Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:57:02 (2183394): wrapper (7.7.26015): starting
21:57:02 (2183394): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 21:57:02] Arguments: --nthreads 4
[2025-12-16 21:57:02] Threads: 4
[2025-12-16 21:57:02] Checking for CVMFS
[2025-12-16 21:57:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 21:57:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 21:57:02] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 21:57:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 21:57:02] 2.9.2.0 382260 4932 93240 154087 2 57 25306169 36864000 0 130560 0 3865964 99.991 182511 18508 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-16 21:57:02] CVMFS is ok
[2025-12-16 21:57:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 21:57:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 21:57:02] Further information can be found at the LHC@home message board.
[2025-12-16 21:57:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 21:57:02] Checking for apptainer binary...
[2025-12-16 21:57:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 21:57:02] Running /usr/bin/apptainer --version
[2025-12-16 21:57:02] apptainer version 1.4.1-1.1
[2025-12-16 21:57:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 21:57:02] atlasA237
[2025-12-16 21:57:02] apptainer works
[2025-12-16 21:57:02] Set ATHENA_PROC_NUMBER=4
[2025-12-16 21:57:02] Set ATHENA_CORE_NUMBER=4
[2025-12-16 21:57:02] Starting ATLAS job with PandaID=6929807211
[2025-12-16 21:57:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 23:34:29]  *** The last 200 lines of the pilot log: ***
[2025-12-16 23:34:29] 2025-12-16 22:33:56,596 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 23:34:29] 2025-12-16 22:33:56,596 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 23:34:29] 2025-12-16 22:33:56,596 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 23:34:29] 2025-12-16 22:33:56,596 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 23:34:29] 2025-12-16 22:33:56,596 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 23:34:29] 2025-12-16 22:33:56,596 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 23:34:29] 2025-12-16 22:33:56,596 | INFO     | job 6929807211 has completed (purged errors)
[2025-12-16 23:34:29] 2025-12-16 22:33:56,597 | INFO     | overall cleanup function is called
[2025-12-16 23:34:29] 2025-12-16 22:33:57,603 | INFO     | --- collectZombieJob: --- 10, [2193793]
[2025-12-16 23:34:29] 2025-12-16 22:33:57,604 | INFO     | zombie collector waiting for pid 2193793
[2025-12-16 23:34:29] 2025-12-16 22:33:57,604 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 23:34:29] 2025-12-16 22:33:57,604 | INFO     | collected zombie processes
[2025-12-16 23:34:29] 2025-12-16 22:33:57,604 | INFO     | will attempt to kill all subprocesses of pid=2193793
[2025-12-16 23:34:29] 2025-12-16 22:33:57,666 | INFO     | process IDs to be killed: [2193793] (in reverse order)
[2025-12-16 23:34:29] 2025-12-16 22:33:57,703 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 23:34:29] 2025-12-16 22:33:57,703 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 23:34:29] 2025-12-16 22:33:57,706 | INFO     | did not find any defunct processes belonging to 2193793
[2025-12-16 23:34:29] 2025-12-16 22:33:57,708 | INFO     | did not find any defunct processes belonging to 2193793
[2025-12-16 23:34:29] 2025-12-16 22:33:57,708 | INFO     | ready for new job
[2025-12-16 23:34:29] 2025-12-16 22:33:57,708 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 23:34:29] 2025-12-16 22:33:57,708 | INFO     | ***************************************
[2025-12-16 23:34:29] 2025-12-16 22:33:57,708 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 23:34:29] 2025-12-16 22:33:57,708 | INFO     | ***************************************
[2025-12-16 23:34:29] 2025-12-16 22:33:57,708 | INFO     | 
[2025-12-16 23:34:29] 2025-12-16 22:33:57,709 | INFO     | architecture information:
[2025-12-16 23:34:29] 2025-12-16 22:33:57,709 | INFO     | executing command: cat /etc/os-release
[2025-12-16 23:34:29] 2025-12-16 22:33:57,722 | INFO     | cat /etc/os-release:
[2025-12-16 23:34:29] NAME="CentOS Linux"
[2025-12-16 23:34:29] VERSION="7 (Core)"
[2025-12-16 23:34:29] ID="centos"
[2025-12-16 23:34:29] ID_LIKE="rhel fedora"
[2025-12-16 23:34:29] VERSION_ID="7"
[2025-12-16 23:34:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 23:34:29] ANSI_COLOR="0;31"
[2025-12-16 23:34:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 23:34:29] HOME_URL="https://www.centos.org/"
[2025-12-16 23:34:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 23:34:29] 
[2025-12-16 23:34:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 23:34:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 23:34:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 23:34:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 23:34:29] 
[2025-12-16 23:34:29] 2025-12-16 22:33:57,722 | INFO     | ***************************************
[2025-12-16 23:34:29] 2025-12-16 22:33:58,225 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-16 23:34:29] 2025-12-16 22:33:58,242 | INFO     | sufficient remaining disk space (334431780864 B)
[2025-12-16 23:34:29] 2025-12-16 22:33:58,242 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 23:34:29] 2025-12-16 22:33:58,242 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 23:34:29] 2025-12-16 22:33:58,242 | INFO     | update_server=False
[2025-12-16 23:34:29] 2025-12-16 22:33:58,242 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 23:34:29] 2025-12-16 22:33:58,243 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 23:34:29] 2025-12-16 22:33:58,243 | INFO     | aborting loop
[2025-12-16 23:34:29] 2025-12-16 22:33:58,243 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 23:34:29] 2025-12-16 22:33:58,389 | INFO     | all payload control threads have been joined
[2025-12-16 23:34:29] 2025-12-16 22:33:58,789 | INFO     | all data control threads have been joined
[2025-12-16 23:34:29] 2025-12-16 22:33:59,089 | INFO     | all job control threads have been joined
[2025-12-16 23:34:29] 2025-12-16 22:33:59,239 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 23:34:29] 2025-12-16 22:33:59,248 | INFO     | [job] job monitor thread has finished
[2025-12-16 23:34:29] 2025-12-16 22:33:59,248 | INFO     | [job] retrieve thread has finished
[2025-12-16 23:34:29] 2025-12-16 22:33:59,355 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 23:34:29] 2025-12-16 22:33:59,395 | INFO     | [payload] control thread has finished
[2025-12-16 23:34:29] 2025-12-16 22:33:59,685 | INFO     | [data] copytool_in thread has finished
[2025-12-16 23:34:29] 2025-12-16 22:33:59,794 | INFO     | [data] control thread has finished
[2025-12-16 23:34:29] 2025-12-16 22:33:59,821 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 23:34:29] 2025-12-16 22:34:00,095 | INFO     | [job] control thread has finished
[2025-12-16 23:34:29] 2025-12-16 22:34:00,558 | INFO     | [payload] validate_post thread has finished
[2025-12-16 23:34:29] 2025-12-16 22:34:00,658 | INFO     | [job] validate thread has finished
[2025-12-16 23:34:29] 2025-12-16 22:34:00,736 | INFO     | [payload] failed_post thread has finished
[2025-12-16 23:34:29] 2025-12-16 22:34:00,740 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 23:34:29] 2025-12-16 22:34:01,137 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 23:34:29] 2025-12-16 22:34:01,244 | INFO     | [data] copytool_out thread has finished
[2025-12-16 23:34:29] 2025-12-16 22:34:02,142 | INFO     | [job] queue monitor thread has finished
[2025-12-16 23:34:29] 2025-12-16 22:34:02,250 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 23:34:29] 2025-12-16 22:34:08,527 | INFO     | job.realtimelogging is not enabled
[2025-12-16 23:34:29] 2025-12-16 22:34:09,533 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 23:34:29] 2025-12-16 22:34:16,107 | INFO     | [monitor] cgroup control has ended
[2025-12-16 23:34:29] 2025-12-16 22:34:16,182 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139634129958720)>', '<ExcThread(monitor, started 139633178425088)>']
[2025-12-16 23:34:29] 2025-12-16 22:34:21,208 | INFO     | all workflow threads have been joined
[2025-12-16 23:34:29] 2025-12-16 22:34:21,208 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 23:34:29] 2025-12-16 22:34:21,209 | INFO     | traces error code: 0
[2025-12-16 23:34:29] 2025-12-16 22:34:21,209 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 23:34:29] 2025-12-16 22:34:29,182 | INFO     | PID=2187193 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 23:34:29] 2025-12-16 22:34:29,182 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 23:34:29] 2025-12-16 22:34:29,182 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 23:34:29] 2025-12-16 22:34:29,182 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 23:34:29] 2025-12-16 22:34:29,182 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 23:34:29] 2025-12-16 22:34:29,182 | INFO     | [monitor] control thread has ended
[2025-12-16 23:34:29] 2025-12-16 22:34:29,250 [wrapper] ==== pilot stdout END ====
[2025-12-16 23:34:29] 2025-12-16 22:34:29,254 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 23:34:29] 2025-12-16 22:34:29,257 [wrapper] pilotpid: 2187193
[2025-12-16 23:34:29] 2025-12-16 22:34:29,261 [wrapper] Pilot exit status: 0
[2025-12-16 23:34:29] 2025-12-16 22:34:29,271 [wrapper] pandaids: 6929807211
[2025-12-16 23:34:29] 2025-12-16 22:34:29,297 [wrapper] cleanup supervisor_pilot 2211893 2187194
[2025-12-16 23:34:29] 2025-12-16 22:34:29,301 [wrapper] Test setup, not cleaning
[2025-12-16 23:34:29] 2025-12-16 22:34:29,305 [wrapper] apfmon messages muted
[2025-12-16 23:34:29] 2025-12-16 22:34:29,309 [wrapper] ==== wrapper stdout END ====
[2025-12-16 23:34:29] 2025-12-16 22:34:29,312 [wrapper] ==== wrapper stderr END ====
[2025-12-16 23:34:29]  *** Error codes and diagnostics ***
[2025-12-16 23:34:29]     "exeErrorCode": 0,
[2025-12-16 23:34:29]     "exeErrorDiag": "",
[2025-12-16 23:34:29]     "pilotErrorCode": 0,
[2025-12-16 23:34:29]     "pilotErrorDiag": "",
[2025-12-16 23:34:29]  *** Listing of results directory ***
[2025-12-16 23:34:29] total 440280
[2025-12-16 23:34:29] -rw-r--r-- 1 boinc boinc    579449 Dec 15 16:52 pilot3.tar.gz
[2025-12-16 23:34:29] -rw-r--r-- 1 boinc boinc      5112 Dec 15 16:52 queuedata.json
[2025-12-16 23:34:29] -rwx------ 1 boinc boinc     36322 Dec 15 16:52 runpilot2-wrapper.sh
[2025-12-16 23:34:29] -rw-r--r-- 1 boinc boinc       100 Dec 16 21:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 23:34:29] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 21:57 run_atlas
[2025-12-16 23:34:29] -rw-r--r-- 1 boinc boinc       105 Dec 16 21:57 job.xml
[2025-12-16 23:34:29] -rw-r--r-- 2 boinc boinc 225658504 Dec 16 21:57 EVNT.47898824._000069.pool.root.1
[2025-12-16 23:34:29] -rw-r--r-- 2 boinc boinc    592389 Dec 16 21:57 input.tar.gz
[2025-12-16 23:34:29] -rw-r--r-- 2 boinc boinc     15847 Dec 16 21:57 start_atlas.sh
[2025-12-16 23:34:29] drwxrwx--x 2 boinc boinc      4096 Dec 16 21:57 shared
[2025-12-16 23:34:29] -rw-r--r-- 1 boinc boinc         0 Dec 16 21:57 boinc_setup_complete
[2025-12-16 23:34:29] -rw-r--r-- 1 boinc boinc      6372 Dec 16 21:57 init_data.xml
[2025-12-16 23:34:29] -rw-r--r-- 1 boinc boinc         0 Dec 16 21:57 boinc_lockfile
[2025-12-16 23:34:29] -rw-r--r-- 1 boinc boinc      2513 Dec 16 21:57 pandaJob.out
[2025-12-16 23:34:29] -rw------- 1 boinc boinc    987409 Dec 16 21:57 agis_schedconf.cvmfs.json
[2025-12-16 23:34:29] -rw------- 1 boinc boinc   1516240 Dec 16 21:57 agis_ddmendpoints.agis.ALL.json
[2025-12-16 23:34:29] drwx------ 5 boinc boinc      4096 Dec 16 21:57 pilot3
[2025-12-16 23:34:29] -rw------- 1 boinc boinc 219015936 Dec 16 23:33 HITS.47898826._001770.pool.root.1
[2025-12-16 23:34:29] -rw-r--r-- 1 boinc boinc       530 Dec 16 23:33 boinc_task_state.xml
[2025-12-16 23:34:29] -rw------- 1 boinc boinc      1021 Dec 16 23:33 memory_monitor_summary.json
[2025-12-16 23:34:29] -rw------- 1 boinc boinc        95 Dec 16 23:33 pilot_heartbeat.json
[2025-12-16 23:34:29] -rw------- 1 boinc boinc    292218 Dec 16 23:33 log.47898826._001770.job.log.tgz.1
[2025-12-16 23:34:29] -rw------- 1 boinc boinc      7761 Dec 16 23:33 heartbeat.json
[2025-12-16 23:34:29] -rw-r--r-- 1 boinc boinc        27 Dec 16 23:34 wrapper_checkpoint.txt
[2025-12-16 23:34:29] -rw-r--r-- 1 boinc boinc      8192 Dec 16 23:34 boinc_mmap_file
[2025-12-16 23:34:29] -rw------- 1 boinc boinc       747 Dec 16 23:34 pilotlog.txt
[2025-12-16 23:34:29] -rw------- 1 boinc boinc    843138 Dec 16 23:34 log.47898826._001770.job.log.1
[2025-12-16 23:34:29] -rw------- 1 boinc boinc       357 Dec 16 23:34 output.list
[2025-12-16 23:34:29] -rw-r--r-- 1 boinc boinc       620 Dec 16 23:34 runtime_log
[2025-12-16 23:34:29] -rw------- 1 boinc boinc   1157120 Dec 16 23:34 result.tar.gz
[2025-12-16 23:34:29] -rw-r--r-- 1 boinc boinc      8912 Dec 16 23:34 runtime_log.err
[2025-12-16 23:34:29] -rw------- 1 boinc boinc       662 Dec 16 23:34 5JCNDmV3Pp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmLlTKDmGJhFEn.diag
[2025-12-16 23:34:29] -rw-r--r-- 1 boinc boinc     11515 Dec 16 23:34 stderr.txt
[2025-12-16 23:34:29] HITS file was successfully produced:
[2025-12-16 23:34:29] -rw------- 1 boinc boinc 219015936 Dec 16 23:33 shared/HITS.pool.root.1
[2025-12-16 23:34:29]  *** Contents of shared directory: ***
[2025-12-16 23:34:29] total 435992
[2025-12-16 23:34:29] -rw-r--r-- 2 boinc boinc 225658504 Dec 16 21:57 ATLAS.root_0
[2025-12-16 23:34:29] -rw-r--r-- 2 boinc boinc    592389 Dec 16 21:57 input.tar.gz
[2025-12-16 23:34:29] -rw-r--r-- 2 boinc boinc     15847 Dec 16 21:57 start_atlas.sh
[2025-12-16 23:34:29] -rw------- 1 boinc boinc 219015936 Dec 16 23:33 HITS.pool.root.1
[2025-12-16 23:34:29] -rw------- 1 boinc boinc   1157120 Dec 16 23:34 result.tar.gz
23:34:31 (2183394): run_atlas exited; CPU time 22154.457628
23:34:31 (2183394): called boinc_finish(0)

</stderr_txt>
]]>

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