc    579449 Dec 16 05:16 pilot3.tar.gz
[2025-12-16 19:57:01] -rwx------. 1 boinc boinc     36322 Dec 16 05:17 runpilot2-wrapper.sh
[2025-12-16 19:57:01] -rw-r--r--. 1 boinc boinc      5112 Dec 16 05:17 queuedata.json
[2025-12-16 19:57:01] -rw-r--r--. 1 boinc boinc       100 Dec 16 15:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 19:57:01] -rwxr-xr-x. 1 boinc boinc      7986 Dec 16 15:36 run_atlas
[2025-12-16 19:57:01] -rw-r--r--. 1 boinc boinc       105 Dec 16 15:36 job.xml
[2025-12-16 19:57:01] -rw-r--r--. 1 boinc boinc      6393 Dec 16 15:36 init_data.xml
[2025-12-16 19:57:01] -rw-r--r--. 2 boinc boinc 194206217 Dec 16 15:36 EVNT.47886829._000417.pool.root.1
[2025-12-16 19:57:01] -rw-r--r--. 2 boinc boinc     15847 Dec 16 15:36 start_atlas.sh
[2025-12-16 19:57:01] drwxrwx--x. 2 boinc boinc        68 Dec 16 15:36 shared
[2025-12-16 19:57:01] -rw-r--r--. 2 boinc boinc    592416 Dec 16 15:36 input.tar.gz
[2025-12-16 19:57:01] -rw-r--r--. 1 boinc boinc         0 Dec 16 15:36 boinc_lockfile
[2025-12-16 19:57:01] -rw-r--r--. 1 boinc boinc      2539 Dec 16 15:36 pandaJob.out
[2025-12-16 19:57:01] -rw-------. 1 boinc boinc    987355 Dec 16 15:40 agis_schedconf.cvmfs.json
[2025-12-16 19:57:01] drwx------. 5 boinc boinc      4096 Dec 16 15:40 pilot3
[2025-12-16 19:57:01] -rw-------. 1 boinc boinc 152601989 Dec 16 19:53 HITS.47886831._011516.pool.root.1
[2025-12-16 19:57:01] -rw-r--r--. 1 boinc boinc       531 Dec 16 19:53 boinc_task_state.xml
[2025-12-16 19:57:01] -rw-------. 1 boinc boinc      1017 Dec 16 19:54 memory_monitor_summary.json
[2025-12-16 19:57:01] -rw-------. 1 boinc boinc   1516240 Dec 16 19:54 agis_ddmendpoints.agis.ALL.json
[2025-12-16 19:57:01] -rw-------. 1 boinc boinc    471942 Dec 16 19:54 log.47886831._011516.job.log.tgz.1
[2025-12-16 19:57:01] -rw-------. 1 boinc boinc      7777 Dec 16 19:56 heartbeat.json
[2025-12-16 19:57:01] -rw-r--r--. 1 boinc boinc      8192 Dec 16 19:56 boinc_mmap_file
[2025-12-16 19:57:01] -rw-r--r--. 1 boinc boinc        28 Dec 16 19:56 wrapper_checkpoint.txt
[2025-12-16 19:57:01] -rw-------. 1 boinc boinc        95 Dec 16 19:56 pilot_heartbeat.json
[2025-12-16 19:57:01] -rw-------. 1 boinc boinc       820 Dec 16 19:56 pilotlog.txt
[2025-12-16 19:57:01] -rw-------. 1 boinc boinc   2062319 Dec 16 19:56 log.47886831._011516.job.log.1
[2025-12-16 19:57:01] -rw-------. 1 boinc boinc       357 Dec 16 19:57 output.list
[2025-12-16 19:57:01] -rw-r--r--. 1 boinc boinc       620 Dec 16 19:57 runtime_log
[2025-12-16 19:57:01] -rw-------. 1 boinc boinc   2549760 Dec 16 19:57 result.tar.gz
[2025-12-16 19:57:01] -rw-r--r--. 1 boinc boinc      8817 Dec 16 19:57 runtime_log.err
[2025-12-16 19:57:01] -rw-------. 1 boinc boinc       656 Dec 16 19:57 nYNKDmtfbp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7IZKDmWmFCEn.diag
[2025-12-16 19:57:01] -rw-r--r--. 1 boinc boinc     21038 Dec 16 19:57 stderr.txt
[2025-12-16 19:57:01] HITS file was successfully produced:
[2025-12-16 19:57:01] -rw-------. 1 boinc boinc 152601989 Dec 16 19:53 shared/HITS.pool.root.1
[2025-12-16 19:57:01]  *** Contents of shared directory: ***
[2025-12-16 19:57:01] total 341772
[2025-12-16 19:57:01] -rw-r--r--. 2 boinc boinc 194206217 Dec 16 15:36 ATLAS.root_0
[2025-12-16 19:57:01] -rw-r--r--. 2 boinc boinc     15847 Dec 16 15:36 start_atlas.sh
[2025-12-16 19:57:01] -rw-r--r--. 2 boinc boinc    592416 Dec 16 15:36 input.tar.gz
[2025-12-16 19:57:01] -rw-------. 1 boinc boinc 152601989 Dec 16 19:53 HITS.pool.root.1
[2025-12-16 19:57:01] -rw-------. 1 boinc boinc   2549760 Dec 16 19:57 result.tar.gz
19:57:03 (18302): run_atlas exited; CPU time 56548.362884
19:57:03 (18302): called boinc_finish(0)

</stderr_txt>
]]>

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