Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:24:02 (2174306): wrapper (7.7.26015): starting
00:24:02 (2174306): wrapper: running run_atlas (--nthreads 12)
[2025-12-16 00:24:02] Arguments: --nthreads 12
[2025-12-16 00:24:02] Threads: 12
[2025-12-16 00:24:02] Checking for CVMFS
[2025-12-16 00:24:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 00:24:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 00:24:03] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 00:24:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 00:24:03] 2.13.2.0 7528 61286 163856 154060 3 374 34552679 40960001 19468 16776704 0 157311015 99.752 104068661 41706 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 00:24:03] CVMFS is ok
[2025-12-16 00:24:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 00:24:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 00:24:03] Further information can be found at the LHC@home message board.
[2025-12-16 00:24:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 00:24:03] Checking for apptainer binary...
[2025-12-16 00:24:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 00:24:03] Running /usr/bin/apptainer --version
[2025-12-16 00:24:03] apptainer version 1.4.4-1.el9
[2025-12-16 00:24:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 00:24:03] c-212-9.aglt2.org
[2025-12-16 00:24:03] apptainer works
[2025-12-16 00:24:03] Set ATHENA_PROC_NUMBER=12
[2025-12-16 00:24:03] Set ATHENA_CORE_NUMBER=12
[2025-12-16 00:24:03] Starting ATLAS job with PandaID=6929784004
[2025-12-16 00:24:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 07:08:25]  *** The last 200 lines of the pilot log: ***
[2025-12-16 07:08:25] 2025-12-16 12:07:52,062 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 07:08:25] 2025-12-16 12:07:52,067 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3075.8619374999994
[2025-12-16 07:08:25] 2025-12-16 12:07:52,081 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6929784004/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 07:08:25] 2025-12-16 12:07:52,086 | INFO     | extracted standard info from prmon json
[2025-12-16 07:08:25] 2025-12-16 12:07:52,087 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 07:08:25] 2025-12-16 12:07:52,087 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 07:08:25] 2025-12-16 12:07:52,087 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 07:08:25] 2025-12-16 12:07:52,087 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 07:08:25] 2025-12-16 12:07:52,092 | INFO     | fitting pss+swap vs Time
[2025-12-16 07:08:25] 2025-12-16 12:07:52,092 | INFO     | sum of square deviations: 19401018305.924404
[2025-12-16 07:08:25] 2025-12-16 12:07:52,095 | INFO     | sum of deviations: -71605306034.26448
[2025-12-16 07:08:25] 2025-12-16 12:07:52,095 | INFO     | mean x: 1765874777.1335013
[2025-12-16 07:08:25] 2025-12-16 12:07:52,104 | INFO     | mean y: 2695825.967254408
[2025-12-16 07:08:25] 2025-12-16 12:07:52,104 | INFO     | intersect: 6520188971.995609
[2025-12-16 07:08:25] 2025-12-16 12:07:52,105 | INFO     | chi2: 2.41153028462127
[2025-12-16 07:08:25] 2025-12-16 12:07:52,105 | INFO     | sum of square deviations: 18677151130.834145
[2025-12-16 07:08:25] 2025-12-16 12:07:52,108 | INFO     | sum of deviations: -41938289808.75766
[2025-12-16 07:08:25] 2025-12-16 12:07:52,108 | INFO     | mean x: 1765874624.635204
[2025-12-16 07:08:25] 2025-12-16 12:07:52,108 | INFO     | mean y: 2702012.5331632653
[2025-12-16 07:08:25] 2025-12-16 12:07:52,108 | INFO     | intersect: 3967855009.1066203
[2025-12-16 07:08:25] 2025-12-16 12:07:52,109 | INFO     | chi2: 1.5782080437485477
[2025-12-16 07:08:25] 2025-12-16 12:07:52,109 | INFO     | current chi2=1.5782080437485477 (change=34.55574438301509 %)
[2025-12-16 07:08:25] 2025-12-16 12:07:52,109 | INFO     | sum of square deviations: 17971516855.741592
[2025-12-16 07:08:25] 2025-12-16 12:07:52,112 | INFO     | sum of deviations: -42180663916.13446
[2025-12-16 07:08:25] 2025-12-16 12:07:52,112 | INFO     | mean x: 1765874472.136951
[2025-12-16 07:08:25] 2025-12-16 12:07:52,112 | INFO     | mean y: 2701960.19121447
[2025-12-16 07:08:25] 2025-12-16 12:07:52,112 | INFO     | intersect: 4147358097.1879725
[2025-12-16 07:08:25] 2025-12-16 12:07:52,112 | INFO     | chi2: 1.5766658423006639
[2025-12-16 07:08:25] 2025-12-16 12:07:52,112 | INFO     | current chi2=1.5766658423006639 (change=0.09771851398126429 %)
[2025-12-16 07:08:25] 2025-12-16 12:07:52,113 | INFO     | right removable region: 386
[2025-12-16 07:08:25] 2025-12-16 12:07:52,113 | INFO     | sum of square deviations: 18677118800.834145
[2025-12-16 07:08:25] 2025-12-16 12:07:52,116 | INFO     | sum of deviations: -129473579625.63518
[2025-12-16 07:08:25] 2025-12-16 12:07:52,116 | INFO     | mean x: 1765874929.635204
[2025-12-16 07:08:25] 2025-12-16 12:07:52,116 | INFO     | mean y: 2707940.0025510206
[2025-12-16 07:08:25] 2025-12-16 12:07:52,116 | INFO     | intersect: 12244111485.651434
[2025-12-16 07:08:25] 2025-12-16 12:07:52,117 | INFO     | chi2: 1.1288659376383043
[2025-12-16 07:08:25] 2025-12-16 12:07:52,117 | INFO     | current chi2=1.1288659376383043 (change=53.18881355804361 %)
[2025-12-16 07:08:25] 2025-12-16 12:07:52,117 | INFO     | sum of square deviations: 17971452195.741592
[2025-12-16 07:08:25] 2025-12-16 12:07:52,120 | INFO     | sum of deviations: -118902615520.90968
[2025-12-16 07:08:25] 2025-12-16 12:07:52,120 | INFO     | mean x: 1765875082.136951
[2025-12-16 07:08:25] 2025-12-16 12:07:52,120 | INFO     | mean y: 2705649.6020671832
[2025-12-16 07:08:25] 2025-12-16 12:07:52,120 | INFO     | intersect: 11686077903.683865
[2025-12-16 07:08:25] 2025-12-16 12:07:52,120 | INFO     | chi2: 1.1172682365847801
[2025-12-16 07:08:25] 2025-12-16 12:07:52,120 | INFO     | current chi2=1.1172682365847801 (change=1.0273762956997092 %)
[2025-12-16 07:08:25] 2025-12-16 12:07:52,120 | INFO     | left removable region: 20
[2025-12-16 07:08:25] 2025-12-16 12:07:52,121 | INFO     | sum of square deviations: 15201692009.204863
[2025-12-16 07:08:25] 2025-12-16 12:07:52,123 | INFO     | sum of deviations: -64619511474.36069
[2025-12-16 07:08:25] 2025-12-16 12:07:52,123 | INFO     | mean x: 1765875051.6311476
[2025-12-16 07:08:25] 2025-12-16 12:07:52,123 | INFO     | mean y: 2706435.049180328
[2025-12-16 07:08:25] 2025-12-16 12:07:52,124 | INFO     | intersect: 7509106583.932004
[2025-12-16 07:08:25] 2025-12-16 12:07:52,124 | INFO     | chi2: 0.23679495367050546
[2025-12-16 07:08:25] 2025-12-16 12:07:52,124 | INFO     | current memory leak: -4.25 B/s (using 366 data points, chi2=0.24)
[2025-12-16 07:08:25] 2025-12-16 12:07:52,125 | INFO     | could have reported an average CPU frequency of 3093 MHz (17 samples)
[2025-12-16 07:08:25] 2025-12-16 12:07:52,125 | INFO     | ..............................
[2025-12-16 07:08:25] 2025-12-16 12:07:52,125 | INFO     | . Timing measurements:
[2025-12-16 07:08:25] 2025-12-16 12:07:52,125 | INFO     | . get job = 0 s
[2025-12-16 07:08:25] 2025-12-16 12:07:52,125 | INFO     | . initial setup = 2 s
[2025-12-16 07:08:25] 2025-12-16 12:07:52,125 | INFO     | . payload setup = 12 s
[2025-12-16 07:08:25] 2025-12-16 12:07:52,125 | INFO     | . stage-in = 0 s
[2025-12-16 07:08:25] 2025-12-16 12:07:52,125 | INFO     | . payload execution = 24165 s
[2025-12-16 07:08:25] 2025-12-16 12:07:52,125 | INFO     | . stage-out = 2 s
[2025-12-16 07:08:25] 2025-12-16 12:07:52,125 | INFO     | . log creation = 0 s
[2025-12-16 07:08:25] 2025-12-16 12:07:52,125 | INFO     | ..............................
[2025-12-16 07:08:25] 2025-12-16 12:07:52,231 | INFO     | 
[2025-12-16 07:08:25] 2025-12-16 12:07:52,231 | INFO     | job summary report
[2025-12-16 07:08:25] 2025-12-16 12:07:52,231 | INFO     | --------------------------------------------------
[2025-12-16 07:08:25] 2025-12-16 12:07:52,231 | INFO     | PanDA job id: 6929784004
[2025-12-16 07:08:25] 2025-12-16 12:07:52,231 | INFO     | task id: 47898763
[2025-12-16 07:08:25] 2025-12-16 12:07:52,231 | INFO     | errors: (none)
[2025-12-16 07:08:25] 2025-12-16 12:07:52,231 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 07:08:25] 2025-12-16 12:07:52,231 | INFO     | pilot state: finished 
[2025-12-16 07:08:25] 2025-12-16 12:07:52,231 | INFO     | transexitcode: 0
[2025-12-16 07:08:25] 2025-12-16 12:07:52,232 | INFO     | exeerrorcode: 0
[2025-12-16 07:08:25] 2025-12-16 12:07:52,232 | INFO     | exeerrordiag: 
[2025-12-16 07:08:25] 2025-12-16 12:07:52,232 | INFO     | exitcode: 0
[2025-12-16 07:08:25] 2025-12-16 12:07:52,232 | INFO     | exitmsg: OK
[2025-12-16 07:08:25] 2025-12-16 12:07:52,232 | INFO     | cpuconsumptiontime: 50133 s
[2025-12-16 07:08:25] 2025-12-16 12:07:52,232 | INFO     | nevents: 400
[2025-12-16 07:08:25] 2025-12-16 12:07:52,232 | INFO     | neventsw: 0
[2025-12-16 07:08:25] 2025-12-16 12:07:52,232 | INFO     | pid: 2192212
[2025-12-16 07:08:25] 2025-12-16 12:07:52,232 | INFO     | pgrp: 2192212
[2025-12-16 07:08:25] 2025-12-16 12:07:52,232 | INFO     | corecount: 12
[2025-12-16 07:08:25] 2025-12-16 12:07:52,232 | INFO     | event service: False
[2025-12-16 07:08:25] 2025-12-16 12:07:52,232 | INFO     | sizes: {0: 2283787, 1: 2283986, 8: 2284248, 11: 2284276, 24181: 2319659, 24184: 2328841, 24193: 2329043}
[2025-12-16 07:08:25] 2025-12-16 12:07:52,232 | INFO     | --------------------------------------------------
[2025-12-16 07:08:25] 2025-12-16 12:07:52,232 | INFO     | 
[2025-12-16 07:08:25] 2025-12-16 12:07:52,233 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-16 07:08:25] 2025-12-16 12:07:52,268 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 07:08:25] 2025-12-16 12:07:52,268 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 07:08:25] 2025-12-16 12:07:52,268 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 07:08:25] 2025-12-16 12:07:52,268 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 07:08:25] 2025-12-16 12:07:52,268 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 07:08:25] 2025-12-16 12:07:52,269 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 07:08:25] 2025-12-16 12:07:52,269 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 07:08:25] 2025-12-16 12:07:52,269 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 07:08:25] 2025-12-16 12:07:52,269 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 07:08:25] 2025-12-16 12:07:52,269 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 07:08:25] 2025-12-16 12:07:52,269 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 07:08:25] 2025-12-16 12:07:52,269 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 07:08:25] 2025-12-16 12:07:52,269 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 07:08:25] 2025-12-16 12:07:52,269 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 07:08:25] 2025-12-16 12:07:52,269 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 07:08:25] 2025-12-16 12:07:52,269 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 07:08:25] 2025-12-16 12:07:52,269 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 07:08:25] 2025-12-16 12:07:52,270 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 07:08:25] 2025-12-16 12:07:52,270 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 07:08:25] 2025-12-16 12:07:52,270 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 07:08:25] 2025-12-16 12:07:52,270 | INFO     | job 6929784004 has completed (purged errors)
[2025-12-16 07:08:25] 2025-12-16 12:07:52,270 | INFO     | overall cleanup function is called
[2025-12-16 07:08:25] 2025-12-16 12:07:52,459 | INFO     | PID=2183484 has CPU usage=9.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 07:08:25] 2025-12-16 12:07:52,460 | INFO     | .. there are 17 such processes running
[2025-12-16 07:08:25] 2025-12-16 12:07:53,283 | INFO     | --- collectZombieJob: --- 10, [2192212]
[2025-12-16 07:08:25] 2025-12-16 12:07:53,283 | INFO     | zombie collector waiting for pid 2192212
[2025-12-16 07:08:25] 2025-12-16 12:07:53,284 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 07:08:25] 2025-12-16 12:07:53,284 | INFO     | collected zombie processes
[2025-12-16 07:08:25] 2025-12-16 12:07:53,284 | INFO     | will attempt to kill all subprocesses of pid=2192212
[2025-12-16 07:08:25] 2025-12-16 12:07:53,663 | INFO     | process IDs to be killed: [2192212] (in reverse order)
[2025-12-16 07:08:25] 2025-12-16 12:07:54,121 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 07:08:25] 2025-12-16 12:07:54,122 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 07:08:25] 2025-12-16 12:07:54,134 | INFO     | did not find any defunct processes belonging to 2192212
[2025-12-16 07:08:25] 2025-12-16 12:07:54,148 | INFO     | did not find any defunct processes belonging to 2192212
[2025-12-16 07:08:25] 2025-12-16 12:07:54,148 | INFO     | ready for new job
[2025-12-16 07:08:25] 2025-12-16 12:07:54,149 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 07:08:25] 2025-12-16 12:07:54,154 | INFO     | ***************************************
[2025-12-16 07:08:25] 2025-12-16 12:07:54,154 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 07:08:25] 2025-12-16 12:07:54,154 | INFO     | ***************************************
[2025-12-16 07:08:25] 2025-12-16 12:07:54,154 | INFO     | 
[2025-12-16 07:08:25] 2025-12-16 12:07:54,159 | INFO     | architecture information:
[2025-12-16 07:08:25] 2025-12-16 12:07:54,159 | INFO     | executing command: cat /etc/os-release
[2025-12-16 07:08:25] 2025-12-16 12:07:54,185 | INFO     | cat /etc/os-release:
[2025-12-16 07:08:25] NAME="CentOS Linux"
[2025-12-16 07:08:25] VERSION="7 (Core)"
[2025-12-16 07:08:25] ID="centos"
[2025-12-16 07:08:25] ID_LIKE="rhel fedora"
[2025-12-16 07:08:25] VERSION_ID="7"
[2025-12-16 07:08:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 07:08:25] ANSI_COLOR="0;31"
[2025-12-16 07:08:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 07:08:25] HOME_URL="https://www.centos.org/"
[2025-12-16 07:08:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 07:08:25] 
[2025-12-16 07:08:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 07:08:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 07:08:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 07:08:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 07:08:25] 
[2025-12-16 07:08:25] 2025-12-16 12:07:54,185 | INFO     | ***************************************
[2025-12-16 07:08:25] 2025-12-16 12:07:54,688 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-16 07:08:25] 2025-12-16 12:07:54,706 | INFO     | sufficient remaining disk space (127702925312 B)
[2025-12-16 07:08:25] 2025-12-16 12:07:54,707 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 07:08:25] 2025-12-16 12:07:54,707 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 07:08:25] 2025-12-16 12:07:54,707 | INFO     | update_server=False
[2025-12-16 07:08:25] 2025-12-16 12:07:54,707 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 07:08:25] 2025-12-16 12:07:54,707 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 07:08:25] 2025-12-16 12:07:54,708 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 07:08:25] 2025-12-16 12:07:54,708 | INFO     | aborting loop
[2025-12-16 07:08:25] 2025-12-16 12:07:54,782 | INFO     | all data control threads have been joined
[2025-12-16 07:08:25] 2025-12-16 12:07:55,713 | INFO     | [job] retrieve thread has finished
[2025-12-16 07:08:25] 2025-12-16 12:07:55,717 | INFO     | [job] job monitor thread has finished
[2025-12-16 07:08:25] 2025-12-16 12:07:55,788 | INFO     | [data] control thread has finished
[2025-12-16 07:08:25] 2025-12-16 12:07:55,835 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 07:08:25] 2025-12-16 12:07:55,893 | INFO     | all payload control threads have been joined
[2025-12-16 07:08:25] 2025-12-16 12:07:55,994 | INFO     | all job control threads have been joined
[2025-12-16 07:08:25] 2025-12-16 12:07:56,040 | INFO     | [payload] validate_post thread has finished
[2025-12-16 07:08:25] 2025-12-16 12:07:56,205 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 07:08:25] 2025-12-16 12:07:56,310 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 07:08:25] 2025-12-16 12:07:56,432 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 07:08:25] 2025-12-16 12:07:56,433 | INFO     | [data] copytool_in thread has finished
[2025-12-16 07:08:25] 2025-12-16 12:07:56,504 | INFO     | [payload] failed_post thread has finished
[2025-12-16 07:08:25] 2025-12-16 12:07:56,601 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 07:08:25] 2025-12-16 12:07:56,624 | INFO     | [job] validate thread has finished
[2025-12-16 07:08:25] 2025-12-16 12:07:56,899 | INFO     | [payload] control thread has finished
[2025-12-16 07:08:25] 2025-12-16 12:07:57,000 | INFO     | [job] control thread has finished
[2025-12-16 07:08:25] 2025-12-16 12:07:57,245 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 07:08:25] 2025-12-16 12:07:58,212 | INFO     | [data] copytool_out thread has finished
[2025-12-16 07:08:25] 2025-12-16 12:07:58,251 | INFO     | [job] queue monitor thread has finished
[2025-12-16 07:08:25] 2025-12-16 12:07:58,716 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 07:08:25] 2025-12-16 12:08:00,753 | INFO     | [monitor] cgroup control has ended
[2025-12-16 07:08:25] 2025-12-16 12:08:01,759 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140005404682048)>', '<ExcThread(monitor, started 140004927993600)>']
[2025-12-16 07:08:25] 2025-12-16 12:08:06,788 | INFO     | all workflow threads have been joined
[2025-12-16 07:08:25] 2025-12-16 12:08:06,790 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 07:08:25] 2025-12-16 12:08:06,790 | INFO     | traces error code: 0
[2025-12-16 07:08:25] 2025-12-16 12:08:06,790 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 07:08:25] 2025-12-16 12:08:24,965 | INFO     | PID=2183484 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 07:08:25] 2025-12-16 12:08:24,965 | INFO     | .. there are 17 such processes running
[2025-12-16 07:08:25] 2025-12-16 12:08:24,966 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 07:08:25] 2025-12-16 12:08:24,966 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 07:08:25] 2025-12-16 12:08:24,966 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 07:08:25] 2025-12-16 12:08:24,966 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 07:08:25] 2025-12-16 12:08:24,966 | INFO     | [monitor] control thread has ended
[2025-12-16 07:08:25] 2025-12-16 12:08:25,065 [wrapper] ==== pilot stdout END ====
[2025-12-16 07:08:25] 2025-12-16 12:08:25,067 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 07:08:25] 2025-12-16 12:08:25,075 [wrapper] pilotpid: 2183484
[2025-12-16 07:08:25] 2025-12-16 12:08:25,091 [wrapper] Pilot exit status: 0
[2025-12-16 07:08:25] 2025-12-16 12:08:25,239 [wrapper] pandaids: 6929784004
[2025-12-16 07:08:25] 2025-12-16 12:08:25,365 [wrapper] cleanup supervisor_pilot 3111868 2183485
[2025-12-16 07:08:25] 2025-12-16 12:08:25,368 [wrapper] Test setup, not cleaning
[2025-12-16 07:08:25] 2025-12-16 12:08:25,371 [wrapper] apfmon messages muted
[2025-12-16 07:08:25] 2025-12-16 12:08:25,374 [wrapper] ==== wrapper stdout END ====
[2025-12-16 07:08:25] 2025-12-16 12:08:25,376 [wrapper] ==== wrapper stderr END ====
[2025-12-16 07:08:25]  *** Error codes and diagnostics ***
[2025-12-16 07:08:25]     "exeErrorCode": 0,
[2025-12-16 07:08:25]     "exeErrorDiag": "",
[2025-12-16 07:08:25]     "pilotErrorCode": 0,
[2025-12-16 07:08:25]     "pilotErrorDiag": "",
[2025-12-16 07:08:25]  *** Listing of results directory ***
[2025-12-16 07:08:25] total 441456
[2025-12-16 07:08:25] -rw-r--r--. 1 boincer umatlas    579449 Dec 15 08:27 pilot3.tar.gz
[2025-12-16 07:08:25] -rwx------. 1 boincer umatlas     36322 Dec 15 08:27 runpilot2-wrapper.sh
[2025-12-16 07:08:25] -rw-r--r--. 1 boincer umatlas      5112 Dec 15 08:27 queuedata.json
[2025-12-16 07:08:25] -rw-r--r--. 1 boincer umatlas       100 Dec 16 00:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 07:08:25] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 16 00:24 run_atlas
[2025-12-16 07:08:25] -rw-r--r--. 1 boincer umatlas       105 Dec 16 00:24 job.xml
[2025-12-16 07:08:25] -rw-r--r--. 2 boincer umatlas 223823519 Dec 16 00:24 EVNT.47898761._000677.pool.root.1
[2025-12-16 07:08:25] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 00:24 start_atlas.sh
[2025-12-16 07:08:25] drwxrwx--x. 2 boincer umatlas      4096 Dec 16 00:24 shared
[2025-12-16 07:08:25] -rw-r--r--. 2 boincer umatlas    592399 Dec 16 00:24 input.tar.gz
[2025-12-16 07:08:25] -rw-r--r--. 1 boincer umatlas         0 Dec 16 00:24 boinc_lockfile
[2025-12-16 07:08:25] -rw-r--r--. 1 boincer umatlas      2508 Dec 16 00:24 pandaJob.out
[2025-12-16 07:08:25] -rw-------. 1 boincer umatlas        57 Dec 16 00:24 setup.sh.local
[2025-12-16 07:08:25] -rw-------. 1 boincer umatlas    994531 Dec 16 00:24 agis_schedconf.cvmfs.json
[2025-12-16 07:08:25] drwx------. 5 boincer umatlas      4096 Dec 16 00:24 pilot3
[2025-12-16 07:08:25] -rw-r--r--. 1 boincer umatlas      6948 Dec 16 07:04 init_data.xml
[2025-12-16 07:08:25] -rw-------. 1 boincer umatlas 216484810 Dec 16 07:07 HITS.47898763._016950.pool.root.1
[2025-12-16 07:08:25] -rw-r--r--. 1 boincer umatlas       530 Dec 16 07:07 boinc_task_state.xml
[2025-12-16 07:08:25] -rw-------. 1 boincer umatlas      1041 Dec 16 07:07 memory_monitor_summary.json
[2025-12-16 07:08:25] -rw-------. 1 boincer umatlas   1516240 Dec 16 07:07 agis_ddmendpoints.agis.ALL.json
[2025-12-16 07:08:25] -rw-------. 1 boincer umatlas    664825 Dec 16 07:07 log.47898763._016950.job.log.tgz.1
[2025-12-16 07:08:25] -rw-------. 1 boincer umatlas      7781 Dec 16 07:07 heartbeat.json
[2025-12-16 07:08:25] -rw-r--r--. 1 boincer umatlas        28 Dec 16 07:08 wrapper_checkpoint.txt
[2025-12-16 07:08:25] -rw-r--r--. 1 boincer umatlas      8192 Dec 16 07:08 boinc_mmap_file
[2025-12-16 07:08:25] -rw-------. 1 boincer umatlas        95 Dec 16 07:08 pilot_heartbeat.json
[2025-12-16 07:08:25] -rw-------. 1 boincer umatlas       823 Dec 16 07:08 pilotlog.txt
[2025-12-16 07:08:25] -rw-------. 1 boincer umatlas   3247187 Dec 16 07:08 log.47898763._016950.job.log.1
[2025-12-16 07:08:25] -rw-------. 1 boincer umatlas       357 Dec 16 07:08 output.list
[2025-12-16 07:08:25] -rw-r--r--. 1 boincer umatlas       620 Dec 16 07:08 runtime_log
[2025-12-16 07:08:25] -rw-------. 1 boincer umatlas   3932160 Dec 16 07:08 result.tar.gz
[2025-12-16 07:08:25] -rw-r--r--. 1 boincer umatlas      9340 Dec 16 07:08 runtime_log.err
[2025-12-16 07:08:25] -rw-------. 1 boincer umatlas       657 Dec 16 07:08 cNjNDmrmNp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmk0XKDmNt3FUn.diag
[2025-12-16 07:08:25] -rw-r--r--. 1 boincer umatlas     21259 Dec 16 07:08 stderr.txt
[2025-12-16 07:08:25] HITS file was successfully produced:
[2025-12-16 07:08:25] -rw-------. 1 boincer umatlas 216484810 Dec 16 07:07 shared/HITS.pool.root.1
[2025-12-16 07:08:25]  *** Contents of shared directory: ***
[2025-12-16 07:08:25] total 434436
[2025-12-16 07:08:25] -rw-r--r--. 2 boincer umatlas 223823519 Dec 16 00:24 ATLAS.root_0
[2025-12-16 07:08:25] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 00:24 start_atlas.sh
[2025-12-16 07:08:25] -rw-r--r--. 2 boincer umatlas    592399 Dec 16 00:24 input.tar.gz
[2025-12-16 07:08:25] -rw-------. 1 boincer umatlas 216484810 Dec 16 07:07 HITS.pool.root.1
[2025-12-16 07:08:25] -rw-------. 1 boincer umatlas   3932160 Dec 16 07:08 result.tar.gz
07:08:27 (2174306): run_atlas exited; CPU time 50925.608885
07:08:27 (2174306): called boinc_finish(0)

</stderr_txt>
]]>

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