Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:20:02 (36537): wrapper (7.7.26015): starting
19:20:02 (36537): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 19:20:02] Arguments: --nthreads 4
[2025-12-16 19:20:02] Threads: 4
[2025-12-16 19:20:02] Checking for CVMFS
[2025-12-16 19:20:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 19:20:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 19:20:02] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 19:20:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 19:20:02] 2.9.2.0 4802 99 52388 154082 0 56 19166351 36864001 0 130560 0 71358 99.988 4035 22926 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-16 19:20:02] CVMFS is ok
[2025-12-16 19:20:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 19:20:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 19:20:02] Further information can be found at the LHC@home message board.
[2025-12-16 19:20:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 19:20:02] Checking for apptainer binary...
[2025-12-16 19:20:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 19:20:02] Running /usr/bin/apptainer --version
[2025-12-16 19:20:02] apptainer version 1.4.1-1.1
[2025-12-16 19:20:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 19:20:03] thA332a
[2025-12-16 19:20:03] apptainer works
[2025-12-16 19:20:03] Set ATHENA_PROC_NUMBER=4
[2025-12-16 19:20:03] Set ATHENA_CORE_NUMBER=4
[2025-12-16 19:20:03] Starting ATLAS job with PandaID=6929962973
[2025-12-16 19:20:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 20:32:39]  *** The last 200 lines of the pilot log: ***
[2025-12-16 20:32:39] 2025-12-16 19:32:08,428 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 20:32:39] 2025-12-16 19:32:08,428 | INFO     | job 6929962973 has completed (purged errors)
[2025-12-16 20:32:39] 2025-12-16 19:32:08,429 | INFO     | overall cleanup function is called
[2025-12-16 20:32:39] 2025-12-16 19:32:09,435 | INFO     | --- collectZombieJob: --- 10, [46933]
[2025-12-16 20:32:39] 2025-12-16 19:32:09,435 | INFO     | zombie collector waiting for pid 46933
[2025-12-16 20:32:39] 2025-12-16 19:32:09,436 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 20:32:39] 2025-12-16 19:32:09,436 | INFO     | collected zombie processes
[2025-12-16 20:32:39] 2025-12-16 19:32:09,436 | INFO     | will attempt to kill all subprocesses of pid=46933
[2025-12-16 20:32:39] 2025-12-16 19:32:09,481 | INFO     | process IDs to be killed: [46933] (in reverse order)
[2025-12-16 20:32:39] 2025-12-16 19:32:09,514 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 20:32:39] 2025-12-16 19:32:09,514 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 20:32:39] 2025-12-16 19:32:09,516 | INFO     | did not find any defunct processes belonging to 46933
[2025-12-16 20:32:39] 2025-12-16 19:32:09,517 | INFO     | did not find any defunct processes belonging to 46933
[2025-12-16 20:32:39] 2025-12-16 19:32:09,517 | INFO     | ready for new job
[2025-12-16 20:32:39] 2025-12-16 19:32:09,518 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 20:32:39] 2025-12-16 19:32:09,518 | INFO     | ***************************************
[2025-12-16 20:32:39] 2025-12-16 19:32:09,518 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 20:32:39] 2025-12-16 19:32:09,518 | INFO     | ***************************************
[2025-12-16 20:32:39] 2025-12-16 19:32:09,518 | INFO     | 
[2025-12-16 20:32:39] 2025-12-16 19:32:09,519 | INFO     | architecture information:
[2025-12-16 20:32:39] 2025-12-16 19:32:09,519 | INFO     | executing command: cat /etc/os-release
[2025-12-16 20:32:39] 2025-12-16 19:32:09,533 | INFO     | cat /etc/os-release:
[2025-12-16 20:32:39] NAME="CentOS Linux"
[2025-12-16 20:32:39] VERSION="7 (Core)"
[2025-12-16 20:32:39] ID="centos"
[2025-12-16 20:32:39] ID_LIKE="rhel fedora"
[2025-12-16 20:32:39] VERSION_ID="7"
[2025-12-16 20:32:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 20:32:39] ANSI_COLOR="0;31"
[2025-12-16 20:32:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 20:32:39] HOME_URL="https://www.centos.org/"
[2025-12-16 20:32:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 20:32:39] 
[2025-12-16 20:32:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 20:32:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 20:32:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 20:32:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 20:32:39] 
[2025-12-16 20:32:39] 2025-12-16 19:32:09,533 | INFO     | ***************************************
[2025-12-16 20:32:39] 2025-12-16 19:32:10,036 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-16 20:32:39] 2025-12-16 19:32:10,056 | INFO     | sufficient remaining disk space (341065072640 B)
[2025-12-16 20:32:39] 2025-12-16 19:32:10,057 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 20:32:39] 2025-12-16 19:32:10,057 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 20:32:39] 2025-12-16 19:32:10,057 | INFO     | update_server=False
[2025-12-16 20:32:39] 2025-12-16 19:32:10,057 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 20:32:39] 2025-12-16 19:32:10,099 | INFO     | all data control threads have been joined
[2025-12-16 20:32:39] 2025-12-16 19:32:10,297 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 20:32:39] 2025-12-16 19:32:10,298 | INFO     | aborting loop
[2025-12-16 20:32:39] 2025-12-16 19:32:10,334 | INFO     | all job control threads have been joined
[2025-12-16 20:32:39] 2025-12-16 19:32:10,425 | INFO     | all payload control threads have been joined
[2025-12-16 20:32:39] 2025-12-16 19:32:10,835 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 20:32:39] 2025-12-16 19:32:11,062 | INFO     | [job] retrieve thread has finished
[2025-12-16 20:32:39] 2025-12-16 19:32:11,105 | INFO     | [data] control thread has finished
[2025-12-16 20:32:39] 2025-12-16 19:32:11,132 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 20:32:39] 2025-12-16 19:32:11,138 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 20:32:39] 2025-12-16 19:32:11,303 | INFO     | [job] job monitor thread has finished
[2025-12-16 20:32:39] 2025-12-16 19:32:11,340 | INFO     | [job] control thread has finished
[2025-12-16 20:32:39] 2025-12-16 19:32:11,430 | INFO     | [payload] control thread has finished
[2025-12-16 20:32:39] 2025-12-16 19:32:11,471 | INFO     | [payload] validate_post thread has finished
[2025-12-16 20:32:39] 2025-12-16 19:32:11,747 | INFO     | [data] copytool_in thread has finished
[2025-12-16 20:32:39] 2025-12-16 19:32:12,341 | INFO     | [payload] failed_post thread has finished
[2025-12-16 20:32:39] 2025-12-16 19:32:12,430 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 20:32:39] 2025-12-16 19:32:12,519 | INFO     | [job] validate thread has finished
[2025-12-16 20:32:39] 2025-12-16 19:32:12,841 | INFO     | [data] copytool_out thread has finished
[2025-12-16 20:32:39] 2025-12-16 19:32:13,012 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 20:32:39] 2025-12-16 19:32:13,372 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 20:32:39] 2025-12-16 19:32:14,018 | INFO     | [job] queue monitor thread has finished
[2025-12-16 20:32:39] 2025-12-16 19:32:16,099 | INFO     | [monitor] cgroup control has ended
[2025-12-16 20:32:39] 2025-12-16 19:32:17,379 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 20:32:39] 2025-12-16 19:32:20,589 | INFO     | job.realtimelogging is not enabled
[2025-12-16 20:32:39] 2025-12-16 19:32:21,596 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 20:32:39] 2025-12-16 19:32:21,619 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139747622688576)>', '<ExcThread(monitor, started 139747112490752)>']
[2025-12-16 20:32:39] 2025-12-16 19:32:26,645 | INFO     | all workflow threads have been joined
[2025-12-16 20:32:39] 2025-12-16 19:32:26,645 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 20:32:39] 2025-12-16 19:32:26,646 | INFO     | traces error code: 0
[2025-12-16 20:32:39] 2025-12-16 19:32:26,646 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 20:32:39] 2025-12-16 19:32:39,800 | INFO     | PID=40333 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 20:32:39] 2025-12-16 19:32:39,801 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 20:32:39] 2025-12-16 19:32:39,801 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 20:32:39] 2025-12-16 19:32:39,801 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 20:32:39] 2025-12-16 19:32:39,801 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 20:32:39] 2025-12-16 19:32:39,801 | INFO     | [monitor] control thread has ended
[2025-12-16 20:32:39] 2025-12-16 19:32:39,875 [wrapper] ==== pilot stdout END ====
[2025-12-16 20:32:39] 2025-12-16 19:32:39,879 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 20:32:39] 2025-12-16 19:32:39,884 [wrapper] pilotpid: 40333
[2025-12-16 20:32:39] 2025-12-16 19:32:39,888 [wrapper] Pilot exit status: 0
[2025-12-16 20:32:39] 2025-12-16 19:32:39,900 [wrapper] pandaids: 6929962973
[2025-12-16 20:32:39] 2025-12-16 19:32:39,922 [wrapper] cleanup supervisor_pilot   56853 40334
[2025-12-16 20:32:39] 2025-12-16 19:32:39,926 [wrapper] Test setup, not cleaning
[2025-12-16 20:32:39] 2025-12-16 19:32:39,930 [wrapper] apfmon messages muted
[2025-12-16 20:32:39] 2025-12-16 19:32:39,934 [wrapper] ==== wrapper stdout END ====
[2025-12-16 20:32:39] 2025-12-16 19:32:39,937 [wrapper] ==== wrapper stderr END ====
[2025-12-16 20:32:39]  *** Error codes and diagnostics ***
[2025-12-16 20:32:39]     "exeErrorCode": 0,
[2025-12-16 20:32:39]     "exeErrorDiag": "",
[2025-12-16 20:32:39]     "pilotErrorCode": 0,
[2025-12-16 20:32:39]     "pilotErrorDiag": "",
[2025-12-16 20:32:39]  *** Listing of results directory ***
[2025-12-16 20:32:39] total 334112
[2025-12-16 20:32:39] -rw-r--r-- 1 boinc boinc    579449 Dec 15 21:57 pilot3.tar.gz
[2025-12-16 20:32:39] -rw-r--r-- 1 boinc boinc      5112 Dec 15 21:57 queuedata.json
[2025-12-16 20:32:39] -rwx------ 1 boinc boinc     36322 Dec 15 21:57 runpilot2-wrapper.sh
[2025-12-16 20:32:39] -rw-r--r-- 1 boinc boinc       100 Dec 16 19:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 20:32:39] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 19:20 run_atlas
[2025-12-16 20:32:39] -rw-r--r-- 1 boinc boinc       105 Dec 16 19:20 job.xml
[2025-12-16 20:32:39] -rw-r--r-- 2 boinc boinc 193233828 Dec 16 19:20 EVNT.47886829._000379.pool.root.1
[2025-12-16 20:32:39] -rw-r--r-- 2 boinc boinc    592407 Dec 16 19:20 input.tar.gz
[2025-12-16 20:32:39] -rw-r--r-- 2 boinc boinc     15847 Dec 16 19:20 start_atlas.sh
[2025-12-16 20:32:39] drwxrwx--x 2 boinc boinc      4096 Dec 16 19:20 shared
[2025-12-16 20:32:39] -rw-r--r-- 1 boinc boinc         0 Dec 16 19:20 boinc_setup_complete
[2025-12-16 20:32:39] -rw-r--r-- 1 boinc boinc      6370 Dec 16 19:20 init_data.xml
[2025-12-16 20:32:39] -rw-r--r-- 1 boinc boinc         0 Dec 16 19:20 boinc_lockfile
[2025-12-16 20:32:39] -rw-r--r-- 1 boinc boinc      2535 Dec 16 19:20 pandaJob.out
[2025-12-16 20:32:39] -rw------- 1 boinc boinc    987409 Dec 16 19:20 agis_schedconf.cvmfs.json
[2025-12-16 20:32:39] -rw------- 1 boinc boinc   1516240 Dec 16 19:20 agis_ddmendpoints.agis.ALL.json
[2025-12-16 20:32:39] drwx------ 5 boinc boinc      4096 Dec 16 19:20 pilot3
[2025-12-16 20:32:39] -rw------- 1 boinc boinc 143234724 Dec 16 20:31 HITS.47886831._009589.pool.root.1
[2025-12-16 20:32:39] -rw-r--r-- 1 boinc boinc       530 Dec 16 20:31 boinc_task_state.xml
[2025-12-16 20:32:39] -rw------- 1 boinc boinc      1021 Dec 16 20:31 memory_monitor_summary.json
[2025-12-16 20:32:39] -rw------- 1 boinc boinc    245559 Dec 16 20:32 log.47886831._009589.job.log.tgz.1
[2025-12-16 20:32:39] -rw------- 1 boinc boinc      7760 Dec 16 20:32 heartbeat.json
[2025-12-16 20:32:39] -rw-r--r-- 1 boinc boinc        27 Dec 16 20:32 wrapper_checkpoint.txt
[2025-12-16 20:32:39] -rw-r--r-- 1 boinc boinc      8192 Dec 16 20:32 boinc_mmap_file
[2025-12-16 20:32:39] -rw------- 1 boinc boinc       745 Dec 16 20:32 pilotlog.txt
[2025-12-16 20:32:39] -rw------- 1 boinc boinc        95 Dec 16 20:32 pilot_heartbeat.json
[2025-12-16 20:32:39] -rw------- 1 boinc boinc    638710 Dec 16 20:32 log.47886831._009589.job.log.1
[2025-12-16 20:32:39] -rw------- 1 boinc boinc       357 Dec 16 20:32 output.list
[2025-12-16 20:32:39] -rw-r--r-- 1 boinc boinc       620 Dec 16 20:32 runtime_log
[2025-12-16 20:32:39] -rw------- 1 boinc boinc    901120 Dec 16 20:32 result.tar.gz
[2025-12-16 20:32:39] -rw------- 1 boinc boinc       659 Dec 16 20:32 uXtLDmsoUp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2EUKDmUlo5mn.diag
[2025-12-16 20:32:39] -rw-r--r-- 1 boinc boinc      8902 Dec 16 20:32 runtime_log.err
[2025-12-16 20:32:39] -rw-r--r-- 1 boinc boinc     10975 Dec 16 20:32 stderr.txt
[2025-12-16 20:32:40] HITS file was successfully produced:
[2025-12-16 20:32:40] -rw------- 1 boinc boinc 143234724 Dec 16 20:31 shared/HITS.pool.root.1
[2025-12-16 20:32:40]  *** Contents of shared directory: ***
[2025-12-16 20:32:40] total 330072
[2025-12-16 20:32:40] -rw-r--r-- 2 boinc boinc 193233828 Dec 16 19:20 ATLAS.root_0
[2025-12-16 20:32:40] -rw-r--r-- 2 boinc boinc    592407 Dec 16 19:20 input.tar.gz
[2025-12-16 20:32:40] -rw-r--r-- 2 boinc boinc     15847 Dec 16 19:20 start_atlas.sh
[2025-12-16 20:32:40] -rw------- 1 boinc boinc 143234724 Dec 16 20:31 HITS.pool.root.1
[2025-12-16 20:32:40] -rw------- 1 boinc boinc    901120 Dec 16 20:32 result.tar.gz
20:32:41 (36537): run_atlas exited; CPU time 16307.926659
20:32:41 (36537): called boinc_finish(0)

</stderr_txt>
]]>

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