Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:23:54 (19280): wrapper (7.7.26015): starting
16:23:54 (19280): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 16:23:54] Arguments: --nthreads 8
[2025-12-16 16:23:54] Threads: 8
[2025-12-16 16:23:54] Checking for CVMFS
[2025-12-16 16:23:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 16:23:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 16:23:55] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 16:23:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 16:23:56] 2.11.2.0 24088 1031 68432 154075 0 61 24039449 25165824 4712 130560 0 819547 99.639 1528889 1252 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-16 16:23:56] CVMFS is ok
[2025-12-16 16:23:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 16:23:56] Checking for apptainer binary...
[2025-12-16 16:23:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 16:23:56] Running /usr/bin/apptainer --version
[2025-12-16 16:23:56] apptainer version 1.3.2-1.el7
[2025-12-16 16:23:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 16:24:20] cg-vwn483.simple-grid.lan
[2025-12-16 16:24:20] apptainer works
[2025-12-16 16:24:20] Set ATHENA_PROC_NUMBER=8
[2025-12-16 16:24:20] Set ATHENA_CORE_NUMBER=8
[2025-12-16 16:24:20] Starting ATLAS job with PandaID=6929805811
[2025-12-16 16:24:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/24 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 20:36:28]  *** The last 200 lines of the pilot log: ***
[2025-12-16 20:36:28] 2025-12-16 19:35:20,279 | INFO     | time since job start (14848s) is within the limit (174528.0s)
[2025-12-16 20:36:28] 2025-12-16 19:35:22,269 | INFO     | monitor loop #1074: job 0:6929805811 is in state 'finished'
[2025-12-16 20:36:28] 2025-12-16 19:35:22,269 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 20:36:28] 2025-12-16 19:35:22,286 | INFO     | time since job start (14850s) is within the limit (174528.0s)
[2025-12-16 20:36:28] 2025-12-16 19:35:24,298 | INFO     | time since job start (14852s) is within the limit (174528.0s)
[2025-12-16 20:36:28] 2025-12-16 19:35:24,773 | INFO     | monitor loop #1075: job 0:6929805811 is in state 'finished'
[2025-12-16 20:36:28] 2025-12-16 19:35:24,773 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 20:36:28] 2025-12-16 19:35:25,779 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 20:36:28] 2025-12-16 19:35:25,780 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-12-16 20:36:28] 2025-12-16 19:35:25,782 | INFO     | using path: /var/lib/boinc/slots/24/PanDA_Pilot-6929805811/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 20:36:28] 2025-12-16 19:35:25,783 | INFO     | extracted standard info from prmon json
[2025-12-16 20:36:28] 2025-12-16 19:35:25,783 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 20:36:28] 2025-12-16 19:35:25,783 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 20:36:28] 2025-12-16 19:35:25,783 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 20:36:28] 2025-12-16 19:35:25,783 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 20:36:28] 2025-12-16 19:35:25,788 | INFO     | fitting pss+swap vs Time
[2025-12-16 20:36:28] 2025-12-16 19:35:25,789 | INFO     | sum of square deviations: 4024149870.0
[2025-12-16 20:36:28] 2025-12-16 19:35:25,791 | INFO     | sum of deviations: 54387674175.99999
[2025-12-16 20:36:28] 2025-12-16 19:35:25,791 | INFO     | mean x: 1765906455.0
[2025-12-16 20:36:28] 2025-12-16 19:35:25,791 | INFO     | mean y: 2430117.395744681
[2025-12-16 20:36:28] 2025-12-16 19:35:25,791 | INFO     | intersect: -23864361131.07115
[2025-12-16 20:36:28] 2025-12-16 19:35:25,791 | INFO     | chi2: 5.44183941219543
[2025-12-16 20:36:28] 2025-12-16 19:35:25,792 | INFO     | sum of square deviations: 3772712597.5
[2025-12-16 20:36:28] 2025-12-16 19:35:25,794 | INFO     | sum of deviations: 68553446115.50002
[2025-12-16 20:36:28] 2025-12-16 19:35:25,794 | INFO     | mean x: 1765906302.5
[2025-12-16 20:36:28] 2025-12-16 19:35:25,794 | INFO     | mean y: 2438547.8826086954
[2025-12-16 20:36:28] 2025-12-16 19:35:25,794 | INFO     | intersect: -32085604054.05737
[2025-12-16 20:36:28] 2025-12-16 19:35:25,794 | INFO     | chi2: 4.711648532511732
[2025-12-16 20:36:28] 2025-12-16 19:35:25,795 | INFO     | current chi2=4.711648532511732 (change=13.41808944320011 %)
[2025-12-16 20:36:28] 2025-12-16 19:35:25,795 | INFO     | right removable region: 229
[2025-12-16 20:36:28] 2025-12-16 19:35:25,795 | INFO     | sum of square deviations: 3772712597.5
[2025-12-16 20:36:28] 2025-12-16 19:35:25,804 | INFO     | sum of deviations: -21515177630.000004
[2025-12-16 20:36:28] 2025-12-16 19:35:25,804 | INFO     | mean x: 1765906607.5
[2025-12-16 20:36:28] 2025-12-16 19:35:25,804 | INFO     | mean y: 2476074.513043478
[2025-12-16 20:36:28] 2025-12-16 19:35:25,804 | INFO     | intersect: 10073159530.106749
[2025-12-16 20:36:28] 2025-12-16 19:35:25,805 | INFO     | chi2: 1.2555374064687448
[2025-12-16 20:36:28] 2025-12-16 19:35:25,805 | INFO     | current chi2=1.2555374064687448 (change=76.92806951166136 %)
[2025-12-16 20:36:28] 2025-12-16 19:35:25,805 | INFO     | sum of square deviations: 3531973200.0
[2025-12-16 20:36:28] 2025-12-16 19:35:25,807 | INFO     | sum of deviations: -36231544810.99999
[2025-12-16 20:36:28] 2025-12-16 19:35:25,807 | INFO     | mean x: 1765906760.0
[2025-12-16 20:36:28] 2025-12-16 19:35:25,807 | INFO     | mean y: 2485293.3066666666
[2025-12-16 20:36:28] 2025-12-16 19:35:25,808 | INFO     | intersect: 18117438687.34369
[2025-12-16 20:36:28] 2025-12-16 19:35:25,808 | INFO     | chi2: 0.945543772279111
[2025-12-16 20:36:28] 2025-12-16 19:35:25,808 | INFO     | current chi2=0.945543772279111 (change=24.690115371512885 %)
[2025-12-16 20:36:28] 2025-12-16 19:35:25,808 | INFO     | left removable region: 20
[2025-12-16 20:36:28] 2025-12-16 19:35:25,809 | INFO     | sum of square deviations: 2830787960.0
[2025-12-16 20:36:28] 2025-12-16 19:35:25,810 | INFO     | sum of deviations: -11945308835.000002
[2025-12-16 20:36:28] 2025-12-16 19:35:25,810 | INFO     | mean x: 1765906882.0
[2025-12-16 20:36:28] 2025-12-16 19:35:25,811 | INFO     | mean y: 2489029.153110048
[2025-12-16 20:36:28] 2025-12-16 19:35:25,811 | INFO     | intersect: 7454231574.837071
[2025-12-16 20:36:28] 2025-12-16 19:35:25,811 | INFO     | chi2: 0.10961777835241898
[2025-12-16 20:36:28] 2025-12-16 19:35:25,811 | INFO     | current memory leak: -4.22 B/s (using 209 data points, chi2=0.11)
[2025-12-16 20:36:28] 2025-12-16 19:35:25,812 | INFO     | could have reported an average CPU frequency of 2249 MHz (11 samples)
[2025-12-16 20:36:28] 2025-12-16 19:35:25,812 | INFO     | ..............................
[2025-12-16 20:36:28] 2025-12-16 19:35:25,812 | INFO     | . Timing measurements:
[2025-12-16 20:36:28] 2025-12-16 19:35:25,812 | INFO     | . get job = 0 s
[2025-12-16 20:36:28] 2025-12-16 19:35:25,812 | INFO     | . initial setup = 4 s
[2025-12-16 20:36:28] 2025-12-16 19:35:25,813 | INFO     | . payload setup = 117 s
[2025-12-16 20:36:28] 2025-12-16 19:35:25,813 | INFO     | . stage-in = 0 s
[2025-12-16 20:36:28] 2025-12-16 19:35:25,813 | INFO     | . payload execution = 14463 s
[2025-12-16 20:36:28] 2025-12-16 19:35:25,813 | INFO     | . stage-out = 3 s
[2025-12-16 20:36:28] 2025-12-16 19:35:25,813 | INFO     | . log creation = 1 s
[2025-12-16 20:36:28] 2025-12-16 19:35:25,813 | INFO     | ..............................
[2025-12-16 20:36:28] 2025-12-16 19:35:25,942 | INFO     | 
[2025-12-16 20:36:28] 2025-12-16 19:35:25,942 | INFO     | job summary report
[2025-12-16 20:36:28] 2025-12-16 19:35:25,942 | INFO     | --------------------------------------------------
[2025-12-16 20:36:28] 2025-12-16 19:35:25,942 | INFO     | PanDA job id: 6929805811
[2025-12-16 20:36:28] 2025-12-16 19:35:25,942 | INFO     | task id: 47886933
[2025-12-16 20:36:28] 2025-12-16 19:35:25,942 | INFO     | errors: (none)
[2025-12-16 20:36:28] 2025-12-16 19:35:25,942 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 20:36:28] 2025-12-16 19:35:25,942 | INFO     | pilot state: finished 
[2025-12-16 20:36:28] 2025-12-16 19:35:25,943 | INFO     | transexitcode: 0
[2025-12-16 20:36:28] 2025-12-16 19:35:25,943 | INFO     | exeerrorcode: 0
[2025-12-16 20:36:28] 2025-12-16 19:35:25,943 | INFO     | exeerrordiag: 
[2025-12-16 20:36:28] 2025-12-16 19:35:25,943 | INFO     | exitcode: 0
[2025-12-16 20:36:28] 2025-12-16 19:35:25,943 | INFO     | exitmsg: OK
[2025-12-16 20:36:28] 2025-12-16 19:35:25,943 | INFO     | cpuconsumptiontime: 54767 s
[2025-12-16 20:36:28] 2025-12-16 19:35:25,943 | INFO     | nevents: 400
[2025-12-16 20:36:28] 2025-12-16 19:35:25,943 | INFO     | neventsw: 0
[2025-12-16 20:36:28] 2025-12-16 19:35:25,943 | INFO     | pid: 29591
[2025-12-16 20:36:28] 2025-12-16 19:35:25,944 | INFO     | pgrp: 29591
[2025-12-16 20:36:28] 2025-12-16 19:35:25,944 | INFO     | corecount: 8
[2025-12-16 20:36:28] 2025-12-16 19:35:25,944 | INFO     | event service: False
[2025-12-16 20:36:28] 2025-12-16 19:35:25,944 | INFO     | sizes: {0: 2283740, 1: 2283995, 2: 2284023, 12: 2284023, 23: 2284051, 34: 2284079, 45: 2284235, 55: 2284263, 66: 2284291, 77: 2284319, 83: 2284637, 87: 2284973, 14
[2025-12-16 20:36:28] 2025-12-16 19:35:25,944 | INFO     | --------------------------------------------------
[2025-12-16 20:36:28] 2025-12-16 19:35:25,944 | INFO     | 
[2025-12-16 20:36:28] 2025-12-16 19:35:25,944 | INFO     | executing command: ls -lF /var/lib/boinc/slots/24
[2025-12-16 20:36:28] 2025-12-16 19:35:26,305 | INFO     | time since job start (14854s) is within the limit (174528.0s)
[2025-12-16 20:36:28] 2025-12-16 19:35:26,365 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 20:36:28] 2025-12-16 19:35:26,365 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 20:36:28] 2025-12-16 19:35:26,366 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 20:36:28] 2025-12-16 19:35:26,366 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 20:36:28] 2025-12-16 19:35:26,366 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 20:36:28] 2025-12-16 19:35:26,366 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 20:36:28] 2025-12-16 19:35:26,366 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 20:36:28] 2025-12-16 19:35:26,366 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 20:36:28] 2025-12-16 19:35:26,366 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 20:36:28] 2025-12-16 19:35:26,366 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 20:36:28] 2025-12-16 19:35:26,366 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 20:36:28] 2025-12-16 19:35:26,367 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 20:36:28] 2025-12-16 19:35:26,367 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 20:36:28] 2025-12-16 19:35:26,367 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 20:36:28] 2025-12-16 19:35:26,367 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 20:36:28] 2025-12-16 19:35:26,367 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 20:36:28] 2025-12-16 19:35:26,367 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 20:36:28] 2025-12-16 19:35:26,367 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 20:36:28] 2025-12-16 19:35:26,367 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 20:36:28] 2025-12-16 19:35:26,367 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 20:36:28] 2025-12-16 19:35:26,367 | INFO     | job 6929805811 has completed (purged errors)
[2025-12-16 20:36:28] 2025-12-16 19:35:26,368 | INFO     | overall cleanup function is called
[2025-12-16 20:36:28] 2025-12-16 19:35:27,376 | INFO     | --- collectZombieJob: --- 10, [29591]
[2025-12-16 20:36:28] 2025-12-16 19:35:27,376 | INFO     | zombie collector waiting for pid 29591
[2025-12-16 20:36:28] 2025-12-16 19:35:27,376 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 20:36:28] 2025-12-16 19:35:27,376 | INFO     | collected zombie processes
[2025-12-16 20:36:28] 2025-12-16 19:35:27,376 | INFO     | will attempt to kill all subprocesses of pid=29591
[2025-12-16 20:36:28] 2025-12-16 19:35:27,479 | INFO     | process IDs to be killed: [29591] (in reverse order)
[2025-12-16 20:36:28] 2025-12-16 19:35:27,992 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 20:36:28] 2025-12-16 19:35:27,993 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 20:36:28] 2025-12-16 19:35:27,996 | INFO     | did not find any defunct processes belonging to 29591
[2025-12-16 20:36:28] 2025-12-16 19:35:27,999 | INFO     | did not find any defunct processes belonging to 29591
[2025-12-16 20:36:28] 2025-12-16 19:35:27,999 | INFO     | ready for new job
[2025-12-16 20:36:28] 2025-12-16 19:35:27,999 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 20:36:28] 2025-12-16 19:35:28,001 | INFO     | ***************************************
[2025-12-16 20:36:28] 2025-12-16 19:35:28,001 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 20:36:28] 2025-12-16 19:35:28,001 | INFO     | ***************************************
[2025-12-16 20:36:28] 2025-12-16 19:35:28,001 | INFO     | 
[2025-12-16 20:36:28] 2025-12-16 19:35:28,002 | INFO     | pilot is running in a VM
[2025-12-16 20:36:28] 2025-12-16 19:35:28,002 | INFO     | architecture information:
[2025-12-16 20:36:28] 2025-12-16 19:35:28,009 | INFO     | executing command: cat /etc/os-release
[2025-12-16 20:36:28] 2025-12-16 19:35:28,147 | INFO     | cat /etc/os-release:
[2025-12-16 20:36:28] NAME="CentOS Linux"
[2025-12-16 20:36:28] VERSION="7 (Core)"
[2025-12-16 20:36:28] ID="centos"
[2025-12-16 20:36:28] ID_LIKE="rhel fedora"
[2025-12-16 20:36:28] VERSION_ID="7"
[2025-12-16 20:36:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 20:36:28] ANSI_COLOR="0;31"
[2025-12-16 20:36:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 20:36:28] HOME_URL="https://www.centos.org/"
[2025-12-16 20:36:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 20:36:28] 
[2025-12-16 20:36:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 20:36:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 20:36:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 20:36:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 20:36:28] 
[2025-12-16 20:36:28] 2025-12-16 19:35:28,147 | INFO     | ***************************************
[2025-12-16 20:36:28] 2025-12-16 19:35:28,651 | INFO     | executing command: df -mP /var/lib/boinc/slots/24
[2025-12-16 20:36:28] 2025-12-16 19:35:28,909 | INFO     | sufficient remaining disk space (495977496576 B)
[2025-12-16 20:36:28] 2025-12-16 19:35:28,910 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 20:36:28] 2025-12-16 19:35:28,910 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 20:36:28] 2025-12-16 19:35:28,910 | INFO     | update_server=False
[2025-12-16 20:36:28] 2025-12-16 19:35:28,910 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 20:36:28] 2025-12-16 19:35:28,910 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 20:36:28] 2025-12-16 19:35:28,910 | INFO     | aborting loop
[2025-12-16 20:36:28] 2025-12-16 19:35:28,913 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 20:36:28] 2025-12-16 19:35:29,405 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 20:36:28] 2025-12-16 19:35:29,559 | INFO     | all data control threads have been joined
[2025-12-16 20:36:28] 2025-12-16 19:35:29,916 | INFO     | [job] retrieve thread has finished
[2025-12-16 20:36:28] 2025-12-16 19:35:29,916 | INFO     | [job] job monitor thread has finished
[2025-12-16 20:36:28] 2025-12-16 19:35:30,124 | INFO     | all payload control threads have been joined
[2025-12-16 20:36:28] 2025-12-16 19:35:30,130 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 20:36:28] 2025-12-16 19:35:30,325 | INFO     | [job] validate thread has finished
[2025-12-16 20:36:28] 2025-12-16 19:35:30,435 | INFO     | [payload] validate_post thread has finished
[2025-12-16 20:36:28] 2025-12-16 19:35:30,502 | INFO     | all job control threads have been joined
[2025-12-16 20:36:28] 2025-12-16 19:35:30,564 | INFO     | [data] control thread has finished
[2025-12-16 20:36:28] 2025-12-16 19:35:30,596 | INFO     | [payload] failed_post thread has finished
[2025-12-16 20:36:28] 2025-12-16 19:35:30,632 | INFO     | [data] copytool_in thread has finished
[2025-12-16 20:36:28] 2025-12-16 19:35:30,962 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 20:36:28] 2025-12-16 19:35:31,127 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 20:36:28] 2025-12-16 19:35:31,130 | INFO     | [payload] control thread has finished
[2025-12-16 20:36:28] 2025-12-16 19:35:31,296 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 20:36:28] 2025-12-16 19:35:31,409 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 20:36:28] 2025-12-16 19:35:31,413 | INFO     | [data] copytool_out thread has finished
[2025-12-16 20:36:28] 2025-12-16 19:35:31,508 | INFO     | [job] control thread has finished
[2025-12-16 20:36:28] 2025-12-16 19:35:31,968 | INFO     | [job] queue monitor thread has finished
[2025-12-16 20:36:28] 2025-12-16 19:35:32,922 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 20:36:28] 2025-12-16 19:35:59,483 | INFO     | PID=23069 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 20:36:28] 2025-12-16 19:35:59,483 | INFO     | .. there are 9 such processes running
[2025-12-16 20:36:28] 2025-12-16 19:35:59,485 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 20:36:28] 2025-12-16 19:35:59,485 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 20:36:28] 2025-12-16 19:35:59,485 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 20:36:28] 2025-12-16 19:36:17,324 | INFO     | [monitor] cgroup control has ended
[2025-12-16 20:36:28] 2025-12-16 19:36:19,326 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139794726737728)>', '<ExcThread(monitor, started 139794424239872)>']
[2025-12-16 20:36:28] 2025-12-16 19:36:19,604 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 20:36:28] 2025-12-16 19:36:19,604 | INFO     | [monitor] control thread has ended
[2025-12-16 20:36:28] 2025-12-16 19:36:24,352 | INFO     | all workflow threads have been joined
[2025-12-16 20:36:28] 2025-12-16 19:36:24,352 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 20:36:28] 2025-12-16 19:36:24,352 | INFO     | traces error code: 0
[2025-12-16 20:36:28] 2025-12-16 19:36:24,353 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 20:36:28] 2025-12-16 19:36:24,665 [wrapper] ==== pilot stdout END ====
[2025-12-16 20:36:28] 2025-12-16 19:36:24,756 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 20:36:28] 2025-12-16 19:36:24,851 [wrapper] pilotpid: 23069
[2025-12-16 20:36:28] 2025-12-16 19:36:24,970 [wrapper] Pilot exit status: 0
[2025-12-16 20:36:28] 2025-12-16 19:36:25,450 [wrapper] pandaids: 6929805811
[2025-12-16 20:36:28] 2025-12-16 19:36:26,292 [wrapper] cleanup supervisor_pilot 23901 23070
[2025-12-16 20:36:28] 2025-12-16 19:36:26,352 [wrapper] Test setup, not cleaning
[2025-12-16 20:36:28] 2025-12-16 19:36:26,468 [wrapper] apfmon messages muted
[2025-12-16 20:36:28] 2025-12-16 19:36:26,523 [wrapper] ==== wrapper stdout END ====
[2025-12-16 20:36:28] 2025-12-16 19:36:26,578 [wrapper] ==== wrapper stderr END ====
[2025-12-16 20:36:28]  *** Error codes and diagnostics ***
[2025-12-16 20:36:28]     "exeErrorCode": 0,
[2025-12-16 20:36:28]     "exeErrorDiag": "",
[2025-12-16 20:36:28]     "pilotErrorCode": 0,
[2025-12-16 20:36:28]     "pilotErrorDiag": "",
[2025-12-16 20:36:28]  *** Listing of results directory ***
[2025-12-16 20:36:28] total 335100
[2025-12-16 20:36:28] -rwx------. 1 boinc boinc     36322 Dec 15 16:55 runpilot2-wrapper.sh
[2025-12-16 20:36:28] -rw-r--r--. 1 boinc boinc      5112 Dec 15 16:57 queuedata.json
[2025-12-16 20:36:28] -rw-r--r--. 1 boinc boinc    579449 Dec 15 16:57 pilot3.tar.gz
[2025-12-16 20:36:28] -rw-r--r--. 1 boinc boinc       100 Dec 16 16:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 20:36:28] -rwxr-xr-x. 1 boinc boinc      7986 Dec 16 16:23 run_atlas
[2025-12-16 20:36:28] -rw-r--r--. 1 boinc boinc       105 Dec 16 16:23 job.xml
[2025-12-16 20:36:28] -rw-r--r--. 1 boinc boinc      6393 Dec 16 16:23 init_data.xml
[2025-12-16 20:36:28] -rw-r--r--. 2 boinc boinc 191221336 Dec 16 16:23 EVNT.47886929._000187.pool.root.1
[2025-12-16 20:36:28] -rw-r--r--. 2 boinc boinc     15847 Dec 16 16:23 start_atlas.sh
[2025-12-16 20:36:28] drwxrwx--x. 2 boinc boinc        68 Dec 16 16:23 shared
[2025-12-16 20:36:28] -rw-r--r--. 2 boinc boinc    592399 Dec 16 16:23 input.tar.gz
[2025-12-16 20:36:28] -rw-r--r--. 1 boinc boinc         0 Dec 16 16:23 boinc_lockfile
[2025-12-16 20:36:28] -rw-r--r--. 1 boinc boinc      2514 Dec 16 16:24 pandaJob.out
[2025-12-16 20:36:28] -rw-------. 1 boinc boinc    987386 Dec 16 16:27 agis_schedconf.cvmfs.json
[2025-12-16 20:36:28] drwx------. 5 boinc boinc      4096 Dec 16 16:27 pilot3
[2025-12-16 20:36:28] -rw-------. 1 boinc boinc 143124608 Dec 16 20:32 HITS.47886933._005376.pool.root.1
[2025-12-16 20:36:28] -rw-r--r--. 1 boinc boinc       531 Dec 16 20:32 boinc_task_state.xml
[2025-12-16 20:36:28] -rw-------. 1 boinc boinc      1016 Dec 16 20:33 memory_monitor_summary.json
[2025-12-16 20:36:28] -rw-------. 1 boinc boinc   1516240 Dec 16 20:33 agis_ddmendpoints.agis.ALL.json
[2025-12-16 20:36:28] -rw-------. 1 boinc boinc    466769 Dec 16 20:33 log.47886933._005376.job.log.tgz.1
[2025-12-16 20:36:28] -rw-------. 1 boinc boinc      7776 Dec 16 20:35 heartbeat.json
[2025-12-16 20:36:28] -rw-------. 1 boinc boinc        95 Dec 16 20:35 pilot_heartbeat.json
[2025-12-16 20:36:28] -rw-r--r--. 1 boinc boinc      8192 Dec 16 20:36 boinc_mmap_file
[2025-12-16 20:36:28] -rw-r--r--. 1 boinc boinc        28 Dec 16 20:36 wrapper_checkpoint.txt
[2025-12-16 20:36:28] -rw-------. 1 boinc boinc      4885 Dec 16 20:36 pilotlog.txt
[2025-12-16 20:36:28] -rw-------. 1 boinc boinc   1985696 Dec 16 20:36 log.47886933._005376.job.log.1
[2025-12-16 20:36:28] -rw-------. 1 boinc boinc       357 Dec 16 20:36 output.list
[2025-12-16 20:36:28] -rw-r--r--. 1 boinc boinc       620 Dec 16 20:36 runtime_log
[2025-12-16 20:36:28] -rw-------. 1 boinc boinc   2467840 Dec 16 20:36 result.tar.gz
[2025-12-16 20:36:28] -rw-r--r--. 1 boinc boinc      8833 Dec 16 20:36 runtime_log.err
[2025-12-16 20:36:28] -rw-------. 1 boinc boinc       656 Dec 16 20:36 axnKDm65Pp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmwqTKDm1b453m.diag
[2025-12-16 20:36:28] -rw-r--r--. 1 boinc boinc     21004 Dec 16 20:36 stderr.txt
[2025-12-16 20:36:28] HITS file was successfully produced:
[2025-12-16 20:36:28] -rw-------. 1 boinc boinc 143124608 Dec 16 20:32 shared/HITS.pool.root.1
[2025-12-16 20:36:28]  *** Contents of shared directory: ***
[2025-12-16 20:36:28] total 329520
[2025-12-16 20:36:28] -rw-r--r--. 2 boinc boinc 191221336 Dec 16 16:23 ATLAS.root_0
[2025-12-16 20:36:28] -rw-r--r--. 2 boinc boinc     15847 Dec 16 16:23 start_atlas.sh
[2025-12-16 20:36:28] -rw-r--r--. 2 boinc boinc    592399 Dec 16 16:23 input.tar.gz
[2025-12-16 20:36:28] -rw-------. 1 boinc boinc 143124608 Dec 16 20:32 HITS.pool.root.1
[2025-12-16 20:36:28] -rw-------. 1 boinc boinc   2467840 Dec 16 20:36 result.tar.gz
20:36:30 (19280): run_atlas exited; CPU time 54967.514874
20:36:30 (19280): called boinc_finish(0)

</stderr_txt>
]]>

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