Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:37:22 (2115039): wrapper (7.7.26015): starting
18:37:22 (2115039): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 18:37:22] Arguments: --nthreads 4
[2025-12-16 18:37:22] Threads: 4
[2025-12-16 18:37:22] Checking for CVMFS
[2025-12-16 18:37:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 18:37:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 18:37:22] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 18:37:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 18:37:23] 2.9.2.0 382260 4732 95180 154081 1 56 25281732 36864001 0 130560 0 3723272 99.991 174316 18211 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-16 18:37:23] CVMFS is ok
[2025-12-16 18:37:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 18:37:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 18:37:23] Further information can be found at the LHC@home message board.
[2025-12-16 18:37:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 18:37:23] Checking for apptainer binary...
[2025-12-16 18:37:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 18:37:23] Running /usr/bin/apptainer --version
[2025-12-16 18:37:23] apptainer version 1.4.1-1.1
[2025-12-16 18:37:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 18:37:23] atlasA237
[2025-12-16 18:37:23] apptainer works
[2025-12-16 18:37:23] Set ATHENA_PROC_NUMBER=4
[2025-12-16 18:37:23] Set ATHENA_CORE_NUMBER=4
[2025-12-16 18:37:23] Starting ATLAS job with PandaID=6929808776
[2025-12-16 18:37:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 20:16:52]  *** The last 200 lines of the pilot log: ***
[2025-12-16 20:16:52] 2025-12-16 19:16:20,272 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 20:16:52] 2025-12-16 19:16:20,272 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 20:16:52] 2025-12-16 19:16:20,272 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 20:16:52] 2025-12-16 19:16:20,272 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 20:16:52] 2025-12-16 19:16:20,272 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 20:16:52] 2025-12-16 19:16:20,272 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 20:16:52] 2025-12-16 19:16:20,272 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 20:16:52] 2025-12-16 19:16:20,272 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 20:16:52] 2025-12-16 19:16:20,273 | INFO     | job 6929808776 has completed (purged errors)
[2025-12-16 20:16:52] 2025-12-16 19:16:20,273 | INFO     | overall cleanup function is called
[2025-12-16 20:16:52] 2025-12-16 19:16:21,279 | INFO     | --- collectZombieJob: --- 10, [2125437]
[2025-12-16 20:16:52] 2025-12-16 19:16:21,279 | INFO     | zombie collector waiting for pid 2125437
[2025-12-16 20:16:52] 2025-12-16 19:16:21,279 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 20:16:52] 2025-12-16 19:16:21,279 | INFO     | collected zombie processes
[2025-12-16 20:16:52] 2025-12-16 19:16:21,279 | INFO     | will attempt to kill all subprocesses of pid=2125437
[2025-12-16 20:16:52] 2025-12-16 19:16:21,342 | INFO     | process IDs to be killed: [2125437] (in reverse order)
[2025-12-16 20:16:52] 2025-12-16 19:16:21,379 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 20:16:52] 2025-12-16 19:16:21,379 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 20:16:52] 2025-12-16 19:16:21,382 | INFO     | did not find any defunct processes belonging to 2125437
[2025-12-16 20:16:52] 2025-12-16 19:16:21,384 | INFO     | did not find any defunct processes belonging to 2125437
[2025-12-16 20:16:52] 2025-12-16 19:16:21,384 | INFO     | ready for new job
[2025-12-16 20:16:52] 2025-12-16 19:16:21,384 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 20:16:52] 2025-12-16 19:16:21,385 | INFO     | ***************************************
[2025-12-16 20:16:52] 2025-12-16 19:16:21,385 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 20:16:52] 2025-12-16 19:16:21,385 | INFO     | ***************************************
[2025-12-16 20:16:52] 2025-12-16 19:16:21,385 | INFO     | 
[2025-12-16 20:16:52] 2025-12-16 19:16:21,385 | INFO     | architecture information:
[2025-12-16 20:16:52] 2025-12-16 19:16:21,385 | INFO     | executing command: cat /etc/os-release
[2025-12-16 20:16:52] 2025-12-16 19:16:21,398 | INFO     | cat /etc/os-release:
[2025-12-16 20:16:52] NAME="CentOS Linux"
[2025-12-16 20:16:52] VERSION="7 (Core)"
[2025-12-16 20:16:52] ID="centos"
[2025-12-16 20:16:52] ID_LIKE="rhel fedora"
[2025-12-16 20:16:52] VERSION_ID="7"
[2025-12-16 20:16:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 20:16:52] ANSI_COLOR="0;31"
[2025-12-16 20:16:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 20:16:52] HOME_URL="https://www.centos.org/"
[2025-12-16 20:16:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 20:16:52] 
[2025-12-16 20:16:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 20:16:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 20:16:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 20:16:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 20:16:52] 
[2025-12-16 20:16:52] 2025-12-16 19:16:21,398 | INFO     | ***************************************
[2025-12-16 20:16:52] 2025-12-16 19:16:21,902 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-16 20:16:52] 2025-12-16 19:16:21,918 | INFO     | sufficient remaining disk space (334209482752 B)
[2025-12-16 20:16:52] 2025-12-16 19:16:21,918 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 20:16:52] 2025-12-16 19:16:21,918 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 20:16:52] 2025-12-16 19:16:21,918 | INFO     | update_server=False
[2025-12-16 20:16:52] 2025-12-16 19:16:21,918 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 20:16:52] 2025-12-16 19:16:21,919 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 20:16:52] 2025-12-16 19:16:21,919 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 20:16:52] 2025-12-16 19:16:22,410 | INFO     | all payload control threads have been joined
[2025-12-16 20:16:52] 2025-12-16 19:16:22,566 | INFO     | all job control threads have been joined
[2025-12-16 20:16:52] 2025-12-16 19:16:22,873 | INFO     | all data control threads have been joined
[2025-12-16 20:16:52] 2025-12-16 19:16:22,877 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 20:16:52] 2025-12-16 19:16:22,878 | INFO     | aborting loop
[2025-12-16 20:16:52] 2025-12-16 19:16:22,924 | INFO     | [job] retrieve thread has finished
[2025-12-16 20:16:52] 2025-12-16 19:16:22,924 | INFO     | [job] queue monitor thread has finished
[2025-12-16 20:16:52] 2025-12-16 19:16:22,931 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 20:16:52] 2025-12-16 19:16:23,362 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 20:16:52] 2025-12-16 19:16:23,373 | INFO     | [data] copytool_in thread has finished
[2025-12-16 20:16:52] 2025-12-16 19:16:23,415 | INFO     | [payload] control thread has finished
[2025-12-16 20:16:52] 2025-12-16 19:16:23,572 | INFO     | [job] control thread has finished
[2025-12-16 20:16:52] 2025-12-16 19:16:23,879 | INFO     | [data] control thread has finished
[2025-12-16 20:16:52] 2025-12-16 19:16:23,883 | INFO     | [job] job monitor thread has finished
[2025-12-16 20:16:52] 2025-12-16 19:16:23,925 | INFO     | [data] copytool_out thread has finished
[2025-12-16 20:16:52] 2025-12-16 19:16:24,204 | INFO     | [payload] validate_post thread has finished
[2025-12-16 20:16:52] 2025-12-16 19:16:24,292 | INFO     | [job] validate thread has finished
[2025-12-16 20:16:52] 2025-12-16 19:16:24,310 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 20:16:52] 2025-12-16 19:16:24,526 | INFO     | [payload] failed_post thread has finished
[2025-12-16 20:16:52] 2025-12-16 19:16:24,755 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 20:16:52] 2025-12-16 19:16:28,763 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 20:16:52] 2025-12-16 19:16:32,232 | INFO     | job.realtimelogging is not enabled
[2025-12-16 20:16:52] 2025-12-16 19:16:33,238 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 20:16:52] 2025-12-16 19:16:37,085 | INFO     | [monitor] cgroup control has ended
[2025-12-16 20:16:52] 2025-12-16 19:16:37,626 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140693015504704)>', '<ExcThread(monitor, started 140691711715072)>']
[2025-12-16 20:16:52] 2025-12-16 19:16:42,652 | INFO     | all workflow threads have been joined
[2025-12-16 20:16:52] 2025-12-16 19:16:42,652 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 20:16:52] 2025-12-16 19:16:42,652 | INFO     | traces error code: 0
[2025-12-16 20:16:52] 2025-12-16 19:16:42,653 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 20:16:52] 2025-12-16 19:16:52,493 | INFO     | PID=2118843 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 20:16:52] 2025-12-16 19:16:52,493 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 20:16:52] 2025-12-16 19:16:52,493 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 20:16:52] 2025-12-16 19:16:52,493 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 20:16:52] 2025-12-16 19:16:52,493 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 20:16:52] 2025-12-16 19:16:52,493 | INFO     | [monitor] control thread has ended
[2025-12-16 20:16:52] 2025-12-16 19:16:52,559 [wrapper] ==== pilot stdout END ====
[2025-12-16 20:16:52] 2025-12-16 19:16:52,562 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 20:16:52] 2025-12-16 19:16:52,566 [wrapper] pilotpid: 2118843
[2025-12-16 20:16:52] 2025-12-16 19:16:52,570 [wrapper] Pilot exit status: 0
[2025-12-16 20:16:52] 2025-12-16 19:16:52,580 [wrapper] pandaids: 6929808776
[2025-12-16 20:16:52] 2025-12-16 19:16:52,606 [wrapper] cleanup supervisor_pilot 2143283 2118844
[2025-12-16 20:16:52] 2025-12-16 19:16:52,609 [wrapper] Test setup, not cleaning
[2025-12-16 20:16:52] 2025-12-16 19:16:52,613 [wrapper] apfmon messages muted
[2025-12-16 20:16:52] 2025-12-16 19:16:52,617 [wrapper] ==== wrapper stdout END ====
[2025-12-16 20:16:52] 2025-12-16 19:16:52,621 [wrapper] ==== wrapper stderr END ====
[2025-12-16 20:16:52]  *** Error codes and diagnostics ***
[2025-12-16 20:16:52]     "exeErrorCode": 0,
[2025-12-16 20:16:52]     "exeErrorDiag": "",
[2025-12-16 20:16:52]     "pilotErrorCode": 0,
[2025-12-16 20:16:52]     "pilotErrorDiag": "",
[2025-12-16 20:16:52]  *** Listing of results directory ***
[2025-12-16 20:16:52] total 439820
[2025-12-16 20:16:52] -rw-r--r-- 1 boinc boinc    579449 Dec 15 19:24 pilot3.tar.gz
[2025-12-16 20:16:52] -rwx------ 1 boinc boinc     36322 Dec 15 19:28 runpilot2-wrapper.sh
[2025-12-16 20:16:52] -rw-r--r-- 1 boinc boinc      5112 Dec 15 19:31 queuedata.json
[2025-12-16 20:16:52] -rw-r--r-- 1 boinc boinc       100 Dec 16 18:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 20:16:52] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 18:37 run_atlas
[2025-12-16 20:16:52] -rw-r--r-- 1 boinc boinc       105 Dec 16 18:37 job.xml
[2025-12-16 20:16:52] -rw-r--r-- 2 boinc boinc 224538426 Dec 16 18:37 EVNT.47898824._000101.pool.root.1
[2025-12-16 20:16:52] drwxrwx--x 2 boinc boinc      4096 Dec 16 18:37 shared
[2025-12-16 20:16:52] -rw-r--r-- 2 boinc boinc    592389 Dec 16 18:37 input.tar.gz
[2025-12-16 20:16:52] -rw-r--r-- 2 boinc boinc     15847 Dec 16 18:37 start_atlas.sh
[2025-12-16 20:16:52] -rw-r--r-- 1 boinc boinc         0 Dec 16 18:37 boinc_setup_complete
[2025-12-16 20:16:52] -rw-r--r-- 1 boinc boinc      6372 Dec 16 18:37 init_data.xml
[2025-12-16 20:16:52] -rw-r--r-- 1 boinc boinc         0 Dec 16 18:37 boinc_lockfile
[2025-12-16 20:16:52] -rw-r--r-- 1 boinc boinc      2514 Dec 16 18:37 pandaJob.out
[2025-12-16 20:16:52] -rw------- 1 boinc boinc    987401 Dec 16 18:37 agis_schedconf.cvmfs.json
[2025-12-16 20:16:52] -rw------- 1 boinc boinc   1516240 Dec 16 18:37 agis_ddmendpoints.agis.ALL.json
[2025-12-16 20:16:52] drwx------ 5 boinc boinc      4096 Dec 16 18:37 pilot3
[2025-12-16 20:16:52] -rw------- 1 boinc boinc 219661536 Dec 16 20:15 HITS.47898826._002560.pool.root.1
[2025-12-16 20:16:52] -rw-r--r-- 1 boinc boinc       529 Dec 16 20:15 boinc_task_state.xml
[2025-12-16 20:16:52] -rw------- 1 boinc boinc      1023 Dec 16 20:16 memory_monitor_summary.json
[2025-12-16 20:16:52] -rw------- 1 boinc boinc        95 Dec 16 20:16 pilot_heartbeat.json
[2025-12-16 20:16:52] -rw------- 1 boinc boinc    280825 Dec 16 20:16 log.47898826._002560.job.log.tgz.1
[2025-12-16 20:16:52] -rw------- 1 boinc boinc      7778 Dec 16 20:16 heartbeat.json
[2025-12-16 20:16:52] -rw-r--r-- 1 boinc boinc      8192 Dec 16 20:16 boinc_mmap_file
[2025-12-16 20:16:52] -rw-r--r-- 1 boinc boinc        27 Dec 16 20:16 wrapper_checkpoint.txt
[2025-12-16 20:16:52] -rw------- 1 boinc boinc       747 Dec 16 20:16 pilotlog.txt
[2025-12-16 20:16:52] -rw------- 1 boinc boinc    859328 Dec 16 20:16 log.47898826._002560.job.log.1
[2025-12-16 20:16:52] -rw------- 1 boinc boinc       357 Dec 16 20:16 output.list
[2025-12-16 20:16:52] -rw-r--r-- 1 boinc boinc       620 Dec 16 20:16 runtime_log
[2025-12-16 20:16:52] -rw------- 1 boinc boinc   1157120 Dec 16 20:16 result.tar.gz
[2025-12-16 20:16:52] -rw------- 1 boinc boinc       662 Dec 16 20:16 sOOMDmFUSp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5bYKDm1wimWo.diag
[2025-12-16 20:16:52] -rw-r--r-- 1 boinc boinc      8912 Dec 16 20:16 runtime_log.err
[2025-12-16 20:16:52] -rw-r--r-- 1 boinc boinc     11717 Dec 16 20:16 stderr.txt
[2025-12-16 20:16:52] HITS file was successfully produced:
[2025-12-16 20:16:52] -rw------- 1 boinc boinc 219661536 Dec 16 20:15 shared/HITS.pool.root.1
[2025-12-16 20:16:52]  *** Contents of shared directory: ***
[2025-12-16 20:16:52] total 435528
[2025-12-16 20:16:52] -rw-r--r-- 2 boinc boinc 224538426 Dec 16 18:37 ATLAS.root_0
[2025-12-16 20:16:52] -rw-r--r-- 2 boinc boinc    592389 Dec 16 18:37 input.tar.gz
[2025-12-16 20:16:52] -rw-r--r-- 2 boinc boinc     15847 Dec 16 18:37 start_atlas.sh
[2025-12-16 20:16:52] -rw------- 1 boinc boinc 219661536 Dec 16 20:15 HITS.pool.root.1
[2025-12-16 20:16:52] -rw------- 1 boinc boinc   1157120 Dec 16 20:16 result.tar.gz
20:16:54 (2115039): run_atlas exited; CPU time 22569.554547
20:16:54 (2115039): called boinc_finish(0)

</stderr_txt>
]]>

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