Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:58:06 (13178): wrapper (7.7.26015): starting
12:58:06 (13178): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 12:58:06] Arguments: --nthreads 8
[2025-12-16 12:58:06] Threads: 8
[2025-12-16 12:58:06] Checking for CVMFS
[2025-12-16 12:58:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 12:58:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 12:58:07] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 12:58:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 12:58:08] 2.11.2.0 22837 825 62712 154069 3 267 24882152 25165824 4699 130560 0 797877 99.872 281391 1809 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-16 12:58:08] CVMFS is ok
[2025-12-16 12:58:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 12:58:08] Checking for apptainer binary...
[2025-12-16 12:58:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 12:58:08] Running /usr/bin/apptainer --version
[2025-12-16 12:58:08] apptainer version 1.3.2-1.el7
[2025-12-16 12:58:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 12:58:22] cg-vwn396.simple-grid.lan
[2025-12-16 12:58:22] apptainer works
[2025-12-16 12:58:22] Set ATHENA_PROC_NUMBER=8
[2025-12-16 12:58:22] Set ATHENA_CORE_NUMBER=8
[2025-12-16 12:58:22] Starting ATLAS job with PandaID=6929808150
[2025-12-16 12:58:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 17:22:25]  *** The last 200 lines of the pilot log: ***
[2025-12-16 17:22:25] 2025-12-16 16:21:41,046 | INFO     | fitting pss+swap vs Time
[2025-12-16 17:22:25] 2025-12-16 16:21:41,046 | INFO     | sum of square deviations: 4729621702.0
[2025-12-16 17:22:25] 2025-12-16 16:21:41,057 | INFO     | sum of deviations: 83546689887.00002
[2025-12-16 17:22:25] 2025-12-16 16:21:41,057 | INFO     | mean x: 1765894488.5
[2025-12-16 17:22:25] 2025-12-16 16:21:41,057 | INFO     | mean y: 2443589.314516129
[2025-12-16 17:22:25] 2025-12-16 16:21:41,057 | INFO     | intersect: -31191306883.685154
[2025-12-16 17:22:25] 2025-12-16 16:21:41,058 | INFO     | chi2: 3.978564213148875
[2025-12-16 17:22:25] 2025-12-16 16:21:41,058 | INFO     | sum of square deviations: 4449281562.0
[2025-12-16 17:22:25] 2025-12-16 16:21:41,060 | INFO     | sum of deviations: 81713550399.99998
[2025-12-16 17:22:25] 2025-12-16 16:21:41,061 | INFO     | mean x: 1765894336.0
[2025-12-16 17:22:25] 2025-12-16 16:21:41,061 | INFO     | mean y: 2442593.526748971
[2025-12-16 17:22:25] 2025-12-16 16:21:41,061 | INFO     | intersect: -32429196945.362587
[2025-12-16 17:22:25] 2025-12-16 16:21:41,061 | INFO     | chi2: 3.9823142521145747
[2025-12-16 17:22:25] 2025-12-16 16:21:41,061 | INFO     | current chi2=3.9823142521145747 (change=-0.09425608749272119 %)
[2025-12-16 17:22:25] 2025-12-16 16:21:41,062 | INFO     | right removable region: 242
[2025-12-16 17:22:25] 2025-12-16 16:21:41,062 | INFO     | sum of square deviations: 4449281562.0
[2025-12-16 17:22:25] 2025-12-16 16:21:41,064 | INFO     | sum of deviations: 7675515258.999999
[2025-12-16 17:22:25] 2025-12-16 16:21:41,065 | INFO     | mean x: 1765894641.0
[2025-12-16 17:22:25] 2025-12-16 16:21:41,065 | INFO     | mean y: 2484774.9794238685
[2025-12-16 17:22:25] 2025-12-16 16:21:41,065 | INFO     | intersect: -3043883739.556457
[2025-12-16 17:22:25] 2025-12-16 16:21:41,065 | INFO     | chi2: 0.2584492557512488
[2025-12-16 17:22:25] 2025-12-16 16:21:41,066 | INFO     | current chi2=0.2584492557512488 (change=93.50395665609487 %)
[2025-12-16 17:22:25] 2025-12-16 16:21:41,072 | INFO     | sum of square deviations: 4180243959.5
[2025-12-16 17:22:25] 2025-12-16 16:21:41,074 | INFO     | sum of deviations: -10235348904.999998
[2025-12-16 17:22:25] 2025-12-16 16:21:41,074 | INFO     | mean x: 1765894793.5
[2025-12-16 17:22:25] 2025-12-16 16:21:41,074 | INFO     | mean y: 2494883.1596638653
[2025-12-16 17:22:25] 2025-12-16 16:21:41,074 | INFO     | intersect: 4326297397.106081
[2025-12-16 17:22:25] 2025-12-16 16:21:41,074 | INFO     | chi2: 0.03145755159689828
[2025-12-16 17:22:25] 2025-12-16 16:21:41,075 | INFO     | current chi2=0.03145755159689828 (change=87.82834506315027 %)
[2025-12-16 17:22:25] 2025-12-16 16:21:41,075 | INFO     | sum of square deviations: 3922276332.0
[2025-12-16 17:22:25] 2025-12-16 16:21:41,077 | INFO     | sum of deviations: -12718689161.000004
[2025-12-16 17:22:25] 2025-12-16 16:21:41,077 | INFO     | mean x: 1765894946.0
[2025-12-16 17:22:25] 2025-12-16 16:21:41,077 | INFO     | mean y: 2496328.738197425
[2025-12-16 17:22:25] 2025-12-16 16:21:41,077 | INFO     | intersect: 5728729517.84714
[2025-12-16 17:22:25] 2025-12-16 16:21:41,078 | INFO     | chi2: 0.014538051121086481
[2025-12-16 17:22:25] 2025-12-16 16:21:41,078 | INFO     | current chi2=0.014538051121086481 (change=53.78517912843562 %)
[2025-12-16 17:22:25] 2025-12-16 16:21:41,078 | INFO     | sum of square deviations: 3675146117.0
[2025-12-16 17:22:25] 2025-12-16 16:21:41,080 | INFO     | sum of deviations: -12103699361.0
[2025-12-16 17:22:25] 2025-12-16 16:21:41,080 | INFO     | mean x: 1765895098.5
[2025-12-16 17:22:25] 2025-12-16 16:21:41,080 | INFO     | mean y: 2495947.1578947366
[2025-12-16 17:22:25] 2025-12-16 16:21:41,080 | INFO     | intersect: 5818281958.070255
[2025-12-16 17:22:25] 2025-12-16 16:21:41,071 | INFO     | monitor loop #1111: job 0:6929808150 is in state 'finished'
[2025-12-16 17:22:25] 2025-12-16 16:21:41,081 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 17:22:25] 2025-12-16 16:21:41,081 | INFO     | chi2: 0.014463867941620936
[2025-12-16 17:22:25] 2025-12-16 16:21:41,081 | INFO     | current chi2=0.014463867941620936 (change=0.5102690783494859 %)
[2025-12-16 17:22:25] 2025-12-16 16:21:41,081 | INFO     | left removable region: 40
[2025-12-16 17:22:25] 2025-12-16 16:21:41,082 | INFO     | sum of square deviations: 2555770710.5
[2025-12-16 17:22:25] 2025-12-16 16:21:41,083 | INFO     | sum of deviations: -6426276738.999999
[2025-12-16 17:22:25] 2025-12-16 16:21:41,084 | INFO     | mean x: 1765895525.5
[2025-12-16 17:22:25] 2025-12-16 16:21:41,084 | INFO     | mean y: 2492062.2772277226
[2025-12-16 17:22:25] 2025-12-16 16:21:41,084 | INFO     | intersect: 4442692152.372449
[2025-12-16 17:22:25] 2025-12-16 16:21:41,084 | INFO     | chi2: 0.012387453024464751
[2025-12-16 17:22:25] 2025-12-16 16:21:41,085 | INFO     | current memory leak: -2.51 B/s (using 202 data points, chi2=0.01)
[2025-12-16 17:22:25] 2025-12-16 16:21:41,085 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2025-12-16 17:22:25] 2025-12-16 16:21:41,085 | INFO     | ..............................
[2025-12-16 17:22:25] 2025-12-16 16:21:41,086 | INFO     | . Timing measurements:
[2025-12-16 17:22:25] 2025-12-16 16:21:41,086 | INFO     | . get job = 0 s
[2025-12-16 17:22:25] 2025-12-16 16:21:41,086 | INFO     | . initial setup = 8 s
[2025-12-16 17:22:25] 2025-12-16 16:21:41,086 | INFO     | . payload setup = 128 s
[2025-12-16 17:22:25] 2025-12-16 16:21:41,086 | INFO     | . stage-in = 0 s
[2025-12-16 17:22:25] 2025-12-16 16:21:41,086 | INFO     | . payload execution = 15251 s
[2025-12-16 17:22:25] 2025-12-16 16:21:41,086 | INFO     | . stage-out = 2 s
[2025-12-16 17:22:25] 2025-12-16 16:21:41,086 | INFO     | . log creation = 0 s
[2025-12-16 17:22:25] 2025-12-16 16:21:41,086 | INFO     | ..............................
[2025-12-16 17:22:25] 2025-12-16 16:21:41,226 | INFO     | 
[2025-12-16 17:22:25] 2025-12-16 16:21:41,226 | INFO     | job summary report
[2025-12-16 17:22:25] 2025-12-16 16:21:41,227 | INFO     | --------------------------------------------------
[2025-12-16 17:22:25] 2025-12-16 16:21:41,227 | INFO     | PanDA job id: 6929808150
[2025-12-16 17:22:25] 2025-12-16 16:21:41,227 | INFO     | task id: 47886831
[2025-12-16 17:22:25] 2025-12-16 16:21:41,227 | INFO     | errors: (none)
[2025-12-16 17:22:25] 2025-12-16 16:21:41,227 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 17:22:25] 2025-12-16 16:21:41,227 | INFO     | pilot state: finished 
[2025-12-16 17:22:25] 2025-12-16 16:21:41,227 | INFO     | transexitcode: 0
[2025-12-16 17:22:25] 2025-12-16 16:21:41,227 | INFO     | exeerrorcode: 0
[2025-12-16 17:22:25] 2025-12-16 16:21:41,227 | INFO     | exeerrordiag: 
[2025-12-16 17:22:25] 2025-12-16 16:21:41,227 | INFO     | exitcode: 0
[2025-12-16 17:22:25] 2025-12-16 16:21:41,227 | INFO     | exitmsg: OK
[2025-12-16 17:22:25] 2025-12-16 16:21:41,227 | INFO     | cpuconsumptiontime: 57807 s
[2025-12-16 17:22:25] 2025-12-16 16:21:41,228 | INFO     | nevents: 400
[2025-12-16 17:22:25] 2025-12-16 16:21:41,228 | INFO     | neventsw: 0
[2025-12-16 17:22:25] 2025-12-16 16:21:41,228 | INFO     | pid: 23601
[2025-12-16 17:22:25] 2025-12-16 16:21:41,228 | INFO     | pgrp: 23601
[2025-12-16 17:22:25] 2025-12-16 16:21:41,228 | INFO     | corecount: 8
[2025-12-16 17:22:25] 2025-12-16 16:21:41,228 | INFO     | event service: False
[2025-12-16 17:22:25] 2025-12-16 16:21:41,228 | INFO     | sizes: {0: 2283762, 1: 2284017, 12: 2284017, 23: 2284045, 34: 2284073, 44: 2284101, 55: 2284257, 66: 2284285, 76: 2284313, 83: 2284631, 87: 2284687, 15383: 2315406
[2025-12-16 17:22:25] 2025-12-16 16:21:41,228 | INFO     | --------------------------------------------------
[2025-12-16 17:22:25] 2025-12-16 16:21:41,228 | INFO     | 
[2025-12-16 17:22:25] 2025-12-16 16:21:41,228 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-12-16 17:22:25] 2025-12-16 16:21:41,391 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 17:22:25] 2025-12-16 16:21:41,392 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 17:22:25] 2025-12-16 16:21:41,392 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 17:22:25] 2025-12-16 16:21:41,392 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 17:22:25] 2025-12-16 16:21:41,392 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 17:22:25] 2025-12-16 16:21:41,392 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 17:22:25] 2025-12-16 16:21:41,392 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 17:22:25] 2025-12-16 16:21:41,392 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 17:22:25] 2025-12-16 16:21:41,392 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 17:22:25] 2025-12-16 16:21:41,392 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 17:22:25] 2025-12-16 16:21:41,392 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 17:22:25] 2025-12-16 16:21:41,393 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 17:22:25] 2025-12-16 16:21:41,393 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 17:22:25] 2025-12-16 16:21:41,393 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 17:22:25] 2025-12-16 16:21:41,393 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 17:22:25] 2025-12-16 16:21:41,393 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 17:22:25] 2025-12-16 16:21:41,393 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 17:22:25] 2025-12-16 16:21:41,393 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 17:22:25] 2025-12-16 16:21:41,393 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 17:22:25] 2025-12-16 16:21:41,393 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 17:22:25] 2025-12-16 16:21:41,394 | INFO     | job 6929808150 has completed (purged errors)
[2025-12-16 17:22:25] 2025-12-16 16:21:41,394 | INFO     | overall cleanup function is called
[2025-12-16 17:22:25] 2025-12-16 16:21:42,403 | INFO     | --- collectZombieJob: --- 10, [23601]
[2025-12-16 17:22:25] 2025-12-16 16:21:42,403 | INFO     | zombie collector waiting for pid 23601
[2025-12-16 17:22:25] 2025-12-16 16:21:42,403 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 17:22:25] 2025-12-16 16:21:42,403 | INFO     | collected zombie processes
[2025-12-16 17:22:25] 2025-12-16 16:21:42,404 | INFO     | will attempt to kill all subprocesses of pid=23601
[2025-12-16 17:22:25] 2025-12-16 16:21:42,510 | INFO     | process IDs to be killed: [23601] (in reverse order)
[2025-12-16 17:22:25] 2025-12-16 16:21:43,181 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 17:22:25] 2025-12-16 16:21:43,182 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 17:22:25] 2025-12-16 16:21:43,185 | INFO     | did not find any defunct processes belonging to 23601
[2025-12-16 17:22:25] 2025-12-16 16:21:43,188 | INFO     | did not find any defunct processes belonging to 23601
[2025-12-16 17:22:25] 2025-12-16 16:21:43,188 | INFO     | ready for new job
[2025-12-16 17:22:25] 2025-12-16 16:21:43,188 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 17:22:25] 2025-12-16 16:21:43,190 | INFO     | ***************************************
[2025-12-16 17:22:25] 2025-12-16 16:21:43,191 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 17:22:25] 2025-12-16 16:21:43,191 | INFO     | ***************************************
[2025-12-16 17:22:25] 2025-12-16 16:21:43,191 | INFO     | 
[2025-12-16 17:22:25] 2025-12-16 16:21:43,191 | INFO     | pilot is running in a VM
[2025-12-16 17:22:25] 2025-12-16 16:21:43,192 | INFO     | architecture information:
[2025-12-16 17:22:25] 2025-12-16 16:21:43,193 | INFO     | executing command: cat /etc/os-release
[2025-12-16 17:22:25] 2025-12-16 16:21:43,480 | INFO     | cat /etc/os-release:
[2025-12-16 17:22:25] NAME="CentOS Linux"
[2025-12-16 17:22:25] VERSION="7 (Core)"
[2025-12-16 17:22:25] ID="centos"
[2025-12-16 17:22:25] ID_LIKE="rhel fedora"
[2025-12-16 17:22:25] VERSION_ID="7"
[2025-12-16 17:22:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 17:22:25] ANSI_COLOR="0;31"
[2025-12-16 17:22:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 17:22:25] HOME_URL="https://www.centos.org/"
[2025-12-16 17:22:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 17:22:25] 
[2025-12-16 17:22:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 17:22:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 17:22:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 17:22:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 17:22:25] 
[2025-12-16 17:22:25] 2025-12-16 16:21:43,481 | INFO     | ***************************************
[2025-12-16 17:22:25] 2025-12-16 16:21:43,984 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-12-16 17:22:25] 2025-12-16 16:21:44,208 | INFO     | sufficient remaining disk space (495997419520 B)
[2025-12-16 17:22:25] 2025-12-16 16:21:44,208 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 17:22:25] 2025-12-16 16:21:44,208 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 17:22:25] 2025-12-16 16:21:44,208 | INFO     | update_server=False
[2025-12-16 17:22:25] 2025-12-16 16:21:44,208 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 17:22:25] 2025-12-16 16:21:44,209 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 17:22:25] 2025-12-16 16:21:44,213 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 17:22:25] 2025-12-16 16:21:44,433 | INFO     | all data control threads have been joined
[2025-12-16 17:22:25] 2025-12-16 16:21:44,592 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 17:22:25] 2025-12-16 16:21:44,592 | INFO     | aborting loop
[2025-12-16 17:22:25] 2025-12-16 16:21:44,622 | INFO     | all payload control threads have been joined
[2025-12-16 17:22:25] 2025-12-16 16:21:45,216 | INFO     | [job] retrieve thread has finished
[2025-12-16 17:22:25] 2025-12-16 16:21:45,366 | INFO     | [job] validate thread has finished
[2025-12-16 17:22:25] 2025-12-16 16:21:45,439 | INFO     | [data] control thread has finished
[2025-12-16 17:22:25] 2025-12-16 16:21:45,452 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 17:22:25] 2025-12-16 16:21:45,465 | INFO     | all job control threads have been joined
[2025-12-16 17:22:25] 2025-12-16 16:21:45,546 | INFO     | [data] copytool_in thread has finished
[2025-12-16 17:22:25] 2025-12-16 16:21:45,598 | INFO     | [job] job monitor thread has finished
[2025-12-16 17:22:25] 2025-12-16 16:21:45,628 | INFO     | [payload] control thread has finished
[2025-12-16 17:22:25] 2025-12-16 16:21:45,772 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 17:22:25] 2025-12-16 16:21:46,220 | INFO     | [data] copytool_out thread has finished
[2025-12-16 17:22:25] 2025-12-16 16:21:46,242 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 17:22:25] 2025-12-16 16:21:46,266 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 17:22:25] 2025-12-16 16:21:46,324 | INFO     | [payload] validate_post thread has finished
[2025-12-16 17:22:25] 2025-12-16 16:21:46,349 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 17:22:25] 2025-12-16 16:21:46,462 | INFO     | [payload] failed_post thread has finished
[2025-12-16 17:22:25] 2025-12-16 16:21:46,471 | INFO     | [job] control thread has finished
[2025-12-16 17:22:25] 2025-12-16 16:21:47,248 | INFO     | [job] queue monitor thread has finished
[2025-12-16 17:22:25] 2025-12-16 16:21:48,217 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 17:22:25] 2025-12-16 16:22:12,638 | INFO     | PID=17026 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 17:22:25] 2025-12-16 16:22:12,638 | INFO     | .. there are 9 such processes running
[2025-12-16 17:22:25] 2025-12-16 16:22:12,640 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 17:22:25] 2025-12-16 16:22:12,640 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 17:22:25] 2025-12-16 16:22:12,640 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 17:22:25] 2025-12-16 16:22:14,180 | INFO     | [monitor] cgroup control has ended
[2025-12-16 17:22:25] 2025-12-16 16:22:15,502 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139647039829824)>', '<ExcThread(monitor, started 139646164006656)>']
[2025-12-16 17:22:25] 2025-12-16 16:22:15,656 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 17:22:25] 2025-12-16 16:22:15,656 | INFO     | [monitor] control thread has ended
[2025-12-16 17:22:25] 2025-12-16 16:22:20,528 | INFO     | all workflow threads have been joined
[2025-12-16 17:22:25] 2025-12-16 16:22:20,528 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 17:22:25] 2025-12-16 16:22:20,528 | INFO     | traces error code: 0
[2025-12-16 17:22:25] 2025-12-16 16:22:20,529 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 17:22:25] 2025-12-16 16:22:20,875 [wrapper] ==== pilot stdout END ====
[2025-12-16 17:22:25] 2025-12-16 16:22:21,018 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 17:22:25] 2025-12-16 16:22:21,124 [wrapper] pilotpid: 17026
[2025-12-16 17:22:25] 2025-12-16 16:22:21,228 [wrapper] Pilot exit status: 0
[2025-12-16 17:22:25] 2025-12-16 16:22:21,711 [wrapper] pandaids: 6929808150
[2025-12-16 17:22:25] 2025-12-16 16:22:22,496 [wrapper] cleanup supervisor_pilot 32728 17027
[2025-12-16 17:22:25] 2025-12-16 16:22:22,531 [wrapper] Test setup, not cleaning
[2025-12-16 17:22:25] 2025-12-16 16:22:22,611 [wrapper] apfmon messages muted
[2025-12-16 17:22:25] 2025-12-16 16:22:22,662 [wrapper] ==== wrapper stdout END ====
[2025-12-16 17:22:25] 2025-12-16 16:22:22,721 [wrapper] ==== wrapper stderr END ====
[2025-12-16 17:22:25]  *** Error codes and diagnostics ***
[2025-12-16 17:22:25]     "exeErrorCode": 0,
[2025-12-16 17:22:25]     "exeErrorDiag": "",
[2025-12-16 17:22:25]     "pilotErrorCode": 0,
[2025-12-16 17:22:25]     "pilotErrorDiag": "",
[2025-12-16 17:22:25]  *** Listing of results directory ***
[2025-12-16 17:22:25] total 339368
[2025-12-16 17:22:25] -rw-r--r--. 1 boinc boinc    579449 Dec 15 16:52 pilot3.tar.gz
[2025-12-16 17:22:25] -rw-r--r--. 1 boinc boinc      5112 Dec 15 16:52 queuedata.json
[2025-12-16 17:22:25] -rwx------. 1 boinc boinc     36322 Dec 15 16:52 runpilot2-wrapper.sh
[2025-12-16 17:22:25] -rw-r--r--. 1 boinc boinc       100 Dec 16 12:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 17:22:25] -rwxr-xr-x. 1 boinc boinc      7986 Dec 16 12:58 run_atlas
[2025-12-16 17:22:25] -rw-r--r--. 1 boinc boinc       105 Dec 16 12:58 job.xml
[2025-12-16 17:22:25] -rw-r--r--. 1 boinc boinc      6393 Dec 16 12:58 init_data.xml
[2025-12-16 17:22:25] -rw-r--r--. 2 boinc boinc 192097704 Dec 16 12:58 EVNT.47886829._000320.pool.root.1
[2025-12-16 17:22:25] -rw-r--r--. 2 boinc boinc     15847 Dec 16 12:58 start_atlas.sh
[2025-12-16 17:22:25] drwxrwx--x. 2 boinc boinc        68 Dec 16 12:58 shared
[2025-12-16 17:22:25] -rw-r--r--. 2 boinc boinc    592410 Dec 16 12:58 input.tar.gz
[2025-12-16 17:22:25] -rw-r--r--. 1 boinc boinc         0 Dec 16 12:58 boinc_lockfile
[2025-12-16 17:22:25] -rw-r--r--. 1 boinc boinc      2537 Dec 16 12:58 pandaJob.out
[2025-12-16 17:22:25] -rw-------. 1 boinc boinc    991017 Dec 16 13:01 agis_schedconf.cvmfs.json
[2025-12-16 17:22:25] drwx------. 5 boinc boinc      4096 Dec 16 13:01 pilot3
[2025-12-16 17:22:25] -rw-------. 1 boinc boinc 146378425 Dec 16 17:20 HITS.47886831._008461.pool.root.1
[2025-12-16 17:22:25] -rw-r--r--. 1 boinc boinc       531 Dec 16 17:20 boinc_task_state.xml
[2025-12-16 17:22:25] -rw-------. 1 boinc boinc      1019 Dec 16 17:20 memory_monitor_summary.json
[2025-12-16 17:22:25] -rw-------. 1 boinc boinc   1516240 Dec 16 17:21 agis_ddmendpoints.agis.ALL.json
[2025-12-16 17:22:25] -rw-------. 1 boinc boinc    482117 Dec 16 17:21 log.47886831._008461.job.log.tgz.1
[2025-12-16 17:22:25] -rw-------. 1 boinc boinc      7776 Dec 16 17:21 heartbeat.json
[2025-12-16 17:22:25] -rw-------. 1 boinc boinc        95 Dec 16 17:22 pilot_heartbeat.json
[2025-12-16 17:22:25] -rw-r--r--. 1 boinc boinc      8192 Dec 16 17:22 boinc_mmap_file
[2025-12-16 17:22:25] -rw-r--r--. 1 boinc boinc        28 Dec 16 17:22 wrapper_checkpoint.txt
[2025-12-16 17:22:25] -rw-------. 1 boinc boinc      4884 Dec 16 17:22 pilotlog.txt
[2025-12-16 17:22:25] -rw-------. 1 boinc boinc   2087458 Dec 16 17:22 log.47886831._008461.job.log.1
[2025-12-16 17:22:25] -rw-------. 1 boinc boinc       357 Dec 16 17:22 output.list
[2025-12-16 17:22:25] -rw-r--r--. 1 boinc boinc       620 Dec 16 17:22 runtime_log
[2025-12-16 17:22:25] -rw-------. 1 boinc boinc   2590720 Dec 16 17:22 result.tar.gz
[2025-12-16 17:22:25] -rw-r--r--. 1 boinc boinc      8817 Dec 16 17:22 runtime_log.err
[2025-12-16 17:22:25] -rw-------. 1 boinc boinc       657 Dec 16 17:22 HQYLDmC3Pp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmViTKDmkG9uYm.diag
[2025-12-16 17:22:25] -rw-r--r--. 1 boinc boinc     20689 Dec 16 17:22 stderr.txt
[2025-12-16 17:22:25] HITS file was successfully produced:
[2025-12-16 17:22:25] -rw-------. 1 boinc boinc 146378425 Dec 16 17:20 shared/HITS.pool.root.1
[2025-12-16 17:22:25]  *** Contents of shared directory: ***
[2025-12-16 17:22:25] total 333672
[2025-12-16 17:22:25] -rw-r--r--. 2 boinc boinc 192097704 Dec 16 12:58 ATLAS.root_0
[2025-12-16 17:22:25] -rw-r--r--. 2 boinc boinc     15847 Dec 16 12:58 start_atlas.sh
[2025-12-16 17:22:25] -rw-r--r--. 2 boinc boinc    592410 Dec 16 12:58 input.tar.gz
[2025-12-16 17:22:25] -rw-------. 1 boinc boinc 146378425 Dec 16 17:20 HITS.pool.root.1
[2025-12-16 17:22:25] -rw-------. 1 boinc boinc   2590720 Dec 16 17:22 result.tar.gz
17:22:27 (13178): run_atlas exited; CPU time 58034.193817
17:22:27 (13178): called boinc_finish(0)

</stderr_txt>
]]>

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