Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:56:36 (32699): wrapper (7.7.26015): starting
13:56:36 (32699): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 13:56:36] Arguments: --nthreads 8
[2025-12-16 13:56:36] Threads: 8
[2025-12-16 13:56:36] Checking for CVMFS
[2025-12-16 13:56:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 13:56:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 13:56:38] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 13:56:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 13:56:39] 2.11.2.0 20181 885 70632 154071 3 101 19290029 25165824 1088 130560 0 363137 98.988 1741924 2452 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-16 13:56:39] CVMFS is ok
[2025-12-16 13:56:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 13:56:39] Checking for apptainer binary...
[2025-12-16 13:56:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 13:56:39] Running /usr/bin/apptainer --version
[2025-12-16 13:56:39] apptainer version 1.3.2-1.el7
[2025-12-16 13:56:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 13:56:46] cg-vwn427.simple-grid.lan
[2025-12-16 13:56:46] apptainer works
[2025-12-16 13:56:46] Set ATHENA_PROC_NUMBER=8
[2025-12-16 13:56:46] Set ATHENA_CORE_NUMBER=8
[2025-12-16 13:56:46] Starting ATLAS job with PandaID=6929963124
[2025-12-16 13:56:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 19:09:59]  *** The last 200 lines of the pilot log: ***
[2025-12-16 19:09:59] 2025-12-16 18:08:48,502 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 19:09:59] 2025-12-16 18:08:48,503 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-16 19:09:59] 2025-12-16 18:08:48,505 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6929963124/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 19:09:59] 2025-12-16 18:08:48,506 | INFO     | extracted standard info from prmon json
[2025-12-16 19:09:59] 2025-12-16 18:08:48,506 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 19:09:59] 2025-12-16 18:08:48,506 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 19:09:59] 2025-12-16 18:08:48,506 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 19:09:59] 2025-12-16 18:08:48,506 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 19:09:59] 2025-12-16 18:08:48,513 | INFO     | fitting pss+swap vs Time
[2025-12-16 19:09:59] 2025-12-16 18:08:48,513 | INFO     | sum of square deviations: 7720081493.0
[2025-12-16 19:09:59] 2025-12-16 18:08:48,516 | INFO     | sum of deviations: 104313066287.00002
[2025-12-16 19:09:59] 2025-12-16 18:08:48,516 | INFO     | mean x: 1765899501.5
[2025-12-16 19:09:59] 2025-12-16 18:08:48,516 | INFO     | mean y: 2455759.835616438
[2025-12-16 19:09:59] 2025-12-16 18:08:48,517 | INFO     | intersect: -23858223939.358562
[2025-12-16 19:09:59] 2025-12-16 18:08:48,517 | INFO     | chi2: 6.543884441394228
[2025-12-16 19:09:59] 2025-12-16 18:08:48,518 | INFO     | sum of square deviations: 7330250928.0
[2025-12-16 19:09:59] 2025-12-16 18:08:48,520 | INFO     | sum of deviations: 122351670185.00002
[2025-12-16 19:09:59] 2025-12-16 18:08:48,521 | INFO     | mean x: 1765899349.0
[2025-12-16 19:09:59] 2025-12-16 18:08:48,521 | INFO     | mean y: 2462708.4843205577
[2025-12-16 19:09:59] 2025-12-16 18:08:48,521 | INFO     | intersect: -29472754013.4219
[2025-12-16 19:09:59] 2025-12-16 18:08:48,521 | INFO     | chi2: 5.774867702675997
[2025-12-16 19:09:59] 2025-12-16 18:08:48,522 | INFO     | current chi2=5.774867702675997 (change=11.751685800771657 %)
[2025-12-16 19:09:59] 2025-12-16 18:08:48,522 | INFO     | right removable region: 286
[2025-12-16 19:09:59] 2025-12-16 18:08:48,522 | INFO     | sum of square deviations: 7330250928.0
[2025-12-16 19:09:59] 2025-12-16 18:08:48,525 | INFO     | sum of deviations: 5421365056.999996
[2025-12-16 19:09:59] 2025-12-16 18:08:48,525 | INFO     | mean x: 1765899654.0
[2025-12-16 19:09:59] 2025-12-16 18:08:48,525 | INFO     | mean y: 2494416.881533101
[2025-12-16 19:09:59] 2025-12-16 18:08:48,525 | INFO     | intersect: -1303543639.987014
[2025-12-16 19:09:59] 2025-12-16 18:08:48,526 | INFO     | chi2: 2.095088147689265
[2025-12-16 19:09:59] 2025-12-16 18:08:48,526 | INFO     | current chi2=2.095088147689265 (change=67.984028959367 %)
[2025-12-16 19:09:59] 2025-12-16 18:08:48,526 | INFO     | sum of square deviations: 6953769450.5
[2025-12-16 19:09:59] 2025-12-16 18:08:48,529 | INFO     | sum of deviations: -40401398792.99999
[2025-12-16 19:09:59] 2025-12-16 18:08:48,529 | INFO     | mean x: 1765899806.5
[2025-12-16 19:09:59] 2025-12-16 18:08:48,529 | INFO     | mean y: 2512891.7021276597
[2025-12-16 19:09:59] 2025-12-16 18:08:48,530 | INFO     | intersect: 10262390332.096428
[2025-12-16 19:09:59] 2025-12-16 18:08:48,530 | INFO     | chi2: 0.959968588244202
[2025-12-16 19:09:59] 2025-12-16 18:08:48,530 | INFO     | current chi2=0.959968588244202 (change=54.180038233571224 %)
[2025-12-16 19:09:59] 2025-12-16 18:08:48,531 | INFO     | sum of square deviations: 6590404498.0
[2025-12-16 19:09:59] 2025-12-16 18:08:48,533 | INFO     | sum of deviations: -50708504071.99999
[2025-12-16 19:09:59] 2025-12-16 18:08:48,533 | INFO     | mean x: 1765899959.0
[2025-12-16 19:09:59] 2025-12-16 18:08:48,534 | INFO     | mean y: 2517217.2888086643
[2025-12-16 19:09:59] 2025-12-16 18:08:48,534 | INFO     | intersect: 13589869145.212326
[2025-12-16 19:09:59] 2025-12-16 18:08:48,534 | INFO     | chi2: 0.8982549453564146
[2025-12-16 19:09:59] 2025-12-16 18:08:48,534 | INFO     | current chi2=0.8982549453564146 (change=6.428714818748664 %)
[2025-12-16 19:09:59] 2025-12-16 18:08:48,534 | INFO     | left removable region: 30
[2025-12-16 19:09:59] 2025-12-16 18:08:48,535 | INFO     | sum of square deviations: 5202255680.0
[2025-12-16 19:09:59] 2025-12-16 18:08:48,537 | INFO     | sum of deviations: -22989990642.5
[2025-12-16 19:09:59] 2025-12-16 18:08:48,537 | INFO     | mean x: 1765900233.5
[2025-12-16 19:09:59] 2025-12-16 18:08:48,537 | INFO     | mean y: 2521973.79296875
[2025-12-16 19:09:59] 2025-12-16 18:08:48,538 | INFO     | intersect: 7806450181.288061
[2025-12-16 19:09:59] 2025-12-16 18:08:48,538 | INFO     | chi2: 0.06612762698260691
[2025-12-16 19:09:59] 2025-12-16 18:08:48,538 | INFO     | current memory leak: -4.42 B/s (using 256 data points, chi2=0.07)
[2025-12-16 19:09:59] 2025-12-16 18:08:48,539 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2025-12-16 19:09:59] 2025-12-16 18:08:48,539 | INFO     | ..............................
[2025-12-16 19:09:59] 2025-12-16 18:08:48,539 | INFO     | . Timing measurements:
[2025-12-16 19:09:59] 2025-12-16 18:08:48,539 | INFO     | . get job = 0 s
[2025-12-16 19:09:59] 2025-12-16 18:08:48,539 | INFO     | . initial setup = 11 s
[2025-12-16 19:09:59] 2025-12-16 18:08:48,539 | INFO     | . payload setup = 147 s
[2025-12-16 19:09:59] 2025-12-16 18:08:48,539 | INFO     | . stage-in = 0 s
[2025-12-16 19:09:59] 2025-12-16 18:08:48,539 | INFO     | . payload execution = 17978 s
[2025-12-16 19:09:59] 2025-12-16 18:08:48,540 | INFO     | . stage-out = 3 s
[2025-12-16 19:09:59] 2025-12-16 18:08:48,540 | INFO     | . log creation = 1 s
[2025-12-16 19:09:59] 2025-12-16 18:08:48,540 | INFO     | ..............................
[2025-12-16 19:09:59] 2025-12-16 18:08:48,668 | INFO     | 
[2025-12-16 19:09:59] 2025-12-16 18:08:48,668 | INFO     | job summary report
[2025-12-16 19:09:59] 2025-12-16 18:08:48,669 | INFO     | --------------------------------------------------
[2025-12-16 19:09:59] 2025-12-16 18:08:48,669 | INFO     | PanDA job id: 6929963124
[2025-12-16 19:09:59] 2025-12-16 18:08:48,669 | INFO     | task id: 47898826
[2025-12-16 19:09:59] 2025-12-16 18:08:48,669 | INFO     | errors: (none)
[2025-12-16 19:09:59] 2025-12-16 18:08:48,669 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 19:09:59] 2025-12-16 18:08:48,669 | INFO     | pilot state: finished 
[2025-12-16 19:09:59] 2025-12-16 18:08:48,669 | INFO     | transexitcode: 0
[2025-12-16 19:09:59] 2025-12-16 18:08:48,669 | INFO     | exeerrorcode: 0
[2025-12-16 19:09:59] 2025-12-16 18:08:48,669 | INFO     | exeerrordiag: 
[2025-12-16 19:09:59] 2025-12-16 18:08:48,669 | INFO     | exitcode: 0
[2025-12-16 19:09:59] 2025-12-16 18:08:48,669 | INFO     | exitmsg: OK
[2025-12-16 19:09:59] 2025-12-16 18:08:48,669 | INFO     | cpuconsumptiontime: 79943 s
[2025-12-16 19:09:59] 2025-12-16 18:08:48,670 | INFO     | nevents: 400
[2025-12-16 19:09:59] 2025-12-16 18:08:48,670 | INFO     | neventsw: 0
[2025-12-16 19:09:59] 2025-12-16 18:08:48,670 | INFO     | pid: 10582
[2025-12-16 19:09:59] 2025-12-16 18:08:48,670 | INFO     | pgrp: 10582
[2025-12-16 19:09:59] 2025-12-16 18:08:48,670 | INFO     | corecount: 8
[2025-12-16 19:09:59] 2025-12-16 18:08:48,670 | INFO     | event service: False
[2025-12-16 19:09:59] 2025-12-16 18:08:48,670 | INFO     | sizes: {0: 2283793, 1: 2283992, 12: 2283992, 23: 2284020, 33: 2284048, 44: 2284104, 55: 2284260, 66: 2284288, 77: 2284316, 87: 2284372, 98: 2284400, 109: 2284708, 
[2025-12-16 19:09:59] 2025-12-16 18:08:48,670 | INFO     | --------------------------------------------------
[2025-12-16 19:09:59] 2025-12-16 18:08:48,670 | INFO     | 
[2025-12-16 19:09:59] 2025-12-16 18:08:48,670 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2025-12-16 19:09:59] 2025-12-16 18:08:48,992 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 19:09:59] 2025-12-16 18:08:48,992 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 19:09:59] 2025-12-16 18:08:48,992 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 19:09:59] 2025-12-16 18:08:48,993 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 19:09:59] 2025-12-16 18:08:48,993 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 19:09:59] 2025-12-16 18:08:48,993 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 19:09:59] 2025-12-16 18:08:48,993 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 19:09:59] 2025-12-16 18:08:48,993 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 19:09:59] 2025-12-16 18:08:48,993 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 19:09:59] 2025-12-16 18:08:48,993 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 19:09:59] 2025-12-16 18:08:48,993 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 19:09:59] 2025-12-16 18:08:48,993 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 19:09:59] 2025-12-16 18:08:48,993 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 19:09:59] 2025-12-16 18:08:48,993 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 19:09:59] 2025-12-16 18:08:48,994 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 19:09:59] 2025-12-16 18:08:48,994 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 19:09:59] 2025-12-16 18:08:48,994 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 19:09:59] 2025-12-16 18:08:48,994 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 19:09:59] 2025-12-16 18:08:48,994 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 19:09:59] 2025-12-16 18:08:48,994 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 19:09:59] 2025-12-16 18:08:48,994 | INFO     | job 6929963124 has completed (purged errors)
[2025-12-16 19:09:59] 2025-12-16 18:08:48,994 | INFO     | overall cleanup function is called
[2025-12-16 19:09:59] 2025-12-16 18:08:50,003 | INFO     | --- collectZombieJob: --- 10, [10582]
[2025-12-16 19:09:59] 2025-12-16 18:08:50,004 | INFO     | zombie collector waiting for pid 10582
[2025-12-16 19:09:59] 2025-12-16 18:08:50,004 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 19:09:59] 2025-12-16 18:08:50,004 | INFO     | collected zombie processes
[2025-12-16 19:09:59] 2025-12-16 18:08:50,004 | INFO     | will attempt to kill all subprocesses of pid=10582
[2025-12-16 19:09:59] 2025-12-16 18:08:50,130 | INFO     | process IDs to be killed: [10582] (in reverse order)
[2025-12-16 19:09:59] 2025-12-16 18:08:50,955 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 19:09:59] 2025-12-16 18:08:50,955 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 19:09:59] 2025-12-16 18:08:50,959 | INFO     | did not find any defunct processes belonging to 10582
[2025-12-16 19:09:59] 2025-12-16 18:08:50,962 | INFO     | did not find any defunct processes belonging to 10582
[2025-12-16 19:09:59] 2025-12-16 18:08:50,962 | INFO     | ready for new job
[2025-12-16 19:09:59] 2025-12-16 18:08:50,963 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 19:09:59] 2025-12-16 18:08:50,970 | INFO     | ***************************************
[2025-12-16 19:09:59] 2025-12-16 18:08:50,971 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 19:09:59] 2025-12-16 18:08:50,971 | INFO     | ***************************************
[2025-12-16 19:09:59] 2025-12-16 18:08:50,971 | INFO     | 
[2025-12-16 19:09:59] 2025-12-16 18:08:50,971 | INFO     | pilot is running in a VM
[2025-12-16 19:09:59] 2025-12-16 18:08:50,971 | INFO     | architecture information:
[2025-12-16 19:09:59] 2025-12-16 18:08:50,978 | INFO     | executing command: cat /etc/os-release
[2025-12-16 19:09:59] 2025-12-16 18:08:51,171 | INFO     | cat /etc/os-release:
[2025-12-16 19:09:59] NAME="CentOS Linux"
[2025-12-16 19:09:59] VERSION="7 (Core)"
[2025-12-16 19:09:59] ID="centos"
[2025-12-16 19:09:59] ID_LIKE="rhel fedora"
[2025-12-16 19:09:59] VERSION_ID="7"
[2025-12-16 19:09:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 19:09:59] ANSI_COLOR="0;31"
[2025-12-16 19:09:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 19:09:59] HOME_URL="https://www.centos.org/"
[2025-12-16 19:09:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 19:09:59] 
[2025-12-16 19:09:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 19:09:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 19:09:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 19:09:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 19:09:59] 
[2025-12-16 19:09:59] 2025-12-16 18:08:51,171 | INFO     | ***************************************
[2025-12-16 19:09:59] 2025-12-16 18:08:51,675 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2025-12-16 19:09:59] 2025-12-16 18:08:51,770 | INFO     | sufficient remaining disk space (495987982336 B)
[2025-12-16 19:09:59] 2025-12-16 18:08:51,770 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 19:09:59] 2025-12-16 18:08:51,771 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 19:09:59] 2025-12-16 18:08:51,771 | INFO     | update_server=False
[2025-12-16 19:09:59] 2025-12-16 18:08:51,771 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 19:09:59] 2025-12-16 18:08:51,771 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 19:09:59] 2025-12-16 18:08:51,820 | INFO     | all data control threads have been joined
[2025-12-16 19:09:59] 2025-12-16 18:08:51,911 | INFO     | all job control threads have been joined
[2025-12-16 19:09:59] 2025-12-16 18:08:52,380 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 19:09:59] 2025-12-16 18:08:52,381 | INFO     | aborting loop
[2025-12-16 19:09:59] 2025-12-16 18:08:52,777 | INFO     | [job] retrieve thread has finished
[2025-12-16 19:09:59] 2025-12-16 18:08:52,827 | INFO     | [data] control thread has finished
[2025-12-16 19:09:59] 2025-12-16 18:08:52,918 | INFO     | [job] control thread has finished
[2025-12-16 19:09:59] 2025-12-16 18:08:53,226 | INFO     | all payload control threads have been joined
[2025-12-16 19:09:59] 2025-12-16 18:08:53,258 | INFO     | [job] validate thread has finished
[2025-12-16 19:09:59] 2025-12-16 18:08:53,387 | INFO     | [job] job monitor thread has finished
[2025-12-16 19:09:59] 2025-12-16 18:08:53,412 | INFO     | [data] copytool_in thread has finished
[2025-12-16 19:09:59] 2025-12-16 18:08:53,584 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 19:09:59] 2025-12-16 18:08:53,688 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 19:09:59] 2025-12-16 18:08:53,761 | INFO     | [payload] validate_post thread has finished
[2025-12-16 19:09:59] 2025-12-16 18:08:53,779 | INFO     | [data] copytool_out thread has finished
[2025-12-16 19:09:59] 2025-12-16 18:08:53,933 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 19:09:59] 2025-12-16 18:08:54,026 | INFO     | [payload] failed_post thread has finished
[2025-12-16 19:09:59] 2025-12-16 18:08:54,103 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 19:09:59] 2025-12-16 18:08:54,233 | INFO     | [payload] control thread has finished
[2025-12-16 19:09:59] 2025-12-16 18:08:54,694 | INFO     | [job] queue monitor thread has finished
[2025-12-16 19:09:59] 2025-12-16 18:08:54,956 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 19:09:59] 2025-12-16 18:08:58,966 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 19:09:59] 2025-12-16 18:09:02,097 | INFO     | job.realtimelogging is not enabled
[2025-12-16 19:09:59] 2025-12-16 18:09:03,104 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 19:09:59] 2025-12-16 18:09:21,600 | INFO     | PID=4066 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-16 19:09:59] 2025-12-16 18:09:21,600 | INFO     | .. there are 9 such processes running
[2025-12-16 19:09:59] 2025-12-16 18:09:21,600 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 19:09:59] 2025-12-16 18:09:21,600 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 19:09:59] 2025-12-16 18:09:21,600 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 19:09:59] 2025-12-16 18:09:49,360 | INFO     | [monitor] cgroup control has ended
[2025-12-16 19:09:59] 2025-12-16 18:09:50,683 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139650226591552)>', '<ExcThread(monitor, started 139649653667584)>']
[2025-12-16 19:09:59] 2025-12-16 18:09:50,773 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 19:09:59] 2025-12-16 18:09:50,774 | INFO     | [monitor] control thread has ended
[2025-12-16 19:09:59] 2025-12-16 18:09:55,709 | INFO     | all workflow threads have been joined
[2025-12-16 19:09:59] 2025-12-16 18:09:55,710 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 19:09:59] 2025-12-16 18:09:55,710 | INFO     | traces error code: 0
[2025-12-16 19:09:59] 2025-12-16 18:09:55,710 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 19:09:59] 2025-12-16 18:09:55,909 [wrapper] ==== pilot stdout END ====
[2025-12-16 19:09:59] 2025-12-16 18:09:56,043 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 19:09:59] 2025-12-16 18:09:56,211 [wrapper] pilotpid: 4066
[2025-12-16 19:09:59] 2025-12-16 18:09:56,311 [wrapper] Pilot exit status: 0
[2025-12-16 19:09:59] 2025-12-16 18:09:56,792 [wrapper] pandaids: 6929963124
[2025-12-16 19:09:59] 2025-12-16 18:09:57,825 [wrapper] cleanup supervisor_pilot 14204 4067
[2025-12-16 19:09:59] 2025-12-16 18:09:57,915 [wrapper] Test setup, not cleaning
[2025-12-16 19:09:59] 2025-12-16 18:09:57,947 [wrapper] apfmon messages muted
[2025-12-16 19:09:59] 2025-12-16 18:09:58,005 [wrapper] ==== wrapper stdout END ====
[2025-12-16 19:09:59] 2025-12-16 18:09:58,109 [wrapper] ==== wrapper stderr END ====
[2025-12-16 19:09:59]  *** Error codes and diagnostics ***
[2025-12-16 19:09:59]     "exeErrorCode": 0,
[2025-12-16 19:09:59]     "exeErrorDiag": "",
[2025-12-16 19:09:59]     "pilotErrorCode": 0,
[2025-12-16 19:09:59]     "pilotErrorDiag": "",
[2025-12-16 19:09:59]  *** Listing of results directory ***
[2025-12-16 19:09:59] total 439168
[2025-12-16 19:09:59] -rw-r--r--. 1 boinc boinc    579449 Dec 15 21:57 pilot3.tar.gz
[2025-12-16 19:09:59] -rwx------. 1 boinc boinc     36322 Dec 15 22:01 runpilot2-wrapper.sh
[2025-12-16 19:09:59] -rw-r--r--. 1 boinc boinc      5112 Dec 15 22:03 queuedata.json
[2025-12-16 19:09:59] -rw-r--r--. 1 boinc boinc       100 Dec 16 13:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 19:09:59] -rwxr-xr-x. 1 boinc boinc      7986 Dec 16 13:56 run_atlas
[2025-12-16 19:09:59] -rw-r--r--. 1 boinc boinc       105 Dec 16 13:56 job.xml
[2025-12-16 19:09:59] -rw-r--r--. 1 boinc boinc      6392 Dec 16 13:56 init_data.xml
[2025-12-16 19:09:59] -rw-r--r--. 2 boinc boinc 222285340 Dec 16 13:56 EVNT.47898824._000186.pool.root.1
[2025-12-16 19:09:59] -rw-r--r--. 2 boinc boinc     15847 Dec 16 13:56 start_atlas.sh
[2025-12-16 19:09:59] drwxrwx--x. 2 boinc boinc        68 Dec 16 13:56 shared
[2025-12-16 19:09:59] -rw-r--r--. 2 boinc boinc    592389 Dec 16 13:56 input.tar.gz
[2025-12-16 19:09:59] -rw-r--r--. 1 boinc boinc         0 Dec 16 13:56 boinc_lockfile
[2025-12-16 19:09:59] -rw-r--r--. 1 boinc boinc      2515 Dec 16 13:56 pandaJob.out
[2025-12-16 19:09:59] -rw-------. 1 boinc boinc    990993 Dec 16 14:01 agis_schedconf.cvmfs.json
[2025-12-16 19:09:59] drwx------. 5 boinc boinc      4096 Dec 16 14:01 pilot3
[2025-12-16 19:09:59] -rw-------. 1 boinc boinc 217585269 Dec 16 19:05 HITS.47898826._003186.pool.root.1
[2025-12-16 19:09:59] -rw-r--r--. 1 boinc boinc       531 Dec 16 19:06 boinc_task_state.xml
[2025-12-16 19:09:59] -rw-------. 1 boinc boinc      1018 Dec 16 19:07 memory_monitor_summary.json
[2025-12-16 19:09:59] -rw-------. 1 boinc boinc   1516240 Dec 16 19:07 agis_ddmendpoints.agis.ALL.json
[2025-12-16 19:09:59] -rw-------. 1 boinc boinc    508117 Dec 16 19:07 log.47898826._003186.job.log.tgz.1
[2025-12-16 19:09:59] -rw-------. 1 boinc boinc        95 Dec 16 19:08 pilot_heartbeat.json
[2025-12-16 19:09:59] -rw-------. 1 boinc boinc      7783 Dec 16 19:08 heartbeat.json
[2025-12-16 19:09:59] -rw-r--r--. 1 boinc boinc      8192 Dec 16 19:09 boinc_mmap_file
[2025-12-16 19:09:59] -rw-r--r--. 1 boinc boinc        28 Dec 16 19:09 wrapper_checkpoint.txt
[2025-12-16 19:09:59] -rw-------. 1 boinc boinc      4956 Dec 16 19:09 pilotlog.txt
[2025-12-16 19:09:59] -rw-------. 1 boinc boinc   2461020 Dec 16 19:09 log.47898826._003186.job.log.1
[2025-12-16 19:09:59] -rw-------. 1 boinc boinc       357 Dec 16 19:09 output.list
[2025-12-16 19:09:59] -rw-r--r--. 1 boinc boinc       620 Dec 16 19:09 runtime_log
[2025-12-16 19:09:59] -rw-------. 1 boinc boinc   2990080 Dec 16 19:09 result.tar.gz
[2025-12-16 19:09:59] -rw-r--r--. 1 boinc boinc      8833 Dec 16 19:09 runtime_log.err
[2025-12-16 19:09:59] -rw-------. 1 boinc boinc       657 Dec 16 19:09 26UMDmsrUp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqqYKDmudqTbn.diag
[2025-12-16 19:09:59] -rw-r--r--. 1 boinc boinc     20744 Dec 16 19:09 stderr.txt
[2025-12-16 19:09:59] HITS file was successfully produced:
[2025-12-16 19:09:59] -rw-------. 1 boinc boinc 217585269 Dec 16 19:05 shared/HITS.pool.root.1
[2025-12-16 19:09:59]  *** Contents of shared directory: ***
[2025-12-16 19:09:59] total 433080
[2025-12-16 19:09:59] -rw-r--r--. 2 boinc boinc 222285340 Dec 16 13:56 ATLAS.root_0
[2025-12-16 19:09:59] -rw-r--r--. 2 boinc boinc     15847 Dec 16 13:56 start_atlas.sh
[2025-12-16 19:09:59] -rw-r--r--. 2 boinc boinc    592389 Dec 16 13:56 input.tar.gz
[2025-12-16 19:09:59] -rw-------. 1 boinc boinc 217585269 Dec 16 19:05 HITS.pool.root.1
[2025-12-16 19:09:59] -rw-------. 1 boinc boinc   2990080 Dec 16 19:09 result.tar.gz
19:10:00 (32699): run_atlas exited; CPU time 80161.019008
19:10:00 (32699): called boinc_finish(0)

</stderr_txt>
]]>

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