Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:26:24 (3016865): wrapper (7.7.26015): starting
11:26:24 (3016865): wrapper: running run_atlas (--nthreads 3)
[2025-12-16 11:26:24] Arguments: --nthreads 3
[2025-12-16 11:26:24] Threads: 3
[2025-12-16 11:26:24] Checking for CVMFS
[2025-12-16 11:26:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 11:26:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 11:26:24] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 11:26:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 11:26:24] 2.9.2.0 2672154 1377 62780 154067 1 56 18580935 36864000 0 130560 0 885264 99.989 52035 20739 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-16 11:26:24] CVMFS is ok
[2025-12-16 11:26:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 11:26:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 11:26:24] Further information can be found at the LHC@home message board.
[2025-12-16 11:26:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 11:26:24] Checking for apptainer binary...
[2025-12-16 11:26:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 11:26:24] Running /usr/bin/apptainer --version
[2025-12-16 11:26:24] apptainer version 1.4.1-1.1
[2025-12-16 11:26:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 11:26:24] atlasA219a
[2025-12-16 11:26:24] apptainer works
[2025-12-16 11:26:24] Set ATHENA_PROC_NUMBER=3
[2025-12-16 11:26:24] Set ATHENA_CORE_NUMBER=3
[2025-12-16 11:26:24] Starting ATLAS job with PandaID=6929962956
[2025-12-16 11:26:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 13:07:51]  *** The last 200 lines of the pilot log: ***
[2025-12-16 13:07:51]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-12-16 13:07:51]  is_altstaged=None
[2025-12-16 13:07:51]  is_tar=False
[2025-12-16 13:07:51]  lfn=log.47886831._009572.job.log.tgz.1
[2025-12-16 13:07:51]  mtime=0
[2025-12-16 13:07:51]  protocol_id=None
[2025-12-16 13:07:51]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-16 13:07:51]  replicas=None
[2025-12-16 13:07:51]  scope=mc23_13p6TeV
[2025-12-16 13:07:51]  status=None
[2025-12-16 13:07:51]  status_code=0
[2025-12-16 13:07:51]  storage_token=
[2025-12-16 13:07:51]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6929962956/log.47886831._009572.job.log.tgz.1
[2025-12-16 13:07:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/e5/log.47886831._009572.job.log.tgz.1
[2025-12-16 13:07:51]  workdir=None
[2025-12-16 13:07:51] ]
[2025-12-16 13:07:51] 2025-12-16 12:07:15,548 | INFO     | transferring file log.47886831._009572.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6929962956/log.47886831._009572.job.log.tgz.1 to /local/data/boinc/
[2025-12-16 13:07:51] 2025-12-16 12:07:15,548 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6929962956/log.47886831._009572.job.log.tgz.1 /local/data/boinc/slots/0/log.47886831._0095
[2025-12-16 13:07:51] 2025-12-16 12:07:15,560 | INFO     | adding to output.list: log.47886831._009572.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/e5/log.47886831._009572.job.log.tg
[2025-12-16 13:07:51] 2025-12-16 12:07:15,560 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-16 13:07:51] 2025-12-16 12:07:15,561 | INFO     | summary of transferred files:
[2025-12-16 13:07:51] 2025-12-16 12:07:15,561 | INFO     |  -- lfn=log.47886831._009572.job.log.tgz.1, status_code=0, status=transferred
[2025-12-16 13:07:51] 2025-12-16 12:07:15,561 | INFO     | stage-out finished correctly
[2025-12-16 13:07:51] 2025-12-16 12:07:15,592 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-16 13:07:51] 2025-12-16 12:07:15,997 | INFO     | time since job start (6045s) is within the limit (174528.0s)
[2025-12-16 13:07:51] 2025-12-16 12:07:16,724 | INFO     | job 6929962956 has state=finished
[2025-12-16 13:07:51] 2025-12-16 12:07:16,724 | INFO     | preparing for final server update for job 6929962956 in state='finished'
[2025-12-16 13:07:51] 2025-12-16 12:07:16,724 | INFO     | this job has now completed (state=finished)
[2025-12-16 13:07:51] 2025-12-16 12:07:16,725 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-16 13:07:51] 2025-12-16 12:07:16,725 | INFO     | log transfer has been attempted: DONE
[2025-12-16 13:07:51] 2025-12-16 12:07:16,725 | INFO     | job 6929962956 has finished - writing final server update
[2025-12-16 13:07:51] 2025-12-16 12:07:16,725 | INFO     | total number of processed events: 400 (read)
[2025-12-16 13:07:51] 2025-12-16 12:07:16,725 | INFO     | executing command: lscpu
[2025-12-16 13:07:51] 2025-12-16 12:07:16,739 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 13:07:51] 2025-12-16 12:07:17,144 | INFO     | monitor loop #464: job 0:6929962956 is in state 'finished'
[2025-12-16 13:07:51] 2025-12-16 12:07:17,145 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 13:07:51] 2025-12-16 12:07:18,003 | INFO     | time since job start (6048s) is within the limit (174528.0s)
[2025-12-16 13:07:51] 2025-12-16 12:07:19,092 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 13:07:51] 2025-12-16 12:07:19,093 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 4298.399083333335
[2025-12-16 13:07:51] 2025-12-16 12:07:19,094 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6929962956/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 13:07:51] 2025-12-16 12:07:19,095 | INFO     | extracted standard info from prmon json
[2025-12-16 13:07:51] 2025-12-16 12:07:19,095 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 13:07:51] 2025-12-16 12:07:19,095 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 13:07:51] 2025-12-16 12:07:19,095 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 13:07:51] 2025-12-16 12:07:19,095 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 13:07:51] 2025-12-16 12:07:19,096 | INFO     | fitting pss+swap vs Time
[2025-12-16 13:07:51] 2025-12-16 12:07:19,096 | INFO     | sum of square deviations: 241429643.0
[2025-12-16 13:07:51] 2025-12-16 12:07:19,096 | INFO     | sum of deviations: -18362236805.5
[2025-12-16 13:07:51] 2025-12-16 12:07:19,096 | INFO     | mean x: 1765883890.5
[2025-12-16 13:07:51] 2025-12-16 12:07:19,096 | INFO     | mean y: 2434724.054347826
[2025-12-16 13:07:51] 2025-12-16 12:07:19,096 | INFO     | intersect: 134308967117.75313
[2025-12-16 13:07:51] 2025-12-16 12:07:19,096 | INFO     | chi2: 0.10877598231064174
[2025-12-16 13:07:51] 2025-12-16 12:07:19,096 | INFO     | current memory leak: -76.06 B/s (using 92 data points, chi2=0.11)
[2025-12-16 13:07:51] 2025-12-16 12:07:19,096 | INFO     | could have reported an average CPU frequency of 4300 MHz (7 samples)
[2025-12-16 13:07:51] 2025-12-16 12:07:19,096 | INFO     | ..............................
[2025-12-16 13:07:51] 2025-12-16 12:07:19,097 | INFO     | . Timing measurements:
[2025-12-16 13:07:51] 2025-12-16 12:07:19,097 | INFO     | . get job = 0 s
[2025-12-16 13:07:51] 2025-12-16 12:07:19,097 | INFO     | . initial setup = 1 s
[2025-12-16 13:07:51] 2025-12-16 12:07:19,097 | INFO     | . payload setup = 2 s
[2025-12-16 13:07:51] 2025-12-16 12:07:19,097 | INFO     | . stage-in = 0 s
[2025-12-16 13:07:51] 2025-12-16 12:07:19,097 | INFO     | . payload execution = 6024 s
[2025-12-16 13:07:51] 2025-12-16 12:07:19,097 | INFO     | . stage-out = 0 s
[2025-12-16 13:07:51] 2025-12-16 12:07:19,097 | INFO     | . log creation = 0 s
[2025-12-16 13:07:51] 2025-12-16 12:07:19,097 | INFO     | ..............................
[2025-12-16 13:07:51] 2025-12-16 12:07:19,128 | INFO     | 
[2025-12-16 13:07:51] 2025-12-16 12:07:19,128 | INFO     | job summary report
[2025-12-16 13:07:51] 2025-12-16 12:07:19,128 | INFO     | --------------------------------------------------
[2025-12-16 13:07:51] 2025-12-16 12:07:19,128 | INFO     | PanDA job id: 6929962956
[2025-12-16 13:07:51] 2025-12-16 12:07:19,128 | INFO     | task id: 47886831
[2025-12-16 13:07:51] 2025-12-16 12:07:19,128 | INFO     | errors: (none)
[2025-12-16 13:07:51] 2025-12-16 12:07:19,128 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 13:07:51] 2025-12-16 12:07:19,128 | INFO     | pilot state: finished 
[2025-12-16 13:07:51] 2025-12-16 12:07:19,128 | INFO     | transexitcode: 0
[2025-12-16 13:07:51] 2025-12-16 12:07:19,128 | INFO     | exeerrorcode: 0
[2025-12-16 13:07:51] 2025-12-16 12:07:19,128 | INFO     | exeerrordiag: 
[2025-12-16 13:07:51] 2025-12-16 12:07:19,128 | INFO     | exitcode: 0
[2025-12-16 13:07:51] 2025-12-16 12:07:19,128 | INFO     | exitmsg: OK
[2025-12-16 13:07:51] 2025-12-16 12:07:19,128 | INFO     | cpuconsumptiontime: 17475 s
[2025-12-16 13:07:51] 2025-12-16 12:07:19,128 | INFO     | nevents: 400
[2025-12-16 13:07:51] 2025-12-16 12:07:19,128 | INFO     | neventsw: 0
[2025-12-16 13:07:51] 2025-12-16 12:07:19,129 | INFO     | pid: 3027038
[2025-12-16 13:07:51] 2025-12-16 12:07:19,129 | INFO     | pgrp: 3027038
[2025-12-16 13:07:51] 2025-12-16 12:07:19,129 | INFO     | corecount: 3
[2025-12-16 13:07:51] 2025-12-16 12:07:19,129 | INFO     | event service: False
[2025-12-16 13:07:51] 2025-12-16 12:07:19,129 | INFO     | sizes: {0: 2283993, 2: 2284255, 10: 2284283, 6031: 2320149, 6035: 2320287}
[2025-12-16 13:07:51] 2025-12-16 12:07:19,129 | INFO     | --------------------------------------------------
[2025-12-16 13:07:51] 2025-12-16 12:07:19,129 | INFO     | 
[2025-12-16 13:07:51] 2025-12-16 12:07:19,129 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-12-16 13:07:51] 2025-12-16 12:07:19,140 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 13:07:51] 2025-12-16 12:07:19,140 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 13:07:51] 2025-12-16 12:07:19,140 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 13:07:51] 2025-12-16 12:07:19,141 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 13:07:51] 2025-12-16 12:07:19,141 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 13:07:51] 2025-12-16 12:07:19,141 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 13:07:51] 2025-12-16 12:07:19,141 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 13:07:51] 2025-12-16 12:07:19,141 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 13:07:51] 2025-12-16 12:07:19,141 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 13:07:51] 2025-12-16 12:07:19,141 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 13:07:51] 2025-12-16 12:07:19,141 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 13:07:51] 2025-12-16 12:07:19,141 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 13:07:51] 2025-12-16 12:07:19,141 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 13:07:51] 2025-12-16 12:07:19,141 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 13:07:51] 2025-12-16 12:07:19,141 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 13:07:51] 2025-12-16 12:07:19,141 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 13:07:51] 2025-12-16 12:07:19,141 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 13:07:51] 2025-12-16 12:07:19,141 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 13:07:51] 2025-12-16 12:07:19,141 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 13:07:51] 2025-12-16 12:07:19,141 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 13:07:51] 2025-12-16 12:07:19,141 | INFO     | job 6929962956 has completed (purged errors)
[2025-12-16 13:07:51] 2025-12-16 12:07:19,141 | INFO     | overall cleanup function is called
[2025-12-16 13:07:51] 2025-12-16 12:07:20,147 | INFO     | --- collectZombieJob: --- 10, [3027038]
[2025-12-16 13:07:51] 2025-12-16 12:07:20,147 | INFO     | zombie collector waiting for pid 3027038
[2025-12-16 13:07:51] 2025-12-16 12:07:20,147 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 13:07:51] 2025-12-16 12:07:20,147 | INFO     | collected zombie processes
[2025-12-16 13:07:51] 2025-12-16 12:07:20,147 | INFO     | will attempt to kill all subprocesses of pid=3027038
[2025-12-16 13:07:51] 2025-12-16 12:07:20,186 | INFO     | process IDs to be killed: [3027038] (in reverse order)
[2025-12-16 13:07:51] 2025-12-16 12:07:20,211 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 13:07:51] 2025-12-16 12:07:20,211 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 13:07:51] 2025-12-16 12:07:20,212 | INFO     | did not find any defunct processes belonging to 3027038
[2025-12-16 13:07:51] 2025-12-16 12:07:20,213 | INFO     | did not find any defunct processes belonging to 3027038
[2025-12-16 13:07:51] 2025-12-16 12:07:20,213 | INFO     | ready for new job
[2025-12-16 13:07:51] 2025-12-16 12:07:20,213 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 13:07:51] 2025-12-16 12:07:20,214 | INFO     | ***************************************
[2025-12-16 13:07:51] 2025-12-16 12:07:20,214 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 13:07:51] 2025-12-16 12:07:20,214 | INFO     | ***************************************
[2025-12-16 13:07:51] 2025-12-16 12:07:20,214 | INFO     | 
[2025-12-16 13:07:51] 2025-12-16 12:07:20,214 | INFO     | architecture information:
[2025-12-16 13:07:51] 2025-12-16 12:07:20,215 | INFO     | executing command: cat /etc/os-release
[2025-12-16 13:07:51] 2025-12-16 12:07:20,225 | INFO     | cat /etc/os-release:
[2025-12-16 13:07:51] NAME="CentOS Linux"
[2025-12-16 13:07:51] VERSION="7 (Core)"
[2025-12-16 13:07:51] ID="centos"
[2025-12-16 13:07:51] ID_LIKE="rhel fedora"
[2025-12-16 13:07:51] VERSION_ID="7"
[2025-12-16 13:07:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 13:07:51] ANSI_COLOR="0;31"
[2025-12-16 13:07:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 13:07:51] HOME_URL="https://www.centos.org/"
[2025-12-16 13:07:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 13:07:51] 
[2025-12-16 13:07:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 13:07:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 13:07:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 13:07:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 13:07:51] 
[2025-12-16 13:07:51] 2025-12-16 12:07:20,225 | INFO     | ***************************************
[2025-12-16 13:07:51] 2025-12-16 12:07:20,727 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-16 13:07:51] 2025-12-16 12:07:20,738 | INFO     | sufficient remaining disk space (844564004864 B)
[2025-12-16 13:07:51] 2025-12-16 12:07:20,739 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 13:07:51] 2025-12-16 12:07:20,739 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 13:07:51] 2025-12-16 12:07:20,739 | INFO     | update_server=False
[2025-12-16 13:07:51] 2025-12-16 12:07:20,739 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 13:07:51] 2025-12-16 12:07:20,739 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 13:07:51] 2025-12-16 12:07:20,739 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 13:07:51] 2025-12-16 12:07:20,739 | INFO     | aborting loop
[2025-12-16 13:07:51] 2025-12-16 12:07:21,099 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 13:07:51] 2025-12-16 12:07:21,325 | INFO     | all data control threads have been joined
[2025-12-16 13:07:51] 2025-12-16 12:07:21,456 | INFO     | all job control threads have been joined
[2025-12-16 13:07:51] 2025-12-16 12:07:21,631 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 13:07:51] 2025-12-16 12:07:21,702 | INFO     | job.realtimelogging is not enabled
[2025-12-16 13:07:51] 2025-12-16 12:07:21,744 | INFO     | [job] retrieve thread has finished
[2025-12-16 13:07:51] 2025-12-16 12:07:21,744 | INFO     | [job] queue monitor thread has finished
[2025-12-16 13:07:51] 2025-12-16 12:07:21,744 | INFO     | [job] job monitor thread has finished
[2025-12-16 13:07:51] 2025-12-16 12:07:21,800 | INFO     | [data] copytool_in thread has finished
[2025-12-16 13:07:51] 2025-12-16 12:07:21,915 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 13:07:51] 2025-12-16 12:07:22,113 | INFO     | all payload control threads have been joined
[2025-12-16 13:07:51] 2025-12-16 12:07:22,132 | INFO     | [job] validate thread has finished
[2025-12-16 13:07:51] 2025-12-16 12:07:22,234 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 13:07:51] 2025-12-16 12:07:22,301 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 13:07:51] 2025-12-16 12:07:22,330 | INFO     | [data] control thread has finished
[2025-12-16 13:07:51] 2025-12-16 12:07:22,340 | INFO     | [payload] validate_post thread has finished
[2025-12-16 13:07:51] 2025-12-16 12:07:22,461 | INFO     | [job] control thread has finished
[2025-12-16 13:07:51] 2025-12-16 12:07:22,591 | INFO     | [payload] failed_post thread has finished
[2025-12-16 13:07:51] 2025-12-16 12:07:22,707 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 13:07:51] 2025-12-16 12:07:23,105 | INFO     | [data] copytool_out thread has finished
[2025-12-16 13:07:51] 2025-12-16 12:07:23,118 | INFO     | [payload] control thread has finished
[2025-12-16 13:07:51] 2025-12-16 12:07:25,636 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 13:07:51] 2025-12-16 12:07:38,792 | INFO     | [monitor] cgroup control has ended
[2025-12-16 13:07:51] 2025-12-16 12:07:39,007 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140512871073600)>', '<ExcThread(monitor, started 140512363259648)>']
[2025-12-16 13:07:51] 2025-12-16 12:07:44,033 | INFO     | all workflow threads have been joined
[2025-12-16 13:07:51] 2025-12-16 12:07:44,033 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 13:07:51] 2025-12-16 12:07:44,033 | INFO     | traces error code: 0
[2025-12-16 13:07:51] 2025-12-16 12:07:44,033 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 13:07:51] 2025-12-16 12:07:51,122 | INFO     | PID=3020588 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 13:07:51] 2025-12-16 12:07:51,122 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 13:07:51] 2025-12-16 12:07:51,122 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 13:07:51] 2025-12-16 12:07:51,122 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 13:07:51] 2025-12-16 12:07:51,122 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 13:07:51] 2025-12-16 12:07:51,122 | CRITICAL | thread 'MainThread' is not alive
[2025-12-16 13:07:51] 2025-12-16 12:07:51,122 | INFO     | [monitor] control thread has ended
[2025-12-16 13:07:51] 2025-12-16 12:07:51,171 [wrapper] ==== pilot stdout END ====
[2025-12-16 13:07:51] 2025-12-16 12:07:51,174 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 13:07:51] 2025-12-16 12:07:51,176 [wrapper] pilotpid: 3020588
[2025-12-16 13:07:51] 2025-12-16 12:07:51,179 [wrapper] Pilot exit status: 0
[2025-12-16 13:07:51] 2025-12-16 12:07:51,186 [wrapper] pandaids: 6929962956
[2025-12-16 13:07:51] 2025-12-16 12:07:51,203 [wrapper] cleanup supervisor_pilot 3039535 3020589
[2025-12-16 13:07:51] 2025-12-16 12:07:51,205 [wrapper] Test setup, not cleaning
[2025-12-16 13:07:51] 2025-12-16 12:07:51,208 [wrapper] apfmon messages muted
[2025-12-16 13:07:51] 2025-12-16 12:07:51,210 [wrapper] ==== wrapper stdout END ====
[2025-12-16 13:07:51] 2025-12-16 12:07:51,212 [wrapper] ==== wrapper stderr END ====
[2025-12-16 13:07:51]  *** Error codes and diagnostics ***
[2025-12-16 13:07:51]     "exeErrorCode": 0,
[2025-12-16 13:07:51]     "exeErrorDiag": "",
[2025-12-16 13:07:51]     "pilotErrorCode": 0,
[2025-12-16 13:07:51]     "pilotErrorDiag": "",
[2025-12-16 13:07:51]  *** Listing of results directory ***
[2025-12-16 13:07:51] total 337332
[2025-12-16 13:07:51] -rw-r--r-- 1 boinc boinc    579449 Dec 15 21:57 pilot3.tar.gz
[2025-12-16 13:07:51] -rw-r--r-- 1 boinc boinc      5112 Dec 15 21:57 queuedata.json
[2025-12-16 13:07:51] -rwx------ 1 boinc boinc     36322 Dec 15 21:57 runpilot2-wrapper.sh
[2025-12-16 13:07:51] -rw-r--r-- 1 boinc boinc       100 Dec 16 11:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 13:07:51] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 11:26 run_atlas
[2025-12-16 13:07:51] -rw-r--r-- 1 boinc boinc       105 Dec 16 11:26 job.xml
[2025-12-16 13:07:51] -rw-r--r-- 2 boinc boinc 192840697 Dec 16 11:26 EVNT.47886829._000378.pool.root.1
[2025-12-16 13:07:51] -rw-r--r-- 2 boinc boinc    592411 Dec 16 11:26 input.tar.gz
[2025-12-16 13:07:51] -rw-r--r-- 2 boinc boinc     15847 Dec 16 11:26 start_atlas.sh
[2025-12-16 13:07:51] drwxrwx--x 2 boinc boinc      4096 Dec 16 11:26 shared
[2025-12-16 13:07:51] -rw-r--r-- 1 boinc boinc         0 Dec 16 11:26 boinc_setup_complete
[2025-12-16 13:07:51] -rw-r--r-- 1 boinc boinc      6199 Dec 16 11:26 init_data.xml
[2025-12-16 13:07:51] -rw-r--r-- 1 boinc boinc         0 Dec 16 11:26 boinc_lockfile
[2025-12-16 13:07:51] -rw-r--r-- 1 boinc boinc      2538 Dec 16 11:26 pandaJob.out
[2025-12-16 13:07:51] -rw------- 1 boinc boinc    990636 Dec 16 11:26 agis_schedconf.cvmfs.json
[2025-12-16 13:07:51] -rw------- 1 boinc boinc   1516240 Dec 16 11:26 agis_ddmendpoints.agis.ALL.json
[2025-12-16 13:07:51] drwx------ 5 boinc boinc      4096 Dec 16 11:26 pilot3
[2025-12-16 13:07:51] -rw------- 1 boinc boinc 146398708 Dec 16 13:06 HITS.47886831._009572.pool.root.1
[2025-12-16 13:07:51] -rw------- 1 boinc boinc        95 Dec 16 13:07 pilot_heartbeat.json
[2025-12-16 13:07:51] -rw-r--r-- 1 boinc boinc       530 Dec 16 13:07 boinc_task_state.xml
[2025-12-16 13:07:51] -rw------- 1 boinc boinc      1016 Dec 16 13:07 memory_monitor_summary.json
[2025-12-16 13:07:51] -rw------- 1 boinc boinc    263825 Dec 16 13:07 log.47886831._009572.job.log.tgz.1
[2025-12-16 13:07:51] -rw------- 1 boinc boinc      7755 Dec 16 13:07 heartbeat.json
[2025-12-16 13:07:51] -rw-r--r-- 1 boinc boinc      8192 Dec 16 13:07 boinc_mmap_file
[2025-12-16 13:07:51] -rw-r--r-- 1 boinc boinc        27 Dec 16 13:07 wrapper_checkpoint.txt
[2025-12-16 13:07:51] -rw------- 1 boinc boinc       817 Dec 16 13:07 pilotlog.txt
[2025-12-16 13:07:51] -rw------- 1 boinc boinc    876790 Dec 16 13:07 log.47886831._009572.job.log.1
[2025-12-16 13:07:51] -rw------- 1 boinc boinc       357 Dec 16 13:07 output.list
[2025-12-16 13:07:51] -rw-r--r-- 1 boinc boinc       620 Dec 16 13:07 runtime_log
[2025-12-16 13:07:51] -rw------- 1 boinc boinc   1157120 Dec 16 13:07 result.tar.gz
[2025-12-16 13:07:51] -rw-r--r-- 1 boinc boinc      8917 Dec 16 13:07 runtime_log.err
[2025-12-16 13:07:51] -rw------- 1 boinc boinc       662 Dec 16 13:07 ZUdLDmsoUp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmqEUKDmgGSDbn.diag
[2025-12-16 13:07:51] -rw-r--r-- 1 boinc boinc     21390 Dec 16 13:07 stderr.txt
[2025-12-16 13:07:51] HITS file was successfully produced:
[2025-12-16 13:07:51] -rw------- 1 boinc boinc 146398708 Dec 16 13:06 shared/HITS.pool.root.1
[2025-12-16 13:07:51]  *** Contents of shared directory: ***
[2025-12-16 13:07:51] total 333024
[2025-12-16 13:07:51] -rw-r--r-- 2 boinc boinc 192840697 Dec 16 11:26 ATLAS.root_0
[2025-12-16 13:07:51] -rw-r--r-- 2 boinc boinc    592411 Dec 16 11:26 input.tar.gz
[2025-12-16 13:07:51] -rw-r--r-- 2 boinc boinc     15847 Dec 16 11:26 start_atlas.sh
[2025-12-16 13:07:51] -rw------- 1 boinc boinc 146398708 Dec 16 13:06 HITS.pool.root.1
[2025-12-16 13:07:51] -rw------- 1 boinc boinc   1157120 Dec 16 13:07 result.tar.gz
13:07:52 (3016865): run_atlas exited; CPU time 17507.578233
13:07:52 (3016865): called boinc_finish(0)

</stderr_txt>
]]>

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