Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2025-12-16 14:24:18 (29480): vboxwrapper version 26210
2025-12-16 14:24:18 (29480): BOINC client version: 8.2.8
2025-12-16 14:24:19 (29480): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-12-16 14:24:19 (29480): Successfully copied 'init_data.xml' to the shared directory.
2025-12-16 14:24:19 (29480): Create VM. (boinc_2f2bbd98b0da40f4, slot#0)
2025-12-16 14:24:20 (29480): Setting Memory Size for VM. (4600MB)
2025-12-16 14:24:20 (29480): Setting CPU Count for VM. (6)
2025-12-16 14:24:20 (29480): Setting Chipset Options for VM.
2025-12-16 14:24:21 (29480): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-12-16 14:24:21 (29480): Setting Boot Options for VM.
2025-12-16 14:24:21 (29480): Setting Network Configuration for NAT. (Driver: virtio)
2025-12-16 14:24:22 (29480): Enabling VM Network Access.
2025-12-16 14:24:22 (29480): Disabling USB Support for VM.
2025-12-16 14:24:22 (29480): Disabling COM Port Support for VM.
2025-12-16 14:24:23 (29480): Disabling LPT Port Support for VM.
2025-12-16 14:24:23 (29480): Disabling Audio Support for VM.
2025-12-16 14:24:23 (29480): Disabling Clipboard Support for VM.
2025-12-16 14:24:23 (29480): Disabling Drag and Drop Support for VM.
2025-12-16 14:24:24 (29480): Adding storage controller(s) to VM.
2025-12-16 14:24:24 (29480): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-12-16 14:24:26 (29480): Adding VirtualBox Guest Additions to VM.
2025-12-16 14:24:26 (29480): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-12-16 14:24:27 (29480): forwarding host port 62660 to guest port 80
2025-12-16 14:24:27 (29480): Enabling remote desktop for VM.
2025-12-16 14:24:28 (29480): Enabling shared directory for VM.
2025-12-16 14:24:28 (29480): Starting VM using VBoxManage interface. (boinc_2f2bbd98b0da40f4, slot#0)
2025-12-16 14:24:34 (29480): Successfully started VM. (PID = '10476')
2025-12-16 14:24:34 (29480): Reporting VM Process ID to BOINC.
2025-12-16 14:24:34 (29480): Guest Log: BIOS: VirtualBox 7.2.2
2025-12-16 14:24:34 (29480): Guest Log: CPUID EDX: 0x178bfbff
2025-12-16 14:24:34 (29480): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-12-16 14:24:34 (29480): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-12-16 14:24:34 (29480): VM state change detected. (old = 'poweredoff', new = 'running')
2025-12-16 14:24:34 (29480): Detected: Web Application Enabled (http://localhost:62660)
2025-12-16 14:24:34 (29480): Detected: Remote Desktop Enabled (localhost:62661)
2025-12-16 14:24:34 (29480): Preference change detected
2025-12-16 14:24:34 (29480): Setting CPU throttle for VM. (50%)
2025-12-16 14:24:34 (29480): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-12-16 14:24:36 (29480): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-12-16 14:24:36 (29480): Guest Log: BIOS: Booting from Hard Disk...
2025-12-16 14:24:39 (29480): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-12-16 14:24:39 (29480): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-12-16 14:24:39 (29480): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-12-16 14:24:49 (29480): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-12-16 14:24:49 (29480): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-12-16 14:25:04 (29480): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-12-16 14:25:04 (29480): Guest Log: 00:00:00.000103 main     Log opened 2025-12-16T14:25:02.216631000Z
2025-12-16 14:25:04 (29480): Guest Log: 00:00:00.000200 main     OS Product: Linux
2025-12-16 14:25:04 (29480): Guest Log: 00:00:00.000220 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-12-16 14:25:04 (29480): Guest Log: 00:00:00.000238 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-12-16 14:25:04 (29480): Guest Log: 00:00:00.000254 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-12-16 14:25:04 (29480): Guest Log: 00:00:00.000254 main     Process ID: 1340
2025-12-16 14:25:04 (29480): Guest Log: 00:00:00.000255 main     Package type: LINUX_64BITS_GENERIC
2025-12-16 14:25:04 (29480): Guest Log: 00:00:00.000856 main     5.2.32 r132073 started. Verbose level = 0
2025-12-16 14:25:04 (29480): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-12-16 14:25:04 (29480): Guest Log: [INFO] Mounting shared directory
2025-12-16 14:25:04 (29480): Guest Log: [INFO] Checking for init_data.xml
2025-12-16 14:25:06 (29480): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-12-16 14:25:06 (29480): Guest Log: [INFO] Detected branch: prod
2025-12-16 14:25:06 (29480): Guest Log: This is the prod version of the ATLAS job wrapper
2025-12-16 14:25:06 (29480): Guest Log: Copying input files
2025-12-16 14:25:08 (29480): Guest Log: Copied input files into RunAtlas.
2025-12-16 14:25:08 (29480): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-12-16 14:25:08 (29480): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-12-16 14:25:08 (29480): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-12-16 14:25:08 (29480): Guest Log: Further information can be found at the LHC@home message board.
2025-12-16 14:25:15 (29480): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-12-16 14:25:15 (29480): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-12-16 14:25:15 (29480): Guest Log: 2.6.3.0 1625 0 34116 154073 4 1 3117737 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-12-16 14:25:17 (29480): Guest Log: copied the webapp to /var/www
2025-12-16 14:25:17 (29480): Guest Log: ATHENA_PROC_NUMBER=6
2025-12-16 14:25:17 (29480): Guest Log: ATHENA_CORE_NUMBER=6
2025-12-16 14:25:17 (29480): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-12-16 14:25:17 (29480): Guest Log:  *** Starting ATLAS job. (PandaID=6930227807 taskID=47898763) ***
2025-12-16 16:04:37 (29480): Status Report: Elapsed Time: '6000.000000'
2025-12-16 16:04:37 (29480): Status Report: CPU Time: '20235.046875'
2025-12-16 16:47:22 (29480): Guest Log:  *** Job finished ***
2025-12-16 16:47:22 (29480): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-12-16 16:47:22 (29480): Guest Log: 2025-12-16 16:47:13,976 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-12-16 16:47:22 (29480): Guest Log: 2025-12-16 16:47:13,976 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-12-16 16:47:22 (29480): Guest Log: 2025-12-16 16:47:14,610 | INFO     | [monitor] cgroup control has ended
2025-12-16 16:47:22 (29480): Guest Log: 2025-12-16 16:47:15,882 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140184294836032)>', '<ExcThread(monitor, started 140183546611456)>']
2025-12-16 16:47:22 (29480): Guest Log: 2025-12-16 16:47:15,979 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-12-16 16:47:22 (29480): Guest Log: 2025-12-16 16:47:15,979 | INFO     | [monitor] control thread has ended
2025-12-16 16:47:22 (29480): Guest Log: 2025-12-16 16:47:20,888 | INFO     | all workflow threads have been joined
2025-12-16 16:47:22 (29480): Guest Log: 2025-12-16 16:47:20,888 | INFO     | end of generic workflow (traces error code: 0)
2025-12-16 16:47:22 (29480): Guest Log: 2025-12-16 16:47:20,888 | INFO     | traces error code: 0
2025-12-16 16:47:22 (29480): Guest Log: 2025-12-16 16:47:20,888 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-12-16 16:47:22 (29480): Guest Log: 2025-12-16 16:47:21,053 [wrapper] ==== pilot stdout END ====
2025-12-16 16:47:22 (29480): Guest Log: 2025-12-16 16:47:21,057 [wrapper] ==== wrapper stdout RESUME ====
2025-12-16 16:47:22 (29480): Guest Log: 2025-12-16 16:47:21,060 [wrapper] pilotpid: 6029
2025-12-16 16:47:22 (29480): Guest Log: 2025-12-16 16:47:21,063 [wrapper] Pilot exit status: 0
2025-12-16 16:47:22 (29480): Guest Log: 2025-12-16 16:47:21,141 [wrapper] pandaids: 6930227807
2025-12-16 16:47:22 (29480): Guest Log: 2025-12-16 16:47:21,162 [wrapper] cleanup supervisor_pilot  5408 6030
2025-12-16 16:47:22 (29480): Guest Log: 2025-12-16 16:47:21,165 [wrapper] Test setup, not cleaning
2025-12-16 16:47:22 (29480): Guest Log: 2025-12-16 16:47:21,169 [wrapper] apfmon messages muted
2025-12-16 16:47:22 (29480): Guest Log: 2025-12-16 16:47:21,172 [wrapper] ==== wrapper stdout END ====
2025-12-16 16:47:22 (29480): Guest Log: 2025-12-16 16:47:21,175 [wrapper] ==== wrapper stderr END ====
2025-12-16 16:47:22 (29480): Guest Log:  *** Error codes and diagnostics ***
2025-12-16 16:47:22 (29480): Guest Log:     "exeErrorCode": 0,
2025-12-16 16:47:22 (29480): Guest Log:     "exeErrorDiag": "",
2025-12-16 16:47:22 (29480): Guest Log:     "pilotErrorCode": 0,
2025-12-16 16:47:22 (29480): Guest Log:     "pilotErrorDiag": "",
2025-12-16 16:47:22 (29480): Guest Log:  *** Listing of results directory ***
2025-12-16 16:47:22 (29480): Guest Log: total 220588
2025-12-16 16:47:22 (29480): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Dec 16 02:06 queuedata.json
2025-12-16 16:47:22 (29480): Guest Log: -rw-r--r--. 1 atlas atlas    579449 Dec 16 02:06 pilot3.tar.gz
2025-12-16 16:47:22 (29480): Guest Log: -rwx------. 1 atlas atlas     36322 Dec 16 02:06 runpilot2-wrapper.sh
2025-12-16 16:47:22 (29480): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Dec 16 14:25 start_atlas.sh
2025-12-16 16:47:22 (29480): Guest Log: -rwxr-xr-x. 1 atlas atlas    592399 Dec 16 14:25 input.tar.gz
2025-12-16 16:47:22 (29480): Guest Log: -rwxr-xr-x. 1 atlas atlas      8726 Dec 16 14:25 init_data.xml
2025-12-16 16:47:22 (29480): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Dec 16 14:25 EVNT.47898761._000718.pool.root.1 -> /data/./ATLAS.root_0
2025-12-16 16:47:22 (29480): Guest Log: -rw-r--r--. 1 atlas atlas      2508 Dec 16 14:25 pandaJob.out
2025-12-16 16:47:22 (29480): Guest Log: -rw-------. 1 atlas atlas    987355 Dec 16 14:26 agis_schedconf.cvmfs.json
2025-12-16 16:47:22 (29480): Guest Log: -rw-------. 1 atlas atlas   1516240 Dec 16 14:26 agis_ddmendpoints.agis.ALL.json
2025-12-16 16:47:22 (29480): Guest Log: drwx------. 5 atlas atlas      4096 Dec 16 14:26 pilot3
2025-12-16 16:47:22 (29480): Guest Log: -rw-------. 1 atlas atlas 219249776 Dec 16 16:45 HITS.47898763._018080.pool.root.1
2025-12-16 16:47:22 (29480): Guest Log: -rw-------. 1 atlas atlas      1039 Dec 16 16:46 memory_monitor_summary.json
2025-12-16 16:47:22 (29480): Guest Log: -rw-------. 1 atlas atlas    355109 Dec 16 16:46 log.47898763._018080.job.log.tgz.1
2025-12-16 16:47:22 (29480): Guest Log: -rw-------. 1 atlas atlas        95 Dec 16 16:46 pilot_heartbeat.json
2025-12-16 16:47:22 (29480): Guest Log: -rw-------. 1 atlas atlas      7786 Dec 16 16:46 heartbeat.json
2025-12-16 16:47:22 (29480): Guest Log: -rw-------. 1 atlas atlas      4877 Dec 16 16:47 pilotlog.txt
2025-12-16 16:47:22 (29480): Guest Log: -rw-------. 1 atlas atlas   1042905 Dec 16 16:47 log.47898763._018080.job.log.1
2025-12-16 16:47:22 (29480): Guest Log: -rw-------. 1 atlas atlas       357 Dec 16 16:47 output.list
2025-12-16 16:47:22 (29480): Guest Log: -rw-r--r--. 1 atlas atlas       620 Dec 16 16:47 runtime_log
2025-12-16 16:47:22 (29480): Guest Log: -rw-------. 1 atlas atlas   1413120 Dec 16 16:47 result.tar.gz
2025-12-16 16:47:22 (29480): Guest Log: -rw-r--r--. 1 atlas atlas      8767 Dec 16 16:47 runtime_log.err
2025-12-16 16:47:22 (29480): Guest Log: -rw-------. 1 atlas atlas       661 Dec 16 16:47 oraKDmbdZp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmycUKDmxqEfTm.diag
2025-12-16 16:47:22 (29480): Guest Log: Looking for outputfile HITS.47898763._018080.pool.root.1
2025-12-16 16:47:22 (29480): Guest Log: HITS file was successfully produced
2025-12-16 16:47:22 (29480): Guest Log: -rw-------. 1 atlas atlas 219249776 Dec 16 16:45 /home/atlas/RunAtlas/HITS.47898763._018080.pool.root.1
2025-12-16 16:47:23 (29480): Guest Log: Successfully finished the ATLAS job!
2025-12-16 16:47:23 (29480): Guest Log: Copying the results back to the shared directory!
2025-12-16 16:47:23 (29480): Guest Log:  *** Contents of shared directory: ***
2025-12-16 16:47:23 (29480): Guest Log: total 433180
2025-12-16 16:47:23 (29480): Guest Log: -rwxrwxrwx. 1 root root 222287180 Dec 16 14:24 ATLAS.root_0
2025-12-16 16:47:23 (29480): Guest Log: -rwxrwxrwx. 1 root root 219249776 Dec 16 16:47 HITS.pool.root.1
2025-12-16 16:47:23 (29480): Guest Log: -rwxrwxrwx. 1 root root      8726 Dec 16 14:24 init_data.xml
2025-12-16 16:47:23 (29480): Guest Log: -rwxrwxrwx. 1 root root    592399 Dec 16 05:34 input.tar.gz
2025-12-16 16:47:23 (29480): Guest Log: -rwxrwxrwx. 1 root root   1413120 Dec 16  2025 result.tar.gz
2025-12-16 16:47:23 (29480): Guest Log: -rwxrwxrwx. 1 root root     15847 Dec 16 05:34 start_atlas.sh
2025-12-16 16:47:23 (29480): Guest Log:  *** Success! Shutting down the machine. ***
2025-12-16 16:47:23 (29480): VM Completion File Detected.
2025-12-16 16:47:23 (29480): Powering off VM.
2025-12-16 16:47:24 (29480): Successfully stopped VM.
2025-12-16 16:47:24 (29480): Deregistering VM. (boinc_2f2bbd98b0da40f4, slot#0)
2025-12-16 16:47:24 (29480): Removing network bandwidth throttle group from VM.
2025-12-16 16:47:24 (29480): Removing VM from VirtualBox.
2025-12-16 16:47:29 (29480): called boinc_finish(0)

</stderr_txt>
]]>

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