Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:15:10 (514658): wrapper (7.7.26015): starting
16:15:10 (514658): wrapper: running run_atlas (--nthreads 3)
[2025-12-16 16:15:10] Arguments: --nthreads 3
[2025-12-16 16:15:10] Threads: 3
[2025-12-16 16:15:10] Checking for CVMFS
[2025-12-16 16:15:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 16:15:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 16:15:10] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 16:15:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 16:15:11] 2.9.2.0 3564296 4579 86612 154075 1 56 30950987 36864001 0 130560 0 3021372 99.989 168136 7227 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-16 16:15:11] CVMFS is ok
[2025-12-16 16:15:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 16:15:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 16:15:11] Further information can be found at the LHC@home message board.
[2025-12-16 16:15:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 16:15:11] Checking for apptainer binary...
[2025-12-16 16:15:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 16:15:11] Running /usr/bin/apptainer --version
[2025-12-16 16:15:11] apptainer version 1.4.1-1.1
[2025-12-16 16:15:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 16:15:11] thA371b
[2025-12-16 16:15:11] apptainer works
[2025-12-16 16:15:11] Set ATHENA_PROC_NUMBER=3
[2025-12-16 16:15:11] Set ATHENA_CORE_NUMBER=3
[2025-12-16 16:15:11] Starting ATLAS job with PandaID=6930227862
[2025-12-16 16:15:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 18:10:29]  *** The last 200 lines of the pilot log: ***
[2025-12-16 18:10:29] 2025-12-16 17:09:53,162 | INFO     | collected zombie processes
[2025-12-16 18:10:29] 2025-12-16 17:09:53,162 | INFO     | will attempt to kill all subprocesses of pid=524827
[2025-12-16 18:10:29] 2025-12-16 17:09:53,203 | INFO     | process IDs to be killed: [524827] (in reverse order)
[2025-12-16 18:10:29] 2025-12-16 17:09:53,226 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 18:10:29] 2025-12-16 17:09:53,226 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 18:10:29] 2025-12-16 17:09:53,228 | INFO     | did not find any defunct processes belonging to 524827
[2025-12-16 18:10:29] 2025-12-16 17:09:53,229 | INFO     | did not find any defunct processes belonging to 524827
[2025-12-16 18:10:29] 2025-12-16 17:09:53,229 | INFO     | ready for new job
[2025-12-16 18:10:29] 2025-12-16 17:09:53,229 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 18:10:29] 2025-12-16 17:09:53,229 | INFO     | ***************************************
[2025-12-16 18:10:29] 2025-12-16 17:09:53,229 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 18:10:29] 2025-12-16 17:09:53,229 | INFO     | ***************************************
[2025-12-16 18:10:29] 2025-12-16 17:09:53,229 | INFO     | 
[2025-12-16 18:10:29] 2025-12-16 17:09:53,230 | INFO     | architecture information:
[2025-12-16 18:10:29] 2025-12-16 17:09:53,230 | INFO     | executing command: cat /etc/os-release
[2025-12-16 18:10:29] 2025-12-16 17:09:53,238 | INFO     | cat /etc/os-release:
[2025-12-16 18:10:29] NAME="CentOS Linux"
[2025-12-16 18:10:29] VERSION="7 (Core)"
[2025-12-16 18:10:29] ID="centos"
[2025-12-16 18:10:29] ID_LIKE="rhel fedora"
[2025-12-16 18:10:29] VERSION_ID="7"
[2025-12-16 18:10:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 18:10:29] ANSI_COLOR="0;31"
[2025-12-16 18:10:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 18:10:29] HOME_URL="https://www.centos.org/"
[2025-12-16 18:10:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 18:10:29] 
[2025-12-16 18:10:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 18:10:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 18:10:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 18:10:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 18:10:29] 
[2025-12-16 18:10:29] 2025-12-16 17:09:53,238 | INFO     | ***************************************
[2025-12-16 18:10:29] 2025-12-16 17:09:53,741 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-16 18:10:29] 2025-12-16 17:09:53,753 | INFO     | sufficient remaining disk space (228755243008 B)
[2025-12-16 18:10:29] 2025-12-16 17:09:53,753 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 18:10:29] 2025-12-16 17:09:53,753 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 18:10:29] 2025-12-16 17:09:53,753 | INFO     | update_server=False
[2025-12-16 18:10:29] 2025-12-16 17:09:53,753 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 18:10:29] 2025-12-16 17:09:53,753 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 18:10:29] 2025-12-16 17:09:53,753 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 18:10:29] 2025-12-16 17:09:54,120 | INFO     | all payload control threads have been joined
[2025-12-16 18:10:29] 2025-12-16 17:09:54,229 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 18:10:29] 2025-12-16 17:09:54,229 | INFO     | aborting loop
[2025-12-16 18:10:29] 2025-12-16 17:09:54,332 | INFO     | all data control threads have been joined
[2025-12-16 18:10:29] 2025-12-16 17:09:54,540 | INFO     | all job control threads have been joined
[2025-12-16 18:10:29] 2025-12-16 17:09:54,756 | INFO     | [job] retrieve thread has finished
[2025-12-16 18:10:29] 2025-12-16 17:09:54,759 | INFO     | [job] queue monitor thread has finished
[2025-12-16 18:10:29] 2025-12-16 17:09:55,126 | INFO     | [payload] control thread has finished
[2025-12-16 18:10:29] 2025-12-16 17:09:55,187 | INFO     | [payload] validate_post thread has finished
[2025-12-16 18:10:29] 2025-12-16 17:09:55,225 | INFO     | [job] validate thread has finished
[2025-12-16 18:10:29] 2025-12-16 17:09:55,233 | INFO     | [job] job monitor thread has finished
[2025-12-16 18:10:29] 2025-12-16 17:09:55,289 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 18:10:29] 2025-12-16 17:09:55,335 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 18:10:29] 2025-12-16 17:09:55,337 | INFO     | [data] control thread has finished
[2025-12-16 18:10:29] 2025-12-16 17:09:55,546 | INFO     | [job] control thread has finished
[2025-12-16 18:10:29] 2025-12-16 17:09:55,694 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 18:10:29] 2025-12-16 17:09:55,760 | INFO     | [data] copytool_out thread has finished
[2025-12-16 18:10:29] 2025-12-16 17:09:56,224 | INFO     | [data] copytool_in thread has finished
[2025-12-16 18:10:29] 2025-12-16 17:09:56,234 | INFO     | [payload] failed_post thread has finished
[2025-12-16 18:10:29] 2025-12-16 17:09:56,378 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 18:10:29] 2025-12-16 17:10:00,385 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 18:10:29] 2025-12-16 17:10:03,816 | INFO     | job.realtimelogging is not enabled
[2025-12-16 18:10:29] 2025-12-16 17:10:04,822 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 18:10:29] 2025-12-16 17:10:23,519 | INFO     | [monitor] cgroup control has ended
[2025-12-16 18:10:29] 2025-12-16 17:10:24,402 | INFO     | PID=518379 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 18:10:29] 2025-12-16 17:10:24,402 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 18:10:29] 2025-12-16 17:10:24,402 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 18:10:29] 2025-12-16 17:10:24,402 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 18:10:29] 2025-12-16 17:10:24,809 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140592626157376)>', '<ExcThread(monitor, started 140592344434432)>']
[2025-12-16 18:10:29] 2025-12-16 17:10:25,407 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 18:10:29] 2025-12-16 17:10:25,408 | INFO     | [monitor] control thread has ended
[2025-12-16 18:10:29] 2025-12-16 17:10:29,835 | INFO     | all workflow threads have been joined
[2025-12-16 18:10:29] 2025-12-16 17:10:29,835 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 18:10:29] 2025-12-16 17:10:29,835 | INFO     | traces error code: 0
[2025-12-16 18:10:29] 2025-12-16 17:10:29,835 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 18:10:29] 2025-12-16 17:10:29,885 [wrapper] ==== pilot stdout END ====
[2025-12-16 18:10:29] 2025-12-16 17:10:29,887 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 18:10:29] 2025-12-16 17:10:29,890 [wrapper] pilotpid: 518379
[2025-12-16 18:10:29] 2025-12-16 17:10:29,892 [wrapper] Pilot exit status: 0
[2025-12-16 18:10:29] 2025-12-16 17:10:29,899 [wrapper] pandaids: 6930227862
[2025-12-16 18:10:29] 2025-12-16 17:10:29,915 [wrapper] cleanup supervisor_pilot  539184 518380
[2025-12-16 18:10:29] 2025-12-16 17:10:29,917 [wrapper] Test setup, not cleaning
[2025-12-16 18:10:29] 2025-12-16 17:10:29,920 [wrapper] apfmon messages muted
[2025-12-16 18:10:29] 2025-12-16 17:10:29,922 [wrapper] ==== wrapper stdout END ====
[2025-12-16 18:10:29] 2025-12-16 17:10:29,924 [wrapper] ==== wrapper stderr END ====
[2025-12-16 18:10:29]  *** Error codes and diagnostics ***
[2025-12-16 18:10:29]     "exeErrorCode": 0,
[2025-12-16 18:10:29]     "exeErrorDiag": "",
[2025-12-16 18:10:29]     "pilotErrorCode": 0,
[2025-12-16 18:10:29]     "pilotErrorDiag": "",
[2025-12-16 18:10:29]  *** Listing of results directory ***
[2025-12-16 18:10:29] total 437428
[2025-12-16 18:10:29] -rw-r--r-- 1 boinc boinc      5112 Dec 16 03:06 queuedata.json
[2025-12-16 18:10:29] -rw-r--r-- 1 boinc boinc    579449 Dec 16 03:06 pilot3.tar.gz
[2025-12-16 18:10:29] -rwx------ 1 boinc boinc     36322 Dec 16 03:06 runpilot2-wrapper.sh
[2025-12-16 18:10:29] -rw-r--r-- 1 boinc boinc       100 Dec 16 16:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 18:10:29] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 16:15 run_atlas
[2025-12-16 18:10:29] -rw-r--r-- 1 boinc boinc       105 Dec 16 16:15 job.xml
[2025-12-16 18:10:29] -rw-r--r-- 2 boinc boinc 222371071 Dec 16 16:15 EVNT.47898761._000721.pool.root.1
[2025-12-16 18:10:29] drwxrwx--x 2 boinc boinc      4096 Dec 16 16:15 shared
[2025-12-16 18:10:29] -rw-r--r-- 2 boinc boinc    592399 Dec 16 16:15 input.tar.gz
[2025-12-16 18:10:29] -rw-r--r-- 2 boinc boinc     15847 Dec 16 16:15 start_atlas.sh
[2025-12-16 18:10:29] -rw-r--r-- 1 boinc boinc         0 Dec 16 16:15 boinc_setup_complete
[2025-12-16 18:10:29] -rw-r--r-- 1 boinc boinc      6440 Dec 16 16:15 init_data.xml
[2025-12-16 18:10:29] -rw-r--r-- 1 boinc boinc         0 Dec 16 16:15 boinc_lockfile
[2025-12-16 18:10:29] -rw-r--r-- 1 boinc boinc      2508 Dec 16 16:15 pandaJob.out
[2025-12-16 18:10:29] -rw------- 1 boinc boinc    987386 Dec 16 16:15 agis_schedconf.cvmfs.json
[2025-12-16 18:10:29] -rw------- 1 boinc boinc   1516240 Dec 16 16:15 agis_ddmendpoints.agis.ALL.json
[2025-12-16 18:10:29] drwx------ 5 boinc boinc      4096 Dec 16 16:15 pilot3
[2025-12-16 18:10:29] -rw------- 1 boinc boinc 219126154 Dec 16 18:09 HITS.47898763._018135.pool.root.1
[2025-12-16 18:10:29] -rw-r--r-- 1 boinc boinc       529 Dec 16 18:09 boinc_task_state.xml
[2025-12-16 18:10:29] -rw------- 1 boinc boinc      1020 Dec 16 18:09 memory_monitor_summary.json
[2025-12-16 18:10:29] -rw------- 1 boinc boinc    271889 Dec 16 18:09 log.47898763._018135.job.log.tgz.1
[2025-12-16 18:10:29] -rw------- 1 boinc boinc        95 Dec 16 18:09 pilot_heartbeat.json
[2025-12-16 18:10:29] -rw------- 1 boinc boinc      7758 Dec 16 18:09 heartbeat.json
[2025-12-16 18:10:29] -rw-r--r-- 1 boinc boinc      8192 Dec 16 18:10 boinc_mmap_file
[2025-12-16 18:10:29] -rw-r--r-- 1 boinc boinc        27 Dec 16 18:10 wrapper_checkpoint.txt
[2025-12-16 18:10:29] -rw------- 1 boinc boinc      4823 Dec 16 18:10 pilotlog.txt
[2025-12-16 18:10:29] -rw------- 1 boinc boinc    991595 Dec 16 18:10 log.47898763._018135.job.log.1
[2025-12-16 18:10:29] -rw------- 1 boinc boinc       357 Dec 16 18:10 output.list
[2025-12-16 18:10:29] -rw-r--r-- 1 boinc boinc       620 Dec 16 18:10 runtime_log
[2025-12-16 18:10:29] -rw------- 1 boinc boinc   1280000 Dec 16 18:10 result.tar.gz
[2025-12-16 18:10:29] -rw-r--r-- 1 boinc boinc      8902 Dec 16 18:10 runtime_log.err
[2025-12-16 18:10:29] -rw------- 1 boinc boinc       660 Dec 16 18:10 9AKNDmZdZp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZ3YKDmOtPSUo.diag
[2025-12-16 18:10:29] -rw-r--r-- 1 boinc boinc     10369 Dec 16 18:10 stderr.txt
[2025-12-16 18:10:29] HITS file was successfully produced:
[2025-12-16 18:10:29] -rw------- 1 boinc boinc 219126154 Dec 16 18:09 shared/HITS.pool.root.1
[2025-12-16 18:10:29]  *** Contents of shared directory: ***
[2025-12-16 18:10:29] total 433008
[2025-12-16 18:10:29] -rw-r--r-- 2 boinc boinc 222371071 Dec 16 16:15 ATLAS.root_0
[2025-12-16 18:10:29] -rw-r--r-- 2 boinc boinc    592399 Dec 16 16:15 input.tar.gz
[2025-12-16 18:10:29] -rw-r--r-- 2 boinc boinc     15847 Dec 16 16:15 start_atlas.sh
[2025-12-16 18:10:29] -rw------- 1 boinc boinc 219126154 Dec 16 18:09 HITS.pool.root.1
[2025-12-16 18:10:29] -rw------- 1 boinc boinc   1280000 Dec 16 18:10 result.tar.gz
18:10:31 (514658): run_atlas exited; CPU time 19945.156755
18:10:31 (514658): called boinc_finish(0)

</stderr_txt>
]]>

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