Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:47:07 (11904): wrapper (7.7.26015): starting
00:47:07 (11904): wrapper: running run_atlas (--nthreads 12)
[2025-12-16 00:47:07] Arguments: --nthreads 12
[2025-12-16 00:47:07] Threads: 12
[2025-12-16 00:47:07] Checking for CVMFS
[2025-12-16 00:47:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 00:47:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 00:47:08] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 00:47:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 00:47:08] 2.11.2.0 2937 316081 95264 154060 3 59 15928228 20275201 1 130560 1 140617302 99.966 18931296 15847 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 00:47:08] CVMFS is ok
[2025-12-16 00:47:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 00:47:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 00:47:08] Further information can be found at the LHC@home message board.
[2025-12-16 00:47:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 00:47:08] Checking for apptainer binary...
[2025-12-16 00:47:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 00:47:08] Running /usr/bin/apptainer --version
[2025-12-16 00:47:08] apptainer version 1.3.2-1.el7
[2025-12-16 00:47:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 00:47:09] c-205-8.aglt2.org
[2025-12-16 00:47:09] apptainer works
[2025-12-16 00:47:09] Set ATHENA_PROC_NUMBER=12
[2025-12-16 00:47:09] Set ATHENA_CORE_NUMBER=12
[2025-12-16 00:47:10] Starting ATLAS job with PandaID=6930228347
[2025-12-16 00:47:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 02:26:41]  *** The last 200 lines of the pilot log: ***
[2025-12-16 02:26:41]  protocol_id=None
[2025-12-16 02:26:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-16 02:26:41]  replicas=None
[2025-12-16 02:26:41]  scope=mc23_13p6TeV
[2025-12-16 02:26:41]  status=None
[2025-12-16 02:26:41]  status_code=0
[2025-12-16 02:26:41]  storage_token=
[2025-12-16 02:26:41]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6930228347/log.47898782._004131.job.log.tgz.1
[2025-12-16 02:26:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/10/b5/log.47898782._004131.job.log.tgz.1
[2025-12-16 02:26:41]  workdir=None
[2025-12-16 02:26:41] ]
[2025-12-16 02:26:41] 2025-12-16 07:25:57,680 | INFO     | transferring file log.47898782._004131.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6930228347/log.47898782._004131.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-16 02:26:41] 2025-12-16 07:25:57,680 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6930228347/log.47898782._004131.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898782._004131.job
[2025-12-16 02:26:41] 2025-12-16 07:25:57,702 | INFO     | adding to output.list: log.47898782._004131.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/10/b5/log.47898782._004131.job.log.tg
[2025-12-16 02:26:41] 2025-12-16 07:25:57,703 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-16 02:26:41] 2025-12-16 07:25:57,703 | INFO     | summary of transferred files:
[2025-12-16 02:26:41] 2025-12-16 07:25:57,704 | INFO     |  -- lfn=log.47898782._004131.job.log.tgz.1, status_code=0, status=transferred
[2025-12-16 02:26:41] 2025-12-16 07:25:57,704 | INFO     | stage-out finished correctly
[2025-12-16 02:26:41] 2025-12-16 07:25:57,787 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-16 02:26:41] 2025-12-16 07:25:58,007 | INFO     | time since job start (5912s) is within the limit (174528.0s)
[2025-12-16 02:26:41] 2025-12-16 07:26:00,013 | INFO     | time since job start (5914s) is within the limit (174528.0s)
[2025-12-16 02:26:41] 2025-12-16 07:26:00,756 | INFO     | job 6930228347 has state=finished
[2025-12-16 02:26:41] 2025-12-16 07:26:00,757 | INFO     | preparing for final server update for job 6930228347 in state='finished'
[2025-12-16 02:26:41] 2025-12-16 07:26:00,757 | INFO     | this job has now completed (state=finished)
[2025-12-16 02:26:41] 2025-12-16 07:26:00,757 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-16 02:26:41] 2025-12-16 07:26:00,758 | INFO     | log transfer has been attempted: DONE
[2025-12-16 02:26:41] 2025-12-16 07:26:00,758 | INFO     | job 6930228347 has finished - writing final server update
[2025-12-16 02:26:41] 2025-12-16 07:26:00,758 | INFO     | total number of processed events: 400 (read)
[2025-12-16 02:26:41] 2025-12-16 07:26:00,759 | INFO     | executing command: lscpu
[2025-12-16 02:26:41] 2025-12-16 07:26:00,782 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 02:26:41] 2025-12-16 07:26:01,765 | WARNING  | process 22315 can no longer be monitored (due to stat problems) - aborting
[2025-12-16 02:26:41] 2025-12-16 07:26:01,765 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6930228347/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 02:26:41] 2025-12-16 07:26:01,855 | INFO     | number of running child processes to parent process 22315: 1
[2025-12-16 02:26:41] 2025-12-16 07:26:01,855 | INFO     | maximum number of monitored processes: 6
[2025-12-16 02:26:41] 2025-12-16 07:26:02,018 | INFO     | time since job start (5916s) is within the limit (174528.0s)
[2025-12-16 02:26:41] 2025-12-16 07:26:04,023 | INFO     | time since job start (5918s) is within the limit (174528.0s)
[2025-12-16 02:26:41] 2025-12-16 07:26:04,357 | INFO     | monitor loop #436: job 0:6930228347 is in state 'finished'
[2025-12-16 02:26:41] 2025-12-16 07:26:04,357 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 02:26:41] 2025-12-16 07:26:05,429 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-16 02:26:41] 2025-12-16 07:26:05,431 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-12-16 02:26:41] 2025-12-16 07:26:05,433 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6930228347/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 02:26:41] 2025-12-16 07:26:05,433 | INFO     | extracted standard info from prmon json
[2025-12-16 02:26:41] 2025-12-16 07:26:05,434 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 02:26:41] 2025-12-16 07:26:05,434 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 02:26:41] 2025-12-16 07:26:05,434 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 02:26:41] 2025-12-16 07:26:05,434 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 02:26:41] 2025-12-16 07:26:05,436 | INFO     | fitting pss+swap vs Time
[2025-12-16 02:26:41] 2025-12-16 07:26:05,436 | INFO     | sum of square deviations: 226022842.5
[2025-12-16 02:26:41] 2025-12-16 07:26:05,436 | INFO     | sum of deviations: -12149193862.500002
[2025-12-16 02:26:41] 2025-12-16 07:26:05,437 | INFO     | mean x: 1765867094.5
[2025-12-16 02:26:41] 2025-12-16 07:26:05,437 | INFO     | mean y: 2751354.3666666667
[2025-12-16 02:26:41] 2025-12-16 07:26:05,437 | INFO     | intersect: 94921749050.31906
[2025-12-16 02:26:41] 2025-12-16 07:26:05,437 | INFO     | chi2: 0.07790013844493274
[2025-12-16 02:26:41] 2025-12-16 07:26:05,437 | INFO     | current memory leak: -53.75 B/s (using 90 data points, chi2=0.08)
[2025-12-16 02:26:41] 2025-12-16 07:26:05,438 | INFO     | could have reported an average CPU frequency of 2134 MHz (7 samples)
[2025-12-16 02:26:41] 2025-12-16 07:26:05,438 | INFO     | ..............................
[2025-12-16 02:26:41] 2025-12-16 07:26:05,438 | INFO     | . Timing measurements:
[2025-12-16 02:26:41] 2025-12-16 07:26:05,438 | INFO     | . get job = 0 s
[2025-12-16 02:26:41] 2025-12-16 07:26:05,438 | INFO     | . initial setup = 2 s
[2025-12-16 02:26:41] 2025-12-16 07:26:05,438 | INFO     | . payload setup = 7 s
[2025-12-16 02:26:41] 2025-12-16 07:26:05,438 | INFO     | . stage-in = 0 s
[2025-12-16 02:26:41] 2025-12-16 07:26:05,438 | INFO     | . payload execution = 5883 s
[2025-12-16 02:26:41] 2025-12-16 07:26:05,438 | INFO     | . stage-out = 0 s
[2025-12-16 02:26:41] 2025-12-16 07:26:05,439 | INFO     | . log creation = 0 s
[2025-12-16 02:26:41] 2025-12-16 07:26:05,439 | INFO     | ..............................
[2025-12-16 02:26:41] 2025-12-16 07:26:05,519 | INFO     | 
[2025-12-16 02:26:41] 2025-12-16 07:26:05,519 | INFO     | job summary report
[2025-12-16 02:26:41] 2025-12-16 07:26:05,519 | INFO     | --------------------------------------------------
[2025-12-16 02:26:41] 2025-12-16 07:26:05,520 | INFO     | PanDA job id: 6930228347
[2025-12-16 02:26:41] 2025-12-16 07:26:05,520 | INFO     | task id: 47898782
[2025-12-16 02:26:41] 2025-12-16 07:26:05,520 | INFO     | errors: (none)
[2025-12-16 02:26:41] 2025-12-16 07:26:05,520 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 02:26:41] 2025-12-16 07:26:05,520 | INFO     | pilot state: finished 
[2025-12-16 02:26:41] 2025-12-16 07:26:05,520 | INFO     | transexitcode: 0
[2025-12-16 02:26:41] 2025-12-16 07:26:05,521 | INFO     | exeerrorcode: 0
[2025-12-16 02:26:41] 2025-12-16 07:26:05,521 | INFO     | exeerrordiag: 
[2025-12-16 02:26:41] 2025-12-16 07:26:05,521 | INFO     | exitcode: 0
[2025-12-16 02:26:41] 2025-12-16 07:26:05,521 | INFO     | exitmsg: OK
[2025-12-16 02:26:41] 2025-12-16 07:26:05,521 | INFO     | cpuconsumptiontime: 65381 s
[2025-12-16 02:26:41] 2025-12-16 07:26:05,521 | INFO     | nevents: 400
[2025-12-16 02:26:41] 2025-12-16 07:26:05,522 | INFO     | neventsw: 0
[2025-12-16 02:26:41] 2025-12-16 07:26:05,522 | INFO     | pid: 22315
[2025-12-16 02:26:41] 2025-12-16 07:26:05,522 | INFO     | pgrp: 22315
[2025-12-16 02:26:41] 2025-12-16 07:26:05,522 | INFO     | corecount: 12
[2025-12-16 02:26:41] 2025-12-16 07:26:05,522 | INFO     | event service: False
[2025-12-16 02:26:41] 2025-12-16 07:26:05,522 | INFO     | sizes: {0: 2283702, 1: 2283957, 6: 2284219, 12: 2284247, 5895: 2310971, 5896: 2320153, 5904: 2320291}
[2025-12-16 02:26:41] 2025-12-16 07:26:05,523 | INFO     | --------------------------------------------------
[2025-12-16 02:26:41] 2025-12-16 07:26:05,523 | INFO     | 
[2025-12-16 02:26:41] 2025-12-16 07:26:05,523 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-16 02:26:41] 2025-12-16 07:26:05,545 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 02:26:41] 2025-12-16 07:26:05,545 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 02:26:41] 2025-12-16 07:26:05,545 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 02:26:41] 2025-12-16 07:26:05,546 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 02:26:41] 2025-12-16 07:26:05,546 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 02:26:41] 2025-12-16 07:26:05,546 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 02:26:41] 2025-12-16 07:26:05,546 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 02:26:41] 2025-12-16 07:26:05,546 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 02:26:41] 2025-12-16 07:26:05,546 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 02:26:41] 2025-12-16 07:26:05,547 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 02:26:41] 2025-12-16 07:26:05,547 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 02:26:41] 2025-12-16 07:26:05,547 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 02:26:41] 2025-12-16 07:26:05,547 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 02:26:41] 2025-12-16 07:26:05,547 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 02:26:41] 2025-12-16 07:26:05,547 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 02:26:41] 2025-12-16 07:26:05,548 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 02:26:41] 2025-12-16 07:26:05,548 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 02:26:41] 2025-12-16 07:26:05,548 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 02:26:41] 2025-12-16 07:26:05,548 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 02:26:41] 2025-12-16 07:26:05,548 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 02:26:41] 2025-12-16 07:26:05,549 | INFO     | job 6930228347 has completed (purged errors)
[2025-12-16 02:26:41] 2025-12-16 07:26:05,549 | INFO     | overall cleanup function is called
[2025-12-16 02:26:41] 2025-12-16 07:26:06,556 | INFO     | --- collectZombieJob: --- 10, [22315]
[2025-12-16 02:26:41] 2025-12-16 07:26:06,556 | INFO     | zombie collector waiting for pid 22315
[2025-12-16 02:26:41] 2025-12-16 07:26:06,556 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 02:26:41] 2025-12-16 07:26:06,557 | INFO     | collected zombie processes
[2025-12-16 02:26:41] 2025-12-16 07:26:06,557 | INFO     | will attempt to kill all subprocesses of pid=22315
[2025-12-16 02:26:41] 2025-12-16 07:26:06,650 | INFO     | process IDs to be killed: [22315] (in reverse order)
[2025-12-16 02:26:41] 2025-12-16 07:26:06,761 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 02:26:41] 2025-12-16 07:26:06,762 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 02:26:41] 2025-12-16 07:26:06,766 | INFO     | did not find any defunct processes belonging to 22315
[2025-12-16 02:26:41] 2025-12-16 07:26:06,769 | INFO     | did not find any defunct processes belonging to 22315
[2025-12-16 02:26:41] 2025-12-16 07:26:06,769 | INFO     | ready for new job
[2025-12-16 02:26:41] 2025-12-16 07:26:06,770 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 02:26:41] 2025-12-16 07:26:06,771 | INFO     | ***************************************
[2025-12-16 02:26:41] 2025-12-16 07:26:06,771 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 02:26:41] 2025-12-16 07:26:06,771 | INFO     | ***************************************
[2025-12-16 02:26:41] 2025-12-16 07:26:06,771 | INFO     | 
[2025-12-16 02:26:41] 2025-12-16 07:26:06,772 | INFO     | architecture information:
[2025-12-16 02:26:41] 2025-12-16 07:26:06,772 | INFO     | executing command: cat /etc/os-release
[2025-12-16 02:26:41] 2025-12-16 07:26:06,787 | INFO     | cat /etc/os-release:
[2025-12-16 02:26:41] NAME="CentOS Linux"
[2025-12-16 02:26:41] VERSION="7 (Core)"
[2025-12-16 02:26:41] ID="centos"
[2025-12-16 02:26:41] ID_LIKE="rhel fedora"
[2025-12-16 02:26:41] VERSION_ID="7"
[2025-12-16 02:26:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 02:26:41] ANSI_COLOR="0;31"
[2025-12-16 02:26:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 02:26:41] HOME_URL="https://www.centos.org/"
[2025-12-16 02:26:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 02:26:41] 
[2025-12-16 02:26:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 02:26:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 02:26:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 02:26:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 02:26:41] 
[2025-12-16 02:26:41] 2025-12-16 07:26:06,788 | INFO     | ***************************************
[2025-12-16 02:26:41] 2025-12-16 07:26:07,289 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-16 02:26:41] 2025-12-16 07:26:07,305 | INFO     | sufficient remaining disk space (29362225152 B)
[2025-12-16 02:26:41] 2025-12-16 07:26:07,305 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 02:26:41] 2025-12-16 07:26:07,306 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 02:26:41] 2025-12-16 07:26:07,306 | INFO     | update_server=False
[2025-12-16 02:26:41] 2025-12-16 07:26:07,306 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 02:26:41] 2025-12-16 07:26:07,306 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 02:26:41] 2025-12-16 07:26:07,595 | INFO     | all payload control threads have been joined
[2025-12-16 02:26:41] 2025-12-16 07:26:07,726 | INFO     | all data control threads have been joined
[2025-12-16 02:26:41] 2025-12-16 07:26:07,865 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 02:26:41] 2025-12-16 07:26:07,865 | INFO     | aborting loop
[2025-12-16 02:26:41] 2025-12-16 07:26:08,302 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 02:26:41] 2025-12-16 07:26:08,309 | INFO     | [job] retrieve thread has finished
[2025-12-16 02:26:41] 2025-12-16 07:26:08,311 | INFO     | [job] queue monitor thread has finished
[2025-12-16 02:26:41] 2025-12-16 07:26:08,317 | INFO     | [payload] failed_post thread has finished
[2025-12-16 02:26:41] 2025-12-16 07:26:08,377 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 02:26:41] 2025-12-16 07:26:08,383 | INFO     | all job control threads have been joined
[2025-12-16 02:26:41] 2025-12-16 07:26:08,487 | INFO     | [data] copytool_in thread has finished
[2025-12-16 02:26:41] 2025-12-16 07:26:08,600 | INFO     | [payload] control thread has finished
[2025-12-16 02:26:41] 2025-12-16 07:26:08,732 | INFO     | [data] control thread has finished
[2025-12-16 02:26:41] 2025-12-16 07:26:08,871 | INFO     | [job] job monitor thread has finished
[2025-12-16 02:26:41] 2025-12-16 07:26:09,053 | INFO     | [payload] validate_post thread has finished
[2025-12-16 02:26:41] 2025-12-16 07:26:09,156 | INFO     | [job] validate thread has finished
[2025-12-16 02:26:41] 2025-12-16 07:26:09,355 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 02:26:41] 2025-12-16 07:26:09,381 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 02:26:41] 2025-12-16 07:26:09,385 | INFO     | [job] control thread has finished
[2025-12-16 02:26:41] 2025-12-16 07:26:09,625 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 02:26:41] 2025-12-16 07:26:10,307 | INFO     | [data] copytool_out thread has finished
[2025-12-16 02:26:41] 2025-12-16 07:26:12,380 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 02:26:41] 2025-12-16 07:26:17,452 | INFO     | job.realtimelogging is not enabled
[2025-12-16 02:26:41] 2025-12-16 07:26:18,458 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 02:26:41] 2025-12-16 07:26:35,235 | INFO     | [monitor] cgroup control has ended
[2025-12-16 02:26:41] 2025-12-16 07:26:36,493 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140209034864448)>', '<ExcThread(monitor, started 140208292996864)>']
[2025-12-16 02:26:41] 2025-12-16 07:26:37,225 | INFO     | PID=15944 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 02:26:41] 2025-12-16 07:26:37,226 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 02:26:41] 2025-12-16 07:26:37,226 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 02:26:41] 2025-12-16 07:26:37,226 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 02:26:41] 2025-12-16 07:26:37,226 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 02:26:41] 2025-12-16 07:26:37,226 | INFO     | [monitor] control thread has ended
[2025-12-16 02:26:41] 2025-12-16 07:26:41,502 | INFO     | all workflow threads have been joined
[2025-12-16 02:26:41] 2025-12-16 07:26:41,502 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 02:26:41] 2025-12-16 07:26:41,503 | INFO     | traces error code: 0
[2025-12-16 02:26:41] 2025-12-16 07:26:41,503 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 02:26:41] 2025-12-16 07:26:41,595 [wrapper] ==== pilot stdout END ====
[2025-12-16 02:26:41] 2025-12-16 07:26:41,599 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 02:26:41] 2025-12-16 07:26:41,602 [wrapper] pilotpid: 15944
[2025-12-16 02:26:41] 2025-12-16 07:26:41,607 [wrapper] Pilot exit status: 0
[2025-12-16 02:26:41] 2025-12-16 07:26:41,623 [wrapper] pandaids: 6930228347
[2025-12-16 02:26:41] 2025-12-16 07:26:41,660 [wrapper] cleanup supervisor_pilot 21466 15945
[2025-12-16 02:26:41] 2025-12-16 07:26:41,664 [wrapper] Test setup, not cleaning
[2025-12-16 02:26:41] 2025-12-16 07:26:41,667 [wrapper] apfmon messages muted
[2025-12-16 02:26:41] 2025-12-16 07:26:41,671 [wrapper] ==== wrapper stdout END ====
[2025-12-16 02:26:41] 2025-12-16 07:26:41,675 [wrapper] ==== wrapper stderr END ====
[2025-12-16 02:26:41]  *** Error codes and diagnostics ***
[2025-12-16 02:26:41]     "exeErrorCode": 0,
[2025-12-16 02:26:41]     "exeErrorDiag": "",
[2025-12-16 02:26:41]     "pilotErrorCode": 0,
[2025-12-16 02:26:41]     "pilotErrorDiag": "",
[2025-12-16 02:26:41]  *** Listing of results directory ***
[2025-12-16 02:26:41] total 409224
[2025-12-16 02:26:41] -rw-r--r-- 1 boincer umatlas    579449 Dec 15 21:06 pilot3.tar.gz
[2025-12-16 02:26:41] -rwx------ 1 boincer umatlas     36322 Dec 15 21:06 runpilot2-wrapper.sh
[2025-12-16 02:26:41] -rw-r--r-- 1 boincer umatlas      5112 Dec 15 21:07 queuedata.json
[2025-12-16 02:26:41] -rw-r--r-- 1 boincer umatlas       100 Dec 16 00:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 02:26:41] -rwxr-xr-x 1 boincer umatlas      7986 Dec 16 00:47 run_atlas
[2025-12-16 02:26:41] -rw-r--r-- 1 boincer umatlas       105 Dec 16 00:47 job.xml
[2025-12-16 02:26:41] -rw-r--r-- 2 boincer umatlas 212161427 Dec 16 00:47 EVNT.47898779._000106.pool.root.1
[2025-12-16 02:26:41] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 00:47 start_atlas.sh
[2025-12-16 02:26:41] drwxrwx--x 2 boincer umatlas      4096 Dec 16 00:47 shared
[2025-12-16 02:26:41] -rw-r--r-- 2 boincer umatlas    592403 Dec 16 00:47 input.tar.gz
[2025-12-16 02:26:41] -rw-r--r-- 1 boincer umatlas         0 Dec 16 00:47 boinc_lockfile
[2025-12-16 02:26:41] -rw-r--r-- 1 boincer umatlas      2522 Dec 16 00:47 pandaJob.out
[2025-12-16 02:26:41] -rw------- 1 boincer umatlas        57 Dec 16 00:47 setup.sh.local
[2025-12-16 02:26:41] -rw------- 1 boincer umatlas    994531 Dec 16 00:47 agis_schedconf.cvmfs.json
[2025-12-16 02:26:41] -rw------- 1 boincer umatlas   1516240 Dec 16 00:47 agis_ddmendpoints.agis.ALL.json
[2025-12-16 02:26:41] drwx------ 5 boincer umatlas      4096 Dec 16 00:47 pilot3
[2025-12-16 02:26:41] -rw-r--r-- 1 boincer umatlas      5951 Dec 16 02:20 init_data.xml
[2025-12-16 02:26:41] -rw------- 1 boincer umatlas 200475889 Dec 16 02:25 HITS.47898782._004131.pool.root.1
[2025-12-16 02:26:41] -rw-r--r-- 1 boincer umatlas       529 Dec 16 02:25 boinc_task_state.xml
[2025-12-16 02:26:41] -rw------- 1 boincer umatlas        95 Dec 16 02:25 pilot_heartbeat.json
[2025-12-16 02:26:41] -rw------- 1 boincer umatlas      1045 Dec 16 02:25 memory_monitor_summary.json
[2025-12-16 02:26:41] -rw------- 1 boincer umatlas    399459 Dec 16 02:25 log.47898782._004131.job.log.tgz.1
[2025-12-16 02:26:41] -rw------- 1 boincer umatlas      7842 Dec 16 02:26 heartbeat.json
[2025-12-16 02:26:41] -rw-r--r-- 1 boincer umatlas      8192 Dec 16 02:26 boinc_mmap_file
[2025-12-16 02:26:41] -rw-r--r-- 1 boincer umatlas        27 Dec 16 02:26 wrapper_checkpoint.txt
[2025-12-16 02:26:41] -rw------- 1 boincer umatlas      4818 Dec 16 02:26 pilotlog.txt
[2025-12-16 02:26:41] -rw------- 1 boincer umatlas    840772 Dec 16 02:26 log.47898782._004131.job.log.1
[2025-12-16 02:26:41] -rw------- 1 boincer umatlas       357 Dec 16 02:26 output.list
[2025-12-16 02:26:41] -rw-r--r-- 1 boincer umatlas       620 Dec 16 02:26 runtime_log
[2025-12-16 02:26:41] -rw------- 1 boincer umatlas   1259520 Dec 16 02:26 result.tar.gz
[2025-12-16 02:26:41] -rw-r--r-- 1 boincer umatlas      9339 Dec 16 02:26 runtime_log.err
[2025-12-16 02:26:41] -rw------- 1 boincer umatlas       658 Dec 16 02:26 cUWMDmkdZp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmv5YKDmj6Dytm.diag
[2025-12-16 02:26:41] -rw-r--r-- 1 boincer umatlas     21828 Dec 16 02:26 stderr.txt
[2025-12-16 02:26:41] HITS file was successfully produced:
[2025-12-16 02:26:41] -rw------- 1 boincer umatlas 200475889 Dec 16 02:25 shared/HITS.pool.root.1
[2025-12-16 02:26:41]  *** Contents of shared directory: ***
[2025-12-16 02:26:41] total 404808
[2025-12-16 02:26:41] -rw-r--r-- 2 boincer umatlas 212161427 Dec 16 00:47 ATLAS.root_0
[2025-12-16 02:26:41] -rw-r--r-- 2 boincer umatlas     15847 Dec 16 00:47 start_atlas.sh
[2025-12-16 02:26:41] -rw-r--r-- 2 boincer umatlas    592403 Dec 16 00:47 input.tar.gz
[2025-12-16 02:26:41] -rw------- 1 boincer umatlas 200475889 Dec 16 02:25 HITS.pool.root.1
[2025-12-16 02:26:41] -rw------- 1 boincer umatlas   1259520 Dec 16 02:26 result.tar.gz
02:26:43 (11904): run_atlas exited; CPU time 65373.218853
02:26:43 (11904): called boinc_finish(0)

</stderr_txt>
]]>

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