Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:29:13 (132457): wrapper (7.7.26015): starting
12:29:13 (132457): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 12:29:13] Arguments: --nthreads 8
[2025-12-16 12:29:13] Threads: 8
[2025-12-16 12:29:13] Checking for CVMFS
[2025-12-16 12:29:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 12:29:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 12:29:13] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 12:29:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 12:29:13] 2.13.2.0 6987 353 58780 154069 3 56 2206195 4097024 0 130560 0 338393 99.994 12327 26566 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-12-16 12:29:13] CVMFS is ok
[2025-12-16 12:29:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 12:29:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 12:29:13] Further information can be found at the LHC@home message board.
[2025-12-16 12:29:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 12:29:13] Checking for apptainer binary...
[2025-12-16 12:29:13] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-12-16 12:29:13] apptainer is not installed, using version from CVMFS
[2025-12-16 12:29:13] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 12:29:13] pckeatlas02
[2025-12-16 12:29:13] apptainer works
[2025-12-16 12:29:13] Set ATHENA_PROC_NUMBER=8
[2025-12-16 12:29:13] Set ATHENA_CORE_NUMBER=8
[2025-12-16 12:29:13] Starting ATLAS job with PandaID=6930225514
[2025-12-16 12:29:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 13:54:41]  *** The last 200 lines of the pilot log: ***
[2025-12-16 13:54:41]  lfn=log.47886831._010293.job.log.tgz.1
[2025-12-16 13:54:41]  mtime=0
[2025-12-16 13:54:41]  protocol_id=None
[2025-12-16 13:54:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-16 13:54:41]  replicas=None
[2025-12-16 13:54:41]  scope=mc23_13p6TeV
[2025-12-16 13:54:41]  status=None
[2025-12-16 13:54:41]  status_code=0
[2025-12-16 13:54:41]  storage_token=
[2025-12-16 13:54:41]  surl=/var/lib/boinc/slots/19/PanDA_Pilot-6930225514/log.47886831._010293.job.log.tgz.1
[2025-12-16 13:54:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3d/e0/log.47886831._010293.job.log.tgz.1
[2025-12-16 13:54:41]  workdir=None
[2025-12-16 13:54:41] ]
[2025-12-16 13:54:41] 2025-12-16 12:54:06,130 | INFO     | transferring file log.47886831._010293.job.log.tgz.1 from /var/lib/boinc/slots/19/PanDA_Pilot-6930225514/log.47886831._010293.job.log.tgz.1 to /var/lib/boinc/slots
[2025-12-16 13:54:41] 2025-12-16 12:54:06,130 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/19/PanDA_Pilot-6930225514/log.47886831._010293.job.log.tgz.1 /var/lib/boinc/slots/19/log.47886831._010293.j
[2025-12-16 13:54:41] 2025-12-16 12:54:06,138 | INFO     | adding to output.list: log.47886831._010293.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3d/e0/log.47886831._010293.job.log.tg
[2025-12-16 13:54:41] 2025-12-16 12:54:06,138 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-16 13:54:41] 2025-12-16 12:54:06,138 | INFO     | summary of transferred files:
[2025-12-16 13:54:41] 2025-12-16 12:54:06,138 | INFO     |  -- lfn=log.47886831._010293.job.log.tgz.1, status_code=0, status=transferred
[2025-12-16 13:54:41] 2025-12-16 12:54:06,138 | INFO     | stage-out finished correctly
[2025-12-16 13:54:41] 2025-12-16 12:54:06,176 | INFO     | time since job start (5089s) is within the limit (174528.0s)
[2025-12-16 13:54:41] 2025-12-16 12:54:07,086 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-16 13:54:41] 2025-12-16 12:54:07,120 | INFO     | job 6930225514 has state=finished
[2025-12-16 13:54:41] 2025-12-16 12:54:07,120 | INFO     | preparing for final server update for job 6930225514 in state='finished'
[2025-12-16 13:54:41] 2025-12-16 12:54:07,120 | INFO     | this job has now completed (state=finished)
[2025-12-16 13:54:41] 2025-12-16 12:54:07,120 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-16 13:54:41] 2025-12-16 12:54:07,121 | INFO     | log transfer has been attempted: DONE
[2025-12-16 13:54:41] 2025-12-16 12:54:07,121 | INFO     | job 6930225514 has finished - writing final server update
[2025-12-16 13:54:41] 2025-12-16 12:54:07,121 | INFO     | total number of processed events: 400 (read)
[2025-12-16 13:54:41] 2025-12-16 12:54:07,121 | INFO     | executing command: lscpu
[2025-12-16 13:54:41] 2025-12-16 12:54:07,129 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 13:54:41] 2025-12-16 12:54:07,223 | INFO     | PID=136223 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 13:54:41] 2025-12-16 12:54:08,223 | INFO     | time since job start (5091s) is within the limit (174528.0s)
[2025-12-16 13:54:41] 2025-12-16 12:54:09,730 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 13:54:41] 2025-12-16 12:54:09,731 | INFO     | found 4 cores (4 cores per socket, 1 socket) HT, CPU MHz: 3840.739
[2025-12-16 13:54:41] 2025-12-16 12:54:09,732 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6930225514/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 13:54:41] 2025-12-16 12:54:09,732 | INFO     | extracted standard info from prmon json
[2025-12-16 13:54:41] 2025-12-16 12:54:09,732 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 13:54:41] 2025-12-16 12:54:09,732 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 13:54:41] 2025-12-16 12:54:09,733 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 13:54:41] 2025-12-16 12:54:09,733 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 13:54:41] 2025-12-16 12:54:09,733 | INFO     | fitting pss+swap vs Time
[2025-12-16 13:54:41] 2025-12-16 12:54:09,734 | INFO     | sum of square deviations: 141539398.0
[2025-12-16 13:54:41] 2025-12-16 12:54:09,734 | INFO     | sum of deviations: -17642362294.0
[2025-12-16 13:54:41] 2025-12-16 12:54:09,734 | INFO     | mean x: 1765887198.0
[2025-12-16 13:54:41] 2025-12-16 12:54:09,734 | INFO     | mean y: 2732848.0
[2025-12-16 13:54:41] 2025-12-16 12:54:09,734 | INFO     | intersect: 220114038658.7857
[2025-12-16 13:54:41] 2025-12-16 12:54:09,734 | INFO     | chi2: 0.12766617393025254
[2025-12-16 13:54:41] 2025-12-16 12:54:09,734 | INFO     | current memory leak: -124.65 B/s (using 77 data points, chi2=0.13)
[2025-12-16 13:54:41] 2025-12-16 12:54:09,734 | INFO     | could have reported an average CPU frequency of 3759 MHz (6 samples)
[2025-12-16 13:54:41] 2025-12-16 12:54:09,734 | INFO     | ..............................
[2025-12-16 13:54:41] 2025-12-16 12:54:09,734 | INFO     | . Timing measurements:
[2025-12-16 13:54:41] 2025-12-16 12:54:09,734 | INFO     | . get job = 0 s
[2025-12-16 13:54:41] 2025-12-16 12:54:09,734 | INFO     | . initial setup = 0 s
[2025-12-16 13:54:41] 2025-12-16 12:54:09,734 | INFO     | . payload setup = 3 s
[2025-12-16 13:54:41] 2025-12-16 12:54:09,734 | INFO     | . stage-in = 0 s
[2025-12-16 13:54:41] 2025-12-16 12:54:09,734 | INFO     | . payload execution = 5069 s
[2025-12-16 13:54:41] 2025-12-16 12:54:09,735 | INFO     | . stage-out = 0 s
[2025-12-16 13:54:41] 2025-12-16 12:54:09,735 | INFO     | . log creation = 0 s
[2025-12-16 13:54:41] 2025-12-16 12:54:09,735 | INFO     | ..............................
[2025-12-16 13:54:41] 2025-12-16 12:54:09,770 | INFO     | 
[2025-12-16 13:54:41] 2025-12-16 12:54:09,770 | INFO     | job summary report
[2025-12-16 13:54:41] 2025-12-16 12:54:09,770 | INFO     | --------------------------------------------------
[2025-12-16 13:54:41] 2025-12-16 12:54:09,770 | INFO     | PanDA job id: 6930225514
[2025-12-16 13:54:41] 2025-12-16 12:54:09,770 | INFO     | task id: 47886831
[2025-12-16 13:54:41] 2025-12-16 12:54:09,770 | INFO     | errors: (none)
[2025-12-16 13:54:41] 2025-12-16 12:54:09,770 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 13:54:41] 2025-12-16 12:54:09,770 | INFO     | pilot state: finished 
[2025-12-16 13:54:41] 2025-12-16 12:54:09,770 | INFO     | transexitcode: 0
[2025-12-16 13:54:41] 2025-12-16 12:54:09,770 | INFO     | exeerrorcode: 0
[2025-12-16 13:54:41] 2025-12-16 12:54:09,770 | INFO     | exeerrordiag: 
[2025-12-16 13:54:41] 2025-12-16 12:54:09,770 | INFO     | exitcode: 0
[2025-12-16 13:54:41] 2025-12-16 12:54:09,771 | INFO     | exitmsg: OK
[2025-12-16 13:54:41] 2025-12-16 12:54:09,771 | INFO     | cpuconsumptiontime: 38306 s
[2025-12-16 13:54:41] 2025-12-16 12:54:09,771 | INFO     | nevents: 400
[2025-12-16 13:54:41] 2025-12-16 12:54:09,771 | INFO     | neventsw: 0
[2025-12-16 13:54:41] 2025-12-16 12:54:09,771 | INFO     | pid: 143539
[2025-12-16 13:54:41] 2025-12-16 12:54:09,771 | INFO     | pgrp: 143539
[2025-12-16 13:54:41] 2025-12-16 12:54:09,771 | INFO     | corecount: 8
[2025-12-16 13:54:41] 2025-12-16 12:54:09,771 | INFO     | event service: False
[2025-12-16 13:54:41] 2025-12-16 12:54:09,771 | INFO     | sizes: {0: 2283994, 2: 2284256, 11: 2284284, 5075: 2310701, 5076: 2319701, 5077: 2319757, 5079: 2320079}
[2025-12-16 13:54:41] 2025-12-16 12:54:09,771 | INFO     | --------------------------------------------------
[2025-12-16 13:54:41] 2025-12-16 12:54:09,771 | INFO     | 
[2025-12-16 13:54:41] 2025-12-16 12:54:09,771 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-12-16 13:54:41] 2025-12-16 12:54:09,779 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 13:54:41] 2025-12-16 12:54:09,779 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 13:54:41] 2025-12-16 12:54:09,779 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 13:54:41] 2025-12-16 12:54:09,779 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 13:54:41] 2025-12-16 12:54:09,779 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 13:54:41] 2025-12-16 12:54:09,779 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 13:54:41] 2025-12-16 12:54:09,779 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 13:54:41] 2025-12-16 12:54:09,779 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 13:54:41] 2025-12-16 12:54:09,779 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 13:54:41] 2025-12-16 12:54:09,779 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 13:54:41] 2025-12-16 12:54:09,779 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 13:54:41] 2025-12-16 12:54:09,779 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 13:54:41] 2025-12-16 12:54:09,779 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 13:54:41] 2025-12-16 12:54:09,779 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 13:54:41] 2025-12-16 12:54:09,779 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 13:54:41] 2025-12-16 12:54:09,779 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 13:54:41] 2025-12-16 12:54:09,779 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 13:54:41] 2025-12-16 12:54:09,779 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 13:54:41] 2025-12-16 12:54:09,779 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 13:54:41] 2025-12-16 12:54:09,779 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 13:54:41] 2025-12-16 12:54:09,780 | INFO     | job 6930225514 has completed (purged errors)
[2025-12-16 13:54:41] 2025-12-16 12:54:09,780 | INFO     | overall cleanup function is called
[2025-12-16 13:54:41] 2025-12-16 12:54:10,786 | INFO     | --- collectZombieJob: --- 10, [143539]
[2025-12-16 13:54:41] 2025-12-16 12:54:10,786 | INFO     | zombie collector waiting for pid 143539
[2025-12-16 13:54:41] 2025-12-16 12:54:10,786 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 13:54:41] 2025-12-16 12:54:10,786 | INFO     | collected zombie processes
[2025-12-16 13:54:41] 2025-12-16 12:54:10,786 | INFO     | will attempt to kill all subprocesses of pid=143539
[2025-12-16 13:54:41] 2025-12-16 12:54:10,818 | INFO     | process IDs to be killed: [143539] (in reverse order)
[2025-12-16 13:54:41] 2025-12-16 12:54:10,834 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 13:54:41] 2025-12-16 12:54:10,834 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 13:54:41] 2025-12-16 12:54:10,835 | INFO     | did not find any defunct processes belonging to 143539
[2025-12-16 13:54:41] 2025-12-16 12:54:10,836 | INFO     | did not find any defunct processes belonging to 143539
[2025-12-16 13:54:41] 2025-12-16 12:54:10,836 | INFO     | ready for new job
[2025-12-16 13:54:41] 2025-12-16 12:54:10,836 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 13:54:41] 2025-12-16 12:54:10,837 | INFO     | ***************************************
[2025-12-16 13:54:41] 2025-12-16 12:54:10,837 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 13:54:41] 2025-12-16 12:54:10,837 | INFO     | ***************************************
[2025-12-16 13:54:41] 2025-12-16 12:54:10,837 | INFO     | 
[2025-12-16 13:54:41] 2025-12-16 12:54:10,837 | INFO     | architecture information:
[2025-12-16 13:54:41] 2025-12-16 12:54:10,837 | INFO     | executing command: cat /etc/os-release
[2025-12-16 13:54:41] 2025-12-16 12:54:10,842 | INFO     | cat /etc/os-release:
[2025-12-16 13:54:41] NAME="CentOS Linux"
[2025-12-16 13:54:41] VERSION="7 (Core)"
[2025-12-16 13:54:41] ID="centos"
[2025-12-16 13:54:41] ID_LIKE="rhel fedora"
[2025-12-16 13:54:41] VERSION_ID="7"
[2025-12-16 13:54:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 13:54:41] ANSI_COLOR="0;31"
[2025-12-16 13:54:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 13:54:41] HOME_URL="https://www.centos.org/"
[2025-12-16 13:54:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 13:54:41] 
[2025-12-16 13:54:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 13:54:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 13:54:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 13:54:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 13:54:41] 
[2025-12-16 13:54:41] 2025-12-16 12:54:10,843 | INFO     | ***************************************
[2025-12-16 13:54:41] 2025-12-16 12:54:11,344 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-12-16 13:54:41] 2025-12-16 12:54:11,351 | INFO     | sufficient remaining disk space (116353138688 B)
[2025-12-16 13:54:41] 2025-12-16 12:54:11,352 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 13:54:41] 2025-12-16 12:54:11,352 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 13:54:41] 2025-12-16 12:54:11,352 | INFO     | update_server=False
[2025-12-16 13:54:41] 2025-12-16 12:54:11,352 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 13:54:41] 2025-12-16 12:54:11,352 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 13:54:41] 2025-12-16 12:54:11,379 | WARNING  | process 143539 can no longer be monitored (due to stat problems) - aborting
[2025-12-16 13:54:41] 2025-12-16 12:54:11,403 | INFO     | using path: /var/lib/boinc/slots/19/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 13:54:41] 2025-12-16 12:54:11,432 | INFO     | number of running child processes to parent process 143539: 1
[2025-12-16 13:54:41] 2025-12-16 12:54:11,432 | INFO     | maximum number of monitored processes: 6
[2025-12-16 13:54:41] 2025-12-16 12:54:11,432 | INFO     | aborting job monitoring since job object (job id=6930225514) has expired
[2025-12-16 13:54:41] 2025-12-16 12:54:11,432 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 13:54:41] 2025-12-16 12:54:11,432 | INFO     | will abort loop
[2025-12-16 13:54:41] 2025-12-16 12:54:11,679 | INFO     | all data control threads have been joined
[2025-12-16 13:54:41] 2025-12-16 12:54:11,680 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 13:54:41] 2025-12-16 12:54:12,357 | INFO     | [job] retrieve thread has finished
[2025-12-16 13:54:41] 2025-12-16 12:54:12,358 | INFO     | [job] queue monitor thread has finished
[2025-12-16 13:54:41] 2025-12-16 12:54:12,359 | INFO     | all job control threads have been joined
[2025-12-16 13:54:41] 2025-12-16 12:54:12,380 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 13:54:41] 2025-12-16 12:54:12,383 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 13:54:41] 2025-12-16 12:54:12,401 | INFO     | all payload control threads have been joined
[2025-12-16 13:54:41] 2025-12-16 12:54:12,437 | INFO     | [job] job monitor thread has finished
[2025-12-16 13:54:41] 2025-12-16 12:54:12,490 | INFO     | [payload] failed_post thread has finished
[2025-12-16 13:54:41] 2025-12-16 12:54:12,684 | INFO     | [data] control thread has finished
[2025-12-16 13:54:41] 2025-12-16 12:54:12,779 | INFO     | [data] copytool_in thread has finished
[2025-12-16 13:54:41] 2025-12-16 12:54:12,806 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 13:54:41] 2025-12-16 12:54:13,126 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 13:54:41] 2025-12-16 12:54:13,240 | INFO     | [payload] validate_post thread has finished
[2025-12-16 13:54:41] 2025-12-16 12:54:13,364 | INFO     | [job] control thread has finished
[2025-12-16 13:54:41] 2025-12-16 12:54:13,406 | INFO     | [payload] control thread has finished
[2025-12-16 13:54:41] 2025-12-16 12:54:13,686 | INFO     | [data] copytool_out thread has finished
[2025-12-16 13:54:41] 2025-12-16 12:54:13,795 | INFO     | [job] validate thread has finished
[2025-12-16 13:54:41] 2025-12-16 12:54:17,132 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 13:54:41] 2025-12-16 12:54:21,940 | INFO     | job.realtimelogging is not enabled
[2025-12-16 13:54:41] 2025-12-16 12:54:22,946 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 13:54:41] 2025-12-16 12:54:25,318 | INFO     | [monitor] cgroup control has ended
[2025-12-16 13:54:41] 2025-12-16 12:54:27,290 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139736224827200)>', '<ExcThread(monitor, started 139735527835392)>']
[2025-12-16 13:54:41] 2025-12-16 12:54:32,315 | INFO     | all workflow threads have been joined
[2025-12-16 13:54:41] 2025-12-16 12:54:32,315 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 13:54:41] 2025-12-16 12:54:32,316 | INFO     | traces error code: 0
[2025-12-16 13:54:41] 2025-12-16 12:54:32,316 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 13:54:41] 2025-12-16 12:54:41,353 | INFO     | PID=136223 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 13:54:41] 2025-12-16 12:54:41,353 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 13:54:41] 2025-12-16 12:54:41,353 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 13:54:41] 2025-12-16 12:54:41,353 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 13:54:41] 2025-12-16 12:54:41,353 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 13:54:41] 2025-12-16 12:54:41,353 | INFO     | [monitor] control thread has ended
[2025-12-16 13:54:41] 2025-12-16 12:54:41,409 [wrapper] ==== pilot stdout END ====
[2025-12-16 13:54:41] 2025-12-16 12:54:41,410 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 13:54:41] 2025-12-16 12:54:41,411 [wrapper] pilotpid: 136223
[2025-12-16 13:54:41] 2025-12-16 12:54:41,412 [wrapper] Pilot exit status: 0
[2025-12-16 13:54:41] 2025-12-16 12:54:41,416 [wrapper] pandaids: 6930225514
[2025-12-16 13:54:41] 2025-12-16 12:54:41,424 [wrapper] cleanup supervisor_pilot  159286 136224
[2025-12-16 13:54:41] 2025-12-16 12:54:41,425 [wrapper] Test setup, not cleaning
[2025-12-16 13:54:41] 2025-12-16 12:54:41,427 [wrapper] apfmon messages muted
[2025-12-16 13:54:41] 2025-12-16 12:54:41,428 [wrapper] ==== wrapper stdout END ====
[2025-12-16 13:54:41] 2025-12-16 12:54:41,429 [wrapper] ==== wrapper stderr END ====
[2025-12-16 13:54:41]  *** Error codes and diagnostics ***
[2025-12-16 13:54:41]     "exeErrorCode": 0,
[2025-12-16 13:54:41]     "exeErrorDiag": "",
[2025-12-16 13:54:41]     "pilotErrorCode": 0,
[2025-12-16 13:54:41]     "pilotErrorDiag": "",
[2025-12-16 13:54:41]  *** Listing of results directory ***
[2025-12-16 13:54:41] total 337628
[2025-12-16 13:54:41] -rw-r--r--. 1 boinc boinc    579449 Dec 15 21:57 pilot3.tar.gz
[2025-12-16 13:54:41] -rwx------. 1 boinc boinc     36322 Dec 15 22:01 runpilot2-wrapper.sh
[2025-12-16 13:54:41] -rw-r--r--. 1 boinc boinc      5112 Dec 15 22:03 queuedata.json
[2025-12-16 13:54:41] -rw-r--r--. 1 boinc boinc       100 Dec 16 12:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 13:54:41] -rwxr-xr-x. 1 boinc boinc      7986 Dec 16 12:29 run_atlas
[2025-12-16 13:54:41] -rw-r--r--. 1 boinc boinc       105 Dec 16 12:29 job.xml
[2025-12-16 13:54:41] -rw-r--r--. 2 boinc boinc     15847 Dec 16 12:29 start_atlas.sh
[2025-12-16 13:54:41] drwxrwx--x. 2 boinc boinc        68 Dec 16 12:29 shared
[2025-12-16 13:54:41] -rw-r--r--. 2 boinc boinc    592415 Dec 16 12:29 input.tar.gz
[2025-12-16 13:54:41] -rw-r--r--. 1 boinc boinc      6275 Dec 16 12:29 init_data.xml
[2025-12-16 13:54:41] -rw-r--r--. 2 boinc boinc 193087609 Dec 16 12:29 EVNT.47886829._000406.pool.root.1
[2025-12-16 13:54:41] -rw-r--r--. 1 boinc boinc         0 Dec 16 12:29 boinc_lockfile
[2025-12-16 13:54:41] -rw-r--r--. 1 boinc boinc      2539 Dec 16 12:29 pandaJob.out
[2025-12-16 13:54:41] -rw-------. 1 boinc boinc    991017 Dec 16 12:29 agis_schedconf.cvmfs.json
[2025-12-16 13:54:41] -rw-------. 1 boinc boinc   1516240 Dec 16 12:29 agis_ddmendpoints.agis.ALL.json
[2025-12-16 13:54:41] drwx------. 5 boinc boinc      4096 Dec 16 12:29 pilot3
[2025-12-16 13:54:41] -rw-------. 1 boinc boinc        95 Dec 16 13:53 pilot_heartbeat.json
[2025-12-16 13:54:41] -rw-------. 1 boinc boinc 146593945 Dec 16 13:53 HITS.47886831._010293.pool.root.1
[2025-12-16 13:54:41] -rw-r--r--. 1 boinc boinc       529 Dec 16 13:53 boinc_task_state.xml
[2025-12-16 13:54:41] -rw-------. 1 boinc boinc      1014 Dec 16 13:54 memory_monitor_summary.json
[2025-12-16 13:54:41] -rw-------. 1 boinc boinc    332423 Dec 16 13:54 log.47886831._010293.job.log.tgz.1
[2025-12-16 13:54:41] -rw-------. 1 boinc boinc      7773 Dec 16 13:54 heartbeat.json
[2025-12-16 13:54:41] -rw-r--r--. 1 boinc boinc        27 Dec 16 13:54 wrapper_checkpoint.txt
[2025-12-16 13:54:41] -rw-r--r--. 1 boinc boinc      8192 Dec 16 13:54 boinc_mmap_file
[2025-12-16 13:54:41] -rw-------. 1 boinc boinc       746 Dec 16 13:54 pilotlog.txt
[2025-12-16 13:54:41] -rw-------. 1 boinc boinc    743991 Dec 16 13:54 log.47886831._010293.job.log.1
[2025-12-16 13:54:41] -rw-------. 1 boinc boinc       357 Dec 16 13:54 output.list
[2025-12-16 13:54:41] -rw-r--r--. 1 boinc boinc       620 Dec 16 13:54 runtime_log
[2025-12-16 13:54:41] -rw-------. 1 boinc boinc   1095680 Dec 16 13:54 result.tar.gz
[2025-12-16 13:54:41] -rw-------. 1 boinc boinc       651 Dec 16 13:54 ZJhKDmsrUp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkpYKDmIbkW1m.diag
[2025-12-16 13:54:41] -rw-r--r--. 1 boinc boinc      8846 Dec 16 13:54 runtime_log.err
[2025-12-16 13:54:41] -rw-r--r--. 1 boinc boinc     21841 Dec 16 13:54 stderr.txt
[2025-12-16 13:54:41] HITS file was successfully produced:
[2025-12-16 13:54:41] -rw-------. 1 boinc boinc 146593945 Dec 16 13:53 shared/HITS.pool.root.1
[2025-12-16 13:54:41]  *** Contents of shared directory: ***
[2025-12-16 13:54:41] total 333392
[2025-12-16 13:54:41] -rw-r--r--. 2 boinc boinc     15847 Dec 16 12:29 start_atlas.sh
[2025-12-16 13:54:41] -rw-r--r--. 2 boinc boinc    592415 Dec 16 12:29 input.tar.gz
[2025-12-16 13:54:41] -rw-r--r--. 2 boinc boinc 193087609 Dec 16 12:29 ATLAS.root_0
[2025-12-16 13:54:41] -rw-------. 1 boinc boinc 146593945 Dec 16 13:53 HITS.pool.root.1
[2025-12-16 13:54:41] -rw-------. 1 boinc boinc   1095680 Dec 16 13:54 result.tar.gz
13:54:42 (132457): run_atlas exited; CPU time 38346.307695
13:54:42 (132457): called boinc_finish(0)

</stderr_txt>
]]>

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