Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:07:03 (20234): wrapper (7.7.26015): starting
13:07:03 (20234): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 13:07:04] Arguments: --nthreads 8
[2025-12-16 13:07:04] Threads: 8
[2025-12-16 13:07:04] Checking for CVMFS
[2025-12-16 13:07:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 13:07:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 13:07:05] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 13:07:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 13:07:07] 2.11.2.0 4021 816 55660 154069 1 60 24742968 25165824 4712 130560 0 665162 99.989 123946 2846 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-16 13:07:07] CVMFS is ok
[2025-12-16 13:07:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 13:07:07] Checking for apptainer binary...
[2025-12-16 13:07:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 13:07:07] Running /usr/bin/apptainer --version
[2025-12-16 13:07:07] apptainer version 1.3.2-1.el7
[2025-12-16 13:07:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 13:07:22] cg-vwn448.simple-grid.lan
[2025-12-16 13:07:22] apptainer works
[2025-12-16 13:07:22] Set ATHENA_PROC_NUMBER=8
[2025-12-16 13:07:22] Set ATHENA_CORE_NUMBER=8
[2025-12-16 13:07:22] Starting ATLAS job with PandaID=6930228573
[2025-12-16 13:07:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/25 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 19:24:54]  *** The last 200 lines of the pilot log: ***
[2025-12-16 19:24:54] 2025-12-16 18:24:13,783 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 19:24:54] 2025-12-16 18:24:15,717 | INFO     | time since job start (22395s) is within the limit (174528.0s)
[2025-12-16 19:24:54] 2025-12-16 18:24:16,288 | INFO     | monitor loop #1587: job 0:6930228573 is in state 'finished'
[2025-12-16 19:24:54] 2025-12-16 18:24:16,288 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 19:24:54] 2025-12-16 18:24:16,934 | INFO     | PID=24046 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 19:24:54] 2025-12-16 18:24:16,935 | INFO     | .. there are 9 such processes running
[2025-12-16 19:24:54] 2025-12-16 18:24:17,259 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 19:24:54] 2025-12-16 18:24:17,260 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-16 19:24:54] 2025-12-16 18:24:17,262 | INFO     | using path: /var/lib/boinc/slots/25/PanDA_Pilot-6930228573/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 19:24:54] 2025-12-16 18:24:17,262 | INFO     | extracted standard info from prmon json
[2025-12-16 19:24:54] 2025-12-16 18:24:17,263 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 19:24:54] 2025-12-16 18:24:17,263 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 19:24:54] 2025-12-16 18:24:17,263 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 19:24:54] 2025-12-16 18:24:17,263 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 19:24:54] 2025-12-16 18:24:17,270 | INFO     | fitting pss+swap vs Time
[2025-12-16 19:24:54] 2025-12-16 18:24:17,271 | INFO     | sum of square deviations: 14227353269.5
[2025-12-16 19:24:54] 2025-12-16 18:24:17,275 | INFO     | sum of deviations: 17533321378.000008
[2025-12-16 19:24:54] 2025-12-16 18:24:17,275 | INFO     | mean x: 1765898410.5
[2025-12-16 19:24:54] 2025-12-16 18:24:17,275 | INFO     | mean y: 2491494.7318435754
[2025-12-16 19:24:54] 2025-12-16 18:24:17,275 | INFO     | intersect: -2173743520.010572
[2025-12-16 19:24:54] 2025-12-16 18:24:17,283 | INFO     | chi2: 5.308164237024258
[2025-12-16 19:24:54] 2025-12-16 18:24:17,284 | INFO     | sum of square deviations: 13639518992.0
[2025-12-16 19:24:54] 2025-12-16 18:24:17,288 | INFO     | sum of deviations: 41505621708.00001
[2025-12-16 19:24:54] 2025-12-16 18:24:17,288 | INFO     | mean x: 1765898258.0
[2025-12-16 19:24:54] 2025-12-16 18:24:17,288 | INFO     | mean y: 2497642.818696884
[2025-12-16 19:24:54] 2025-12-16 18:24:17,288 | INFO     | intersect: -5371203960.174327
[2025-12-16 19:24:54] 2025-12-16 18:24:17,289 | INFO     | chi2: 4.535840151540657
[2025-12-16 19:24:54] 2025-12-16 18:24:17,289 | INFO     | current chi2=4.535840151540657 (change=14.549739815823099 %)
[2025-12-16 19:24:54] 2025-12-16 18:24:17,289 | INFO     | right removable region: 352
[2025-12-16 19:24:54] 2025-12-16 18:24:17,290 | INFO     | sum of square deviations: 13639518992.0
[2025-12-16 19:24:54] 2025-12-16 18:24:17,294 | INFO     | sum of deviations: -96817998788.00003
[2025-12-16 19:24:54] 2025-12-16 18:24:17,294 | INFO     | mean x: 1765898563.0
[2025-12-16 19:24:54] 2025-12-16 18:24:17,294 | INFO     | mean y: 2521125.0821529743
[2025-12-16 19:24:54] 2025-12-16 18:24:17,294 | INFO     | intersect: 12537476722.309933
[2025-12-16 19:24:54] 2025-12-16 18:24:17,295 | INFO     | chi2: 1.4729817989429275
[2025-12-16 19:24:54] 2025-12-16 18:24:17,295 | INFO     | current chi2=1.4729817989429275 (change=72.25063631850477 %)
[2025-12-16 19:24:54] 2025-12-16 18:24:17,295 | INFO     | sum of square deviations: 13068103627.0
[2025-12-16 19:24:54] 2025-12-16 18:24:17,299 | INFO     | sum of deviations: -122128039061.0
[2025-12-16 19:24:54] 2025-12-16 18:24:17,307 | INFO     | mean x: 1765898715.5
[2025-12-16 19:24:54] 2025-12-16 18:24:17,307 | INFO     | mean y: 2527836.3505747127
[2025-12-16 19:24:54] 2025-12-16 18:24:17,307 | INFO     | intersect: 16505744635.057838
[2025-12-16 19:24:54] 2025-12-16 18:24:17,308 | INFO     | chi2: 1.119211058227432
[2025-12-16 19:24:54] 2025-12-16 18:24:17,308 | INFO     | current chi2=1.119211058227432 (change=24.017319220738234 %)
[2025-12-16 19:24:54] 2025-12-16 18:24:17,308 | INFO     | left removable region: 20
[2025-12-16 19:24:54] 2025-12-16 18:24:17,309 | INFO     | sum of square deviations: 11347200663.0
[2025-12-16 19:24:54] 2025-12-16 18:24:17,312 | INFO     | sum of deviations: -77342747869.50002
[2025-12-16 19:24:54] 2025-12-16 18:24:17,313 | INFO     | mean x: 1765898837.5
[2025-12-16 19:24:54] 2025-12-16 18:24:17,313 | INFO     | mean y: 2529194.623493976
[2025-12-16 19:24:54] 2025-12-16 18:24:17,313 | INFO     | intersect: 12038931176.757515
[2025-12-16 19:24:54] 2025-12-16 18:24:17,313 | INFO     | chi2: 0.2863493748360936
[2025-12-16 19:24:54] 2025-12-16 18:24:17,314 | INFO     | current memory leak: -6.82 B/s (using 332 data points, chi2=0.29)
[2025-12-16 19:24:54] 2025-12-16 18:24:17,314 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2025-12-16 19:24:54] 2025-12-16 18:24:17,314 | INFO     | ..............................
[2025-12-16 19:24:54] 2025-12-16 18:24:17,315 | INFO     | . Timing measurements:
[2025-12-16 19:24:54] 2025-12-16 18:24:17,315 | INFO     | . get job = 0 s
[2025-12-16 19:24:54] 2025-12-16 18:24:17,315 | INFO     | . initial setup = 8 s
[2025-12-16 19:24:54] 2025-12-16 18:24:17,315 | INFO     | . payload setup = 128 s
[2025-12-16 19:24:54] 2025-12-16 18:24:17,315 | INFO     | . stage-in = 0 s
[2025-12-16 19:24:54] 2025-12-16 18:24:17,315 | INFO     | . payload execution = 21980 s
[2025-12-16 19:24:54] 2025-12-16 18:24:17,315 | INFO     | . stage-out = 3 s
[2025-12-16 19:24:54] 2025-12-16 18:24:17,315 | INFO     | . log creation = 1 s
[2025-12-16 19:24:54] 2025-12-16 18:24:17,315 | INFO     | ..............................
[2025-12-16 19:24:54] 2025-12-16 18:24:17,439 | INFO     | 
[2025-12-16 19:24:54] 2025-12-16 18:24:17,439 | INFO     | job summary report
[2025-12-16 19:24:54] 2025-12-16 18:24:17,439 | INFO     | --------------------------------------------------
[2025-12-16 19:24:54] 2025-12-16 18:24:17,440 | INFO     | PanDA job id: 6930228573
[2025-12-16 19:24:54] 2025-12-16 18:24:17,440 | INFO     | task id: 47898782
[2025-12-16 19:24:54] 2025-12-16 18:24:17,440 | INFO     | errors: (none)
[2025-12-16 19:24:54] 2025-12-16 18:24:17,440 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 19:24:54] 2025-12-16 18:24:17,440 | INFO     | pilot state: finished 
[2025-12-16 19:24:54] 2025-12-16 18:24:17,440 | INFO     | transexitcode: 0
[2025-12-16 19:24:54] 2025-12-16 18:24:17,440 | INFO     | exeerrorcode: 0
[2025-12-16 19:24:54] 2025-12-16 18:24:17,440 | INFO     | exeerrordiag: 
[2025-12-16 19:24:54] 2025-12-16 18:24:17,440 | INFO     | exitcode: 0
[2025-12-16 19:24:54] 2025-12-16 18:24:17,440 | INFO     | exitmsg: OK
[2025-12-16 19:24:54] 2025-12-16 18:24:17,441 | INFO     | cpuconsumptiontime: 83037 s
[2025-12-16 19:24:54] 2025-12-16 18:24:17,441 | INFO     | nevents: 400
[2025-12-16 19:24:54] 2025-12-16 18:24:17,441 | INFO     | neventsw: 0
[2025-12-16 19:24:54] 2025-12-16 18:24:17,441 | INFO     | pid: 30644
[2025-12-16 19:24:54] 2025-12-16 18:24:17,441 | INFO     | pgrp: 30644
[2025-12-16 19:24:54] 2025-12-16 18:24:17,441 | INFO     | corecount: 8
[2025-12-16 19:24:54] 2025-12-16 18:24:17,441 | INFO     | event service: False
[2025-12-16 19:24:54] 2025-12-16 18:24:17,441 | INFO     | sizes: {0: 2283754, 1: 2284009, 12: 2284009, 23: 2284037, 33: 2284065, 44: 2284121, 55: 2284277, 66: 2284305, 76: 2284333, 87: 2284389, 92: 2284679, 98: 2284987, 2
[2025-12-16 19:24:54] 2025-12-16 18:24:17,441 | INFO     | --------------------------------------------------
[2025-12-16 19:24:54] 2025-12-16 18:24:17,441 | INFO     | 
[2025-12-16 19:24:54] 2025-12-16 18:24:17,441 | INFO     | executing command: ls -lF /var/lib/boinc/slots/25
[2025-12-16 19:24:54] 2025-12-16 18:24:17,942 | INFO     | time since job start (22397s) is within the limit (174528.0s)
[2025-12-16 19:24:54] 2025-12-16 18:24:17,963 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 19:24:54] 2025-12-16 18:24:17,963 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 19:24:54] 2025-12-16 18:24:17,964 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 19:24:54] 2025-12-16 18:24:17,964 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 19:24:54] 2025-12-16 18:24:17,964 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 19:24:54] 2025-12-16 18:24:17,964 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 19:24:54] 2025-12-16 18:24:17,964 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 19:24:54] 2025-12-16 18:24:17,964 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 19:24:54] 2025-12-16 18:24:17,964 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 19:24:54] 2025-12-16 18:24:17,964 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 19:24:54] 2025-12-16 18:24:17,965 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 19:24:54] 2025-12-16 18:24:17,965 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 19:24:54] 2025-12-16 18:24:17,965 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 19:24:54] 2025-12-16 18:24:17,965 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 19:24:54] 2025-12-16 18:24:17,965 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 19:24:54] 2025-12-16 18:24:17,965 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 19:24:54] 2025-12-16 18:24:17,965 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 19:24:54] 2025-12-16 18:24:17,965 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 19:24:54] 2025-12-16 18:24:17,966 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 19:24:54] 2025-12-16 18:24:17,966 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 19:24:54] 2025-12-16 18:24:17,966 | INFO     | job 6930228573 has completed (purged errors)
[2025-12-16 19:24:54] 2025-12-16 18:24:17,966 | INFO     | overall cleanup function is called
[2025-12-16 19:24:54] 2025-12-16 18:24:18,975 | INFO     | --- collectZombieJob: --- 10, [30644]
[2025-12-16 19:24:54] 2025-12-16 18:24:18,975 | INFO     | zombie collector waiting for pid 30644
[2025-12-16 19:24:54] 2025-12-16 18:24:18,975 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 19:24:54] 2025-12-16 18:24:18,975 | INFO     | collected zombie processes
[2025-12-16 19:24:54] 2025-12-16 18:24:18,975 | INFO     | will attempt to kill all subprocesses of pid=30644
[2025-12-16 19:24:54] 2025-12-16 18:24:19,106 | INFO     | process IDs to be killed: [30644] (in reverse order)
[2025-12-16 19:24:54] 2025-12-16 18:24:19,727 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 19:24:54] 2025-12-16 18:24:19,728 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 19:24:54] 2025-12-16 18:24:19,731 | INFO     | did not find any defunct processes belonging to 30644
[2025-12-16 19:24:54] 2025-12-16 18:24:19,734 | INFO     | did not find any defunct processes belonging to 30644
[2025-12-16 19:24:54] 2025-12-16 18:24:19,734 | INFO     | ready for new job
[2025-12-16 19:24:54] 2025-12-16 18:24:19,735 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 19:24:54] 2025-12-16 18:24:19,742 | INFO     | ***************************************
[2025-12-16 19:24:54] 2025-12-16 18:24:19,743 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 19:24:54] 2025-12-16 18:24:19,743 | INFO     | ***************************************
[2025-12-16 19:24:54] 2025-12-16 18:24:19,743 | INFO     | 
[2025-12-16 19:24:54] 2025-12-16 18:24:19,743 | INFO     | pilot is running in a VM
[2025-12-16 19:24:54] 2025-12-16 18:24:19,744 | INFO     | architecture information:
[2025-12-16 19:24:54] 2025-12-16 18:24:19,755 | INFO     | executing command: cat /etc/os-release
[2025-12-16 19:24:54] 2025-12-16 18:24:20,017 | INFO     | cat /etc/os-release:
[2025-12-16 19:24:54] NAME="CentOS Linux"
[2025-12-16 19:24:54] VERSION="7 (Core)"
[2025-12-16 19:24:54] ID="centos"
[2025-12-16 19:24:54] ID_LIKE="rhel fedora"
[2025-12-16 19:24:54] VERSION_ID="7"
[2025-12-16 19:24:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 19:24:54] ANSI_COLOR="0;31"
[2025-12-16 19:24:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 19:24:54] HOME_URL="https://www.centos.org/"
[2025-12-16 19:24:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 19:24:54] 
[2025-12-16 19:24:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 19:24:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 19:24:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 19:24:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 19:24:54] 
[2025-12-16 19:24:54] 2025-12-16 18:24:20,018 | INFO     | ***************************************
[2025-12-16 19:24:54] 2025-12-16 18:24:20,521 | INFO     | executing command: df -mP /var/lib/boinc/slots/25
[2025-12-16 19:24:54] 2025-12-16 18:24:20,661 | INFO     | sufficient remaining disk space (495878930432 B)
[2025-12-16 19:24:54] 2025-12-16 18:24:20,661 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 19:24:54] 2025-12-16 18:24:20,661 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 19:24:54] 2025-12-16 18:24:20,661 | INFO     | update_server=False
[2025-12-16 19:24:54] 2025-12-16 18:24:20,661 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 19:24:54] 2025-12-16 18:24:20,663 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 19:24:54] 2025-12-16 18:24:20,668 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 19:24:54] 2025-12-16 18:24:20,668 | INFO     | aborting loop
[2025-12-16 19:24:54] 2025-12-16 18:24:20,909 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 19:24:54] 2025-12-16 18:24:21,068 | INFO     | all data control threads have been joined
[2025-12-16 19:24:54] 2025-12-16 18:24:21,274 | INFO     | all job control threads have been joined
[2025-12-16 19:24:54] 2025-12-16 18:24:21,414 | INFO     | all payload control threads have been joined
[2025-12-16 19:24:54] 2025-12-16 18:24:21,668 | INFO     | [job] retrieve thread has finished
[2025-12-16 19:24:54] 2025-12-16 18:24:21,674 | INFO     | [job] job monitor thread has finished
[2025-12-16 19:24:54] 2025-12-16 18:24:21,714 | INFO     | [payload] validate_post thread has finished
[2025-12-16 19:24:54] 2025-12-16 18:24:21,888 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 19:24:54] 2025-12-16 18:24:22,074 | INFO     | [data] control thread has finished
[2025-12-16 19:24:54] 2025-12-16 18:24:22,280 | INFO     | [job] control thread has finished
[2025-12-16 19:24:54] 2025-12-16 18:24:22,360 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 19:24:54] 2025-12-16 18:24:22,420 | INFO     | [payload] control thread has finished
[2025-12-16 19:24:54] 2025-12-16 18:24:22,454 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 19:24:54] 2025-12-16 18:24:22,581 | INFO     | [data] copytool_in thread has finished
[2025-12-16 19:24:54] 2025-12-16 18:24:22,670 | INFO     | [data] copytool_out thread has finished
[2025-12-16 19:24:54] 2025-12-16 18:24:22,710 | INFO     | [job] validate thread has finished
[2025-12-16 19:24:54] 2025-12-16 18:24:22,725 | INFO     | [payload] failed_post thread has finished
[2025-12-16 19:24:54] 2025-12-16 18:24:22,763 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 19:24:54] 2025-12-16 18:24:23,460 | INFO     | [job] queue monitor thread has finished
[2025-12-16 19:24:54] 2025-12-16 18:24:24,918 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 19:24:54] 2025-12-16 18:24:31,523 | INFO     | job.realtimelogging is not enabled
[2025-12-16 19:24:54] 2025-12-16 18:24:32,529 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 19:24:54] 2025-12-16 18:24:38,356 | INFO     | [monitor] cgroup control has ended
[2025-12-16 19:24:54] 2025-12-16 18:24:39,880 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139937753913152)>', '<ExcThread(monitor, started 139937315796736)>']
[2025-12-16 19:24:54] 2025-12-16 18:24:44,906 | INFO     | all workflow threads have been joined
[2025-12-16 19:24:54] 2025-12-16 18:24:44,906 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 19:24:54] 2025-12-16 18:24:44,906 | INFO     | traces error code: 0
[2025-12-16 19:24:54] 2025-12-16 18:24:44,906 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 19:24:54] 2025-12-16 18:24:51,124 | INFO     | PID=24046 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 19:24:54] 2025-12-16 18:24:51,124 | INFO     | .. there are 9 such processes running
[2025-12-16 19:24:54] 2025-12-16 18:24:51,125 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 19:24:54] 2025-12-16 18:24:51,126 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 19:24:54] 2025-12-16 18:24:51,126 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 19:24:54] 2025-12-16 18:24:51,126 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 19:24:54] 2025-12-16 18:24:51,126 | INFO     | [monitor] control thread has ended
[2025-12-16 19:24:54] 2025-12-16 18:24:51,342 [wrapper] ==== pilot stdout END ====
[2025-12-16 19:24:54] 2025-12-16 18:24:51,353 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 19:24:54] 2025-12-16 18:24:51,369 [wrapper] pilotpid: 24046
[2025-12-16 19:24:54] 2025-12-16 18:24:51,379 [wrapper] Pilot exit status: 0
[2025-12-16 19:24:54] 2025-12-16 18:24:51,483 [wrapper] pandaids: 6930228573
[2025-12-16 19:24:54] 2025-12-16 18:24:51,656 [wrapper] cleanup supervisor_pilot  3694 24047
[2025-12-16 19:24:54] 2025-12-16 18:24:51,750 [wrapper] Test setup, not cleaning
[2025-12-16 19:24:54] 2025-12-16 18:24:51,814 [wrapper] apfmon messages muted
[2025-12-16 19:24:54] 2025-12-16 18:24:51,867 [wrapper] ==== wrapper stdout END ====
[2025-12-16 19:24:54] 2025-12-16 18:24:51,988 [wrapper] ==== wrapper stderr END ====
[2025-12-16 19:24:54]  *** Error codes and diagnostics ***
[2025-12-16 19:24:54]     "exeErrorCode": 0,
[2025-12-16 19:24:54]     "exeErrorDiag": "",
[2025-12-16 19:24:54]     "pilotErrorCode": 0,
[2025-12-16 19:24:54]     "pilotErrorDiag": "",
[2025-12-16 19:24:54]  *** Listing of results directory ***
[2025-12-16 19:24:54] total 419724
[2025-12-16 19:24:54] -rw-r--r--. 1 boinc boinc    579449 Dec 16 03:06 pilot3.tar.gz
[2025-12-16 19:24:54] -rwx------. 1 boinc boinc     36322 Dec 16 03:06 runpilot2-wrapper.sh
[2025-12-16 19:24:54] -rw-r--r--. 1 boinc boinc      5112 Dec 16 03:07 queuedata.json
[2025-12-16 19:24:54] -rw-r--r--. 1 boinc boinc       100 Dec 16 13:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 19:24:54] -rwxr-xr-x. 1 boinc boinc      7986 Dec 16 13:07 run_atlas
[2025-12-16 19:24:54] -rw-r--r--. 1 boinc boinc       105 Dec 16 13:07 job.xml
[2025-12-16 19:24:54] -rw-r--r--. 2 boinc boinc 214253338 Dec 16 13:07 EVNT.47898779._000178.pool.root.1
[2025-12-16 19:24:54] -rw-r--r--. 1 boinc boinc      6393 Dec 16 13:07 init_data.xml
[2025-12-16 19:24:54] -rw-r--r--. 2 boinc boinc     15847 Dec 16 13:07 start_atlas.sh
[2025-12-16 19:24:54] drwxrwx--x. 2 boinc boinc        68 Dec 16 13:07 shared
[2025-12-16 19:24:54] -rw-r--r--. 2 boinc boinc    592395 Dec 16 13:07 input.tar.gz
[2025-12-16 19:24:54] -rw-r--r--. 1 boinc boinc         0 Dec 16 13:07 boinc_lockfile
[2025-12-16 19:24:54] -rw-r--r--. 1 boinc boinc      2522 Dec 16 13:07 pandaJob.out
[2025-12-16 19:24:54] -rw-------. 1 boinc boinc    991017 Dec 16 13:10 agis_schedconf.cvmfs.json
[2025-12-16 19:24:54] drwx------. 5 boinc boinc      4096 Dec 16 13:11 pilot3
[2025-12-16 19:24:54] -rw-------. 1 boinc boinc 204556093 Dec 16 19:21 HITS.47898782._004357.pool.root.1
[2025-12-16 19:24:54] -rw-r--r--. 1 boinc boinc       531 Dec 16 19:21 boinc_task_state.xml
[2025-12-16 19:24:54] -rw-------. 1 boinc boinc      1030 Dec 16 19:22 memory_monitor_summary.json
[2025-12-16 19:24:54] -rw-------. 1 boinc boinc   1516240 Dec 16 19:22 agis_ddmendpoints.agis.ALL.json
[2025-12-16 19:24:54] -rw-------. 1 boinc boinc    561627 Dec 16 19:22 log.47898782._004357.job.log.tgz.1
[2025-12-16 19:24:54] -rw-------. 1 boinc boinc      7771 Dec 16 19:24 heartbeat.json
[2025-12-16 19:24:54] -rw-r--r--. 1 boinc boinc      8192 Dec 16 19:24 boinc_mmap_file
[2025-12-16 19:24:54] -rw-r--r--. 1 boinc boinc        28 Dec 16 19:24 wrapper_checkpoint.txt
[2025-12-16 19:24:54] -rw-------. 1 boinc boinc        95 Dec 16 19:24 pilot_heartbeat.json
[2025-12-16 19:24:54] -rw-------. 1 boinc boinc       820 Dec 16 19:24 pilotlog.txt
[2025-12-16 19:24:54] -rw-------. 1 boinc boinc   2986223 Dec 16 19:24 log.47898782._004357.job.log.1
[2025-12-16 19:24:54] -rw-------. 1 boinc boinc       357 Dec 16 19:24 output.list
[2025-12-16 19:24:54] -rw-r--r--. 1 boinc boinc       620 Dec 16 19:24 runtime_log
[2025-12-16 19:24:54] -rw-------. 1 boinc boinc   3563520 Dec 16 19:24 result.tar.gz
[2025-12-16 19:24:54] -rw-r--r--. 1 boinc boinc      8833 Dec 16 19:24 runtime_log.err
[2025-12-16 19:24:54] -rw-------. 1 boinc boinc       658 Dec 16 19:24 PKkMDmtdZp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm85YKDmcVrkln.diag
[2025-12-16 19:24:54] -rw-r--r--. 1 boinc boinc     21059 Dec 16 19:24 stderr.txt
[2025-12-16 19:24:54] HITS file was successfully produced:
[2025-12-16 19:24:54] -rw-------. 1 boinc boinc 204556093 Dec 16 19:21 shared/HITS.pool.root.1
[2025-12-16 19:24:54]  *** Contents of shared directory: ***
[2025-12-16 19:24:54] total 413072
[2025-12-16 19:24:54] -rw-r--r--. 2 boinc boinc 214253338 Dec 16 13:07 ATLAS.root_0
[2025-12-16 19:24:54] -rw-r--r--. 2 boinc boinc     15847 Dec 16 13:07 start_atlas.sh
[2025-12-16 19:24:54] -rw-r--r--. 2 boinc boinc    592395 Dec 16 13:07 input.tar.gz
[2025-12-16 19:24:54] -rw-------. 1 boinc boinc 204556093 Dec 16 19:21 HITS.pool.root.1
[2025-12-16 19:24:54] -rw-------. 1 boinc boinc   3563520 Dec 16 19:24 result.tar.gz
19:24:56 (20234): run_atlas exited; CPU time 83372.524513
19:24:56 (20234): called boinc_finish(0)

</stderr_txt>
]]>

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