Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:22:35 (537185): wrapper (7.7.26015): starting
02:22:35 (537185): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 02:22:35] Arguments: --nthreads 8
[2025-12-16 02:22:35] Threads: 8
[2025-12-16 02:22:35] Checking for CVMFS
[2025-12-16 02:22:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 02:22:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 02:22:36] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 02:22:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 02:22:37] 2.13.3.0 13031 58542 415620 154061 3 776 30793460 32935937 25851 16776704 0 298355777 99.503 381458424 34494 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-16 02:22:37] CVMFS is ok
[2025-12-16 02:22:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 02:22:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 02:22:38] Further information can be found at the LHC@home message board.
[2025-12-16 02:22:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 02:22:38] Checking for apptainer binary...
[2025-12-16 02:22:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 02:22:38] Running /usr/bin/apptainer --version
[2025-12-16 02:22:38] apptainer version 1.4.5-2.el9
[2025-12-16 02:22:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 02:22:38] c6-2-11-4.aglt2.org
[2025-12-16 02:22:38] apptainer works
[2025-12-16 02:22:38] Set ATHENA_PROC_NUMBER=8
[2025-12-16 02:22:38] Set ATHENA_CORE_NUMBER=8
[2025-12-16 02:22:38] Starting ATLAS job with PandaID=6929435572
[2025-12-16 02:22:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 07:27:35]  *** The last 200 lines of the pilot log: ***
[2025-12-16 07:27:35] 2025-12-16 12:26:53,837 | INFO     | monitor loop #1108: job 0:6929435572 is in state 'finished'
[2025-12-16 07:27:35] 2025-12-16 12:26:53,838 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 07:27:35] 2025-12-16 12:26:53,964 | INFO     | time since job start (18192s) is within the limit (174528.0s)
[2025-12-16 07:27:35] 2025-12-16 12:26:55,989 | INFO     | time since job start (18194s) is within the limit (174528.0s)
[2025-12-16 07:27:35] 2025-12-16 12:26:56,352 | INFO     | monitor loop #1109: job 0:6929435572 is in state 'finished'
[2025-12-16 07:27:35] 2025-12-16 12:26:56,353 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 07:27:35] 2025-12-16 12:26:57,001 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-16 07:27:35] 2025-12-16 12:26:57,013 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2673.087208333334
[2025-12-16 07:27:35] 2025-12-16 12:26:57,031 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6929435572/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 07:27:35] 2025-12-16 12:26:57,031 | INFO     | extracted standard info from prmon json
[2025-12-16 07:27:35] 2025-12-16 12:26:57,032 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 07:27:35] 2025-12-16 12:26:57,032 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 07:27:35] 2025-12-16 12:26:57,032 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 07:27:35] 2025-12-16 12:26:57,032 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 07:27:35] 2025-12-16 12:26:57,037 | INFO     | fitting pss+swap vs Time
[2025-12-16 07:27:35] 2025-12-16 12:26:57,038 | INFO     | sum of square deviations: 8042011936.486479
[2025-12-16 07:27:35] 2025-12-16 12:26:57,040 | INFO     | sum of deviations: 74609779608.56766
[2025-12-16 07:27:35] 2025-12-16 12:26:57,041 | INFO     | mean x: 1765878942.7432432
[2025-12-16 07:27:35] 2025-12-16 12:26:57,041 | INFO     | mean y: 2475620.2837837837
[2025-12-16 07:27:35] 2025-12-16 12:26:57,041 | INFO     | intersect: -16380469316.135408
[2025-12-16 07:27:35] 2025-12-16 12:26:57,041 | INFO     | chi2: 3.4097442987407858
[2025-12-16 07:27:35] 2025-12-16 12:26:57,042 | INFO     | sum of square deviations: 7641266693.573921
[2025-12-16 07:27:35] 2025-12-16 12:26:57,044 | INFO     | sum of deviations: 91552228116.82817
[2025-12-16 07:27:35] 2025-12-16 12:26:57,044 | INFO     | mean x: 1765878790.2302406
[2025-12-16 07:27:35] 2025-12-16 12:26:57,044 | INFO     | mean y: 2481971.883161512
[2025-12-16 07:27:35] 2025-12-16 12:26:57,044 | INFO     | intersect: -21155022969.77623
[2025-12-16 07:27:35] 2025-12-16 12:26:57,045 | INFO     | chi2: 2.732571350420104
[2025-12-16 07:27:35] 2025-12-16 12:26:57,045 | INFO     | current chi2=2.732571350420104 (change=19.85993344341864 %)
[2025-12-16 07:27:35] 2025-12-16 12:26:57,045 | INFO     | right removable region: 290
[2025-12-16 07:27:35] 2025-12-16 12:26:57,045 | INFO     | sum of square deviations: 7641312696.18555
[2025-12-16 07:27:35] 2025-12-16 12:26:57,047 | INFO     | sum of deviations: 1895120783.4226723
[2025-12-16 07:27:35] 2025-12-16 12:26:57,048 | INFO     | mean x: 1765879095.2474227
[2025-12-16 07:27:35] 2025-12-16 12:26:57,048 | INFO     | mean y: 2503194.23024055
[2025-12-16 07:27:35] 2025-12-16 12:26:57,048 | INFO     | intersect: -435452207.8678276
[2025-12-16 07:27:35] 2025-12-16 12:26:57,048 | INFO     | chi2: 0.8991622507742432
[2025-12-16 07:27:35] 2025-12-16 12:26:57,048 | INFO     | current chi2=0.8991622507742432 (change=73.62962814817807 %)
[2025-12-16 07:27:35] 2025-12-16 12:26:57,049 | INFO     | sum of square deviations: 7254166099.874151
[2025-12-16 07:27:35] 2025-12-16 12:26:57,051 | INFO     | sum of deviations: -14840170295.629374
[2025-12-16 07:27:35] 2025-12-16 12:26:57,051 | INFO     | mean x: 1765879247.7482517
[2025-12-16 07:27:35] 2025-12-16 12:26:57,051 | INFO     | mean y: 2509759.7412587414
[2025-12-16 07:27:35] 2025-12-16 12:26:57,051 | INFO     | intersect: 3615047492.8594155
[2025-12-16 07:27:35] 2025-12-16 12:26:57,052 | INFO     | chi2: 0.7640619107037465
[2025-12-16 07:27:35] 2025-12-16 12:26:57,052 | INFO     | current chi2=0.7640619107037465 (change=15.025134780087306 %)
[2025-12-16 07:27:35] 2025-12-16 12:26:57,052 | INFO     | left removable region: 20
[2025-12-16 07:27:35] 2025-12-16 12:26:57,053 | INFO     | sum of square deviations: 6103458002.32962
[2025-12-16 07:27:35] 2025-12-16 12:26:57,055 | INFO     | sum of deviations: -10043265791.088888
[2025-12-16 07:27:35] 2025-12-16 12:26:57,055 | INFO     | mean x: 1765879369.737037
[2025-12-16 07:27:35] 2025-12-16 12:26:57,055 | INFO     | mean y: 2522487.688888889
[2025-12-16 07:27:35] 2025-12-16 12:26:57,055 | INFO     | intersect: 2908284411.257507
[2025-12-16 07:27:35] 2025-12-16 12:26:57,055 | INFO     | chi2: 0.010720369591938205
[2025-12-16 07:27:35] 2025-12-16 12:26:57,055 | INFO     | current memory leak: -1.65 B/s (using 270 data points, chi2=0.01)
[2025-12-16 07:27:35] 2025-12-16 12:26:57,056 | INFO     | could have reported an average CPU frequency of 2638 MHz (13 samples)
[2025-12-16 07:27:35] 2025-12-16 12:26:57,056 | INFO     | ..............................
[2025-12-16 07:27:35] 2025-12-16 12:26:57,056 | INFO     | . Timing measurements:
[2025-12-16 07:27:35] 2025-12-16 12:26:57,056 | INFO     | . get job = 0 s
[2025-12-16 07:27:35] 2025-12-16 12:26:57,056 | INFO     | . initial setup = 5 s
[2025-12-16 07:27:35] 2025-12-16 12:26:57,057 | INFO     | . payload setup = 36 s
[2025-12-16 07:27:35] 2025-12-16 12:26:57,057 | INFO     | . stage-in = 0 s
[2025-12-16 07:27:35] 2025-12-16 12:26:57,057 | INFO     | . payload execution = 18058 s
[2025-12-16 07:27:35] 2025-12-16 12:26:57,057 | INFO     | . stage-out = 5 s
[2025-12-16 07:27:35] 2025-12-16 12:26:57,057 | INFO     | . log creation = 0 s
[2025-12-16 07:27:35] 2025-12-16 12:26:57,057 | INFO     | ..............................
[2025-12-16 07:27:35] 2025-12-16 12:26:57,879 | INFO     | 
[2025-12-16 07:27:35] 2025-12-16 12:26:57,880 | INFO     | job summary report
[2025-12-16 07:27:35] 2025-12-16 12:26:57,880 | INFO     | --------------------------------------------------
[2025-12-16 07:27:35] 2025-12-16 12:26:57,880 | INFO     | PanDA job id: 6929435572
[2025-12-16 07:27:35] 2025-12-16 12:26:57,880 | INFO     | task id: 47898763
[2025-12-16 07:27:35] 2025-12-16 12:26:57,880 | INFO     | errors: (none)
[2025-12-16 07:27:35] 2025-12-16 12:26:57,880 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 07:27:35] 2025-12-16 12:26:57,880 | INFO     | pilot state: finished 
[2025-12-16 07:27:35] 2025-12-16 12:26:57,880 | INFO     | transexitcode: 0
[2025-12-16 07:27:35] 2025-12-16 12:26:57,880 | INFO     | exeerrorcode: 0
[2025-12-16 07:27:35] 2025-12-16 12:26:57,880 | INFO     | exeerrordiag: 
[2025-12-16 07:27:35] 2025-12-16 12:26:57,881 | INFO     | exitcode: 0
[2025-12-16 07:27:35] 2025-12-16 12:26:57,881 | INFO     | exitmsg: OK
[2025-12-16 07:27:35] 2025-12-16 12:26:57,881 | INFO     | cpuconsumptiontime: 61257 s
[2025-12-16 07:27:35] 2025-12-16 12:26:57,881 | INFO     | nevents: 400
[2025-12-16 07:27:35] 2025-12-16 12:26:57,881 | INFO     | neventsw: 0
[2025-12-16 07:27:35] 2025-12-16 12:26:57,881 | INFO     | pid: 552263
[2025-12-16 07:27:35] 2025-12-16 12:26:57,881 | INFO     | pgrp: 552263
[2025-12-16 07:27:35] 2025-12-16 12:26:57,881 | INFO     | corecount: 8
[2025-12-16 07:27:35] 2025-12-16 12:26:57,881 | INFO     | event service: False
[2025-12-16 07:27:35] 2025-12-16 12:26:57,881 | INFO     | sizes: {0: 2283725, 1: 2283980, 2: 2284008, 13: 2284008, 24: 2284064, 31: 2284354, 34: 2284510, 18098: 2316742, 18104: 2325740, 18107: 2325796, 18136: 2325990}
[2025-12-16 07:27:35] 2025-12-16 12:26:57,881 | INFO     | --------------------------------------------------
[2025-12-16 07:27:35] 2025-12-16 12:26:57,881 | INFO     | 
[2025-12-16 07:27:35] 2025-12-16 12:26:57,882 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-16 07:27:35] 2025-12-16 12:26:57,996 | INFO     | time since job start (18196s) is within the limit (174528.0s)
[2025-12-16 07:27:35] 2025-12-16 12:26:57,999 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 07:27:35] 2025-12-16 12:26:57,999 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 07:27:35] 2025-12-16 12:26:57,999 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 07:27:35] 2025-12-16 12:26:57,999 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 07:27:35] 2025-12-16 12:26:57,999 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 07:27:35] 2025-12-16 12:26:57,999 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 07:27:35] 2025-12-16 12:26:57,999 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 07:27:35] 2025-12-16 12:26:57,999 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 07:27:35] 2025-12-16 12:26:57,999 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 07:27:35] 2025-12-16 12:26:58,000 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 07:27:35] 2025-12-16 12:26:58,000 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 07:27:35] 2025-12-16 12:26:58,000 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 07:27:35] 2025-12-16 12:26:58,000 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 07:27:35] 2025-12-16 12:26:58,000 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 07:27:35] 2025-12-16 12:26:58,000 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 07:27:35] 2025-12-16 12:26:58,000 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 07:27:35] 2025-12-16 12:26:58,000 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 07:27:35] 2025-12-16 12:26:58,000 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 07:27:35] 2025-12-16 12:26:58,000 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 07:27:35] 2025-12-16 12:26:58,000 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 07:27:35] 2025-12-16 12:26:58,000 | INFO     | job 6929435572 has completed (purged errors)
[2025-12-16 07:27:35] 2025-12-16 12:26:58,001 | INFO     | overall cleanup function is called
[2025-12-16 07:27:35] 2025-12-16 12:26:59,013 | INFO     | --- collectZombieJob: --- 10, [552263]
[2025-12-16 07:27:35] 2025-12-16 12:26:59,014 | INFO     | zombie collector waiting for pid 552263
[2025-12-16 07:27:35] 2025-12-16 12:26:59,014 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 07:27:35] 2025-12-16 12:26:59,014 | INFO     | collected zombie processes
[2025-12-16 07:27:35] 2025-12-16 12:26:59,014 | INFO     | will attempt to kill all subprocesses of pid=552263
[2025-12-16 07:27:35] 2025-12-16 12:27:00,026 | INFO     | process IDs to be killed: [552263] (in reverse order)
[2025-12-16 07:27:35] 2025-12-16 12:27:00,382 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 07:27:35] 2025-12-16 12:27:00,382 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 07:27:35] 2025-12-16 12:27:00,420 | INFO     | did not find any defunct processes belonging to 552263
[2025-12-16 07:27:35] 2025-12-16 12:27:00,487 | INFO     | did not find any defunct processes belonging to 552263
[2025-12-16 07:27:35] 2025-12-16 12:27:00,487 | INFO     | ready for new job
[2025-12-16 07:27:35] 2025-12-16 12:27:00,488 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 07:27:35] 2025-12-16 12:27:00,490 | INFO     | ***************************************
[2025-12-16 07:27:35] 2025-12-16 12:27:00,490 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 07:27:35] 2025-12-16 12:27:00,490 | INFO     | ***************************************
[2025-12-16 07:27:35] 2025-12-16 12:27:00,490 | INFO     | 
[2025-12-16 07:27:35] 2025-12-16 12:27:00,496 | INFO     | architecture information:
[2025-12-16 07:27:35] 2025-12-16 12:27:00,504 | INFO     | executing command: cat /etc/os-release
[2025-12-16 07:27:35] 2025-12-16 12:27:00,640 | INFO     | cat /etc/os-release:
[2025-12-16 07:27:35] NAME="CentOS Linux"
[2025-12-16 07:27:35] VERSION="7 (Core)"
[2025-12-16 07:27:35] ID="centos"
[2025-12-16 07:27:35] ID_LIKE="rhel fedora"
[2025-12-16 07:27:35] VERSION_ID="7"
[2025-12-16 07:27:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 07:27:35] ANSI_COLOR="0;31"
[2025-12-16 07:27:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 07:27:35] HOME_URL="https://www.centos.org/"
[2025-12-16 07:27:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 07:27:35] 
[2025-12-16 07:27:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 07:27:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 07:27:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 07:27:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 07:27:35] 
[2025-12-16 07:27:35] 2025-12-16 12:27:00,640 | INFO     | ***************************************
[2025-12-16 07:27:35] 2025-12-16 12:27:01,144 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-16 07:27:35] 2025-12-16 12:27:01,274 | INFO     | sufficient remaining disk space (93703897088 B)
[2025-12-16 07:27:35] 2025-12-16 12:27:01,274 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 07:27:35] 2025-12-16 12:27:01,274 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 07:27:35] 2025-12-16 12:27:01,275 | INFO     | update_server=False
[2025-12-16 07:27:35] 2025-12-16 12:27:01,275 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 07:27:35] 2025-12-16 12:27:01,275 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 07:27:35] 2025-12-16 12:27:01,423 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-16 07:27:35] 2025-12-16 12:27:01,424 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-16 07:27:35] 2025-12-16 12:27:01,424 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 07:27:35] 2025-12-16 12:27:01,424 | INFO     | will abort loop
[2025-12-16 07:27:35] 2025-12-16 12:27:01,630 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 07:27:35] 2025-12-16 12:27:01,691 | INFO     | all payload control threads have been joined
[2025-12-16 07:27:35] 2025-12-16 12:27:01,848 | INFO     | all data control threads have been joined
[2025-12-16 07:27:35] 2025-12-16 12:27:02,252 | INFO     | all job control threads have been joined
[2025-12-16 07:27:35] 2025-12-16 12:27:02,281 | INFO     | [job] retrieve thread has finished
[2025-12-16 07:27:35] 2025-12-16 12:27:02,341 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 07:27:35] 2025-12-16 12:27:02,341 | INFO     | [job] validate thread has finished
[2025-12-16 07:27:35] 2025-12-16 12:27:02,430 | INFO     | [job] job monitor thread has finished
[2025-12-16 07:27:35] 2025-12-16 12:27:02,436 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 07:27:35] 2025-12-16 12:27:02,603 | INFO     | [payload] validate_post thread has finished
[2025-12-16 07:27:35] 2025-12-16 12:27:02,698 | INFO     | [payload] control thread has finished
[2025-12-16 07:27:35] 2025-12-16 12:27:02,865 | INFO     | [data] control thread has finished
[2025-12-16 07:27:35] 2025-12-16 12:27:02,941 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 07:27:35] 2025-12-16 12:27:02,993 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 07:27:35] 2025-12-16 12:27:03,267 | INFO     | [job] control thread has finished
[2025-12-16 07:27:35] 2025-12-16 12:27:03,282 | INFO     | [data] copytool_out thread has finished
[2025-12-16 07:27:35] 2025-12-16 12:27:03,443 | INFO     | [job] queue monitor thread has finished
[2025-12-16 07:27:35] 2025-12-16 12:27:03,660 | INFO     | [payload] failed_post thread has finished
[2025-12-16 07:27:35] 2025-12-16 12:27:03,770 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 07:27:35] 2025-12-16 12:27:03,781 | INFO     | [data] copytool_in thread has finished
[2025-12-16 07:27:35] 2025-12-16 12:27:05,639 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 07:27:35] 2025-12-16 12:27:13,186 | INFO     | [monitor] cgroup control has ended
[2025-12-16 07:27:35] 2025-12-16 12:27:14,193 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139868411160384)>', '<ExcThread(monitor, started 139867916838656)>']
[2025-12-16 07:27:35] 2025-12-16 12:27:19,218 | INFO     | all workflow threads have been joined
[2025-12-16 07:27:35] 2025-12-16 12:27:19,219 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 07:27:35] 2025-12-16 12:27:19,219 | INFO     | traces error code: 0
[2025-12-16 07:27:35] 2025-12-16 12:27:19,219 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 07:27:35] 2025-12-16 12:27:33,885 | INFO     | PID=541817 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 07:27:35] 2025-12-16 12:27:33,885 | INFO     | .. there are 28 such processes running
[2025-12-16 07:27:35] 2025-12-16 12:27:33,902 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 07:27:35] 2025-12-16 12:27:33,903 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 07:27:35] 2025-12-16 12:27:33,903 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 07:27:35] 2025-12-16 12:27:33,903 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 07:27:35] 2025-12-16 12:27:33,903 | INFO     | [monitor] control thread has ended
[2025-12-16 07:27:35] 2025-12-16 12:27:34,918 [wrapper] ==== pilot stdout END ====
[2025-12-16 07:27:35] 2025-12-16 12:27:34,943 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 07:27:35] 2025-12-16 12:27:34,957 [wrapper] pilotpid: 541817
[2025-12-16 07:27:35] 2025-12-16 12:27:34,970 [wrapper] Pilot exit status: 0
[2025-12-16 07:27:35] 2025-12-16 12:27:35,112 [wrapper] pandaids: 6929435572
[2025-12-16 07:27:35] 2025-12-16 12:27:35,444 [wrapper] cleanup supervisor_pilot 1787415 541818
[2025-12-16 07:27:35] 2025-12-16 12:27:35,459 [wrapper] Test setup, not cleaning
[2025-12-16 07:27:35] 2025-12-16 12:27:35,480 [wrapper] apfmon messages muted
[2025-12-16 07:27:35] 2025-12-16 12:27:35,499 [wrapper] ==== wrapper stdout END ====
[2025-12-16 07:27:35] 2025-12-16 12:27:35,506 [wrapper] ==== wrapper stderr END ====
[2025-12-16 07:27:35]  *** Error codes and diagnostics ***
[2025-12-16 07:27:35]     "exeErrorCode": 0,
[2025-12-16 07:27:35]     "exeErrorDiag": "",
[2025-12-16 07:27:35]     "pilotErrorCode": 0,
[2025-12-16 07:27:35]     "pilotErrorDiag": "",
[2025-12-16 07:27:35]  *** Listing of results directory ***
[2025-12-16 07:27:35] total 445116
[2025-12-16 07:27:35] -rw-r--r--. 1 boincer umatlas    579449 Dec 13 23:46 pilot3.tar.gz
[2025-12-16 07:27:35] -rwx------. 1 boincer umatlas     36322 Dec 13 23:50 runpilot2-wrapper.sh
[2025-12-16 07:27:35] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 23:51 queuedata.json
[2025-12-16 07:27:35] -rw-r--r--. 1 boincer umatlas       100 Dec 16 02:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 07:27:35] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 16 02:22 run_atlas
[2025-12-16 07:27:35] -rw-r--r--. 1 boincer umatlas       105 Dec 16 02:22 job.xml
[2025-12-16 07:27:35] -rw-r--r--. 2 boincer umatlas 227089796 Dec 16 02:22 EVNT.47898761._000320.pool.root.1
[2025-12-16 07:27:35] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 02:22 start_atlas.sh
[2025-12-16 07:27:35] drwxrwx--x. 2 boincer umatlas      4096 Dec 16 02:22 shared
[2025-12-16 07:27:35] -rw-r--r--. 2 boincer umatlas    592403 Dec 16 02:22 input.tar.gz
[2025-12-16 07:27:35] -rw-r--r--. 1 boincer umatlas         0 Dec 16 02:22 boinc_lockfile
[2025-12-16 07:27:35] -rw-r--r--. 1 boincer umatlas      2504 Dec 16 02:22 pandaJob.out
[2025-12-16 07:27:35] -rw-------. 1 boincer umatlas        57 Dec 16 02:22 setup.sh.local
[2025-12-16 07:27:35] -rw-------. 1 boincer umatlas    994531 Dec 16 02:23 agis_schedconf.cvmfs.json
[2025-12-16 07:27:35] drwx------. 5 boincer umatlas      4096 Dec 16 02:23 pilot3
[2025-12-16 07:27:35] -rw-r--r--. 1 boincer umatlas      6878 Dec 16 07:21 init_data.xml
[2025-12-16 07:27:35] -rw-------. 1 boincer umatlas 219220433 Dec 16 07:24 HITS.47898763._007988.pool.root.1
[2025-12-16 07:27:35] -rw-r--r--. 1 boincer umatlas       530 Dec 16 07:24 boinc_task_state.xml
[2025-12-16 07:27:35] -rw-------. 1 boincer umatlas      1045 Dec 16 07:26 memory_monitor_summary.json
[2025-12-16 07:27:35] -rw-------. 1 boincer umatlas   1516240 Dec 16 07:26 agis_ddmendpoints.agis.ALL.json
[2025-12-16 07:27:35] -rw-------. 1 boincer umatlas    503543 Dec 16 07:26 log.47898763._007988.job.log.tgz.1
[2025-12-16 07:27:35] -rw-------. 1 boincer umatlas      7826 Dec 16 07:26 heartbeat.json
[2025-12-16 07:27:35] -rw-r--r--. 1 boincer umatlas      8192 Dec 16 07:27 boinc_mmap_file
[2025-12-16 07:27:35] -rw-r--r--. 1 boincer umatlas        28 Dec 16 07:27 wrapper_checkpoint.txt
[2025-12-16 07:27:35] -rw-------. 1 boincer umatlas        95 Dec 16 07:27 pilot_heartbeat.json
[2025-12-16 07:27:35] -rw-------. 1 boincer umatlas       822 Dec 16 07:27 pilotlog.txt
[2025-12-16 07:27:35] -rw-------. 1 boincer umatlas   2285108 Dec 16 07:27 log.47898763._007988.job.log.1
[2025-12-16 07:27:35] -rw-------. 1 boincer umatlas       357 Dec 16 07:27 output.list
[2025-12-16 07:27:35] -rw-r--r--. 1 boincer umatlas       620 Dec 16 07:27 runtime_log
[2025-12-16 07:27:35] -rw-------. 1 boincer umatlas   2805760 Dec 16 07:27 result.tar.gz
[2025-12-16 07:27:35] -rw-r--r--. 1 boincer umatlas      9348 Dec 16 07:27 runtime_log.err
[2025-12-16 07:27:35] -rw-------. 1 boincer umatlas       656 Dec 16 07:27 kzSNDmxEto8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmG0UKDmXxO44m.diag
[2025-12-16 07:27:35] -rw-r--r--. 1 boincer umatlas     21414 Dec 16 07:27 stderr.txt
[2025-12-16 07:27:36] HITS file was successfully produced:
[2025-12-16 07:27:36] -rw-------. 1 boincer umatlas 219220433 Dec 16 07:24 shared/HITS.pool.root.1
[2025-12-16 07:27:36]  *** Contents of shared directory: ***
[2025-12-16 07:27:36] total 439196
[2025-12-16 07:27:36] -rw-r--r--. 2 boincer umatlas 227089796 Dec 16 02:22 ATLAS.root_0
[2025-12-16 07:27:36] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 02:22 start_atlas.sh
[2025-12-16 07:27:36] -rw-r--r--. 2 boincer umatlas    592403 Dec 16 02:22 input.tar.gz
[2025-12-16 07:27:36] -rw-------. 1 boincer umatlas 219220433 Dec 16 07:24 HITS.pool.root.1
[2025-12-16 07:27:36] -rw-------. 1 boincer umatlas   2805760 Dec 16 07:27 result.tar.gz
07:27:37 (537185): run_atlas exited; CPU time 62133.026101
07:27:37 (537185): called boinc_finish(0)

</stderr_txt>
]]>

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