Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:42:26 (1448498): wrapper (7.7.26015): starting
14:42:26 (1448498): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 14:42:26] Arguments: --nthreads 4
[2025-12-16 14:42:26] Threads: 4
[2025-12-16 14:42:26] Checking for CVMFS
[2025-12-16 14:42:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 14:42:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 14:42:26] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 14:42:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 14:42:26] 2.9.2.0 31218 5021 100724 154072 2 57 19127104 36864001 0 130560 0 3724548 99.990 183101 9868 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-16 14:42:26] CVMFS is ok
[2025-12-16 14:42:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 14:42:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 14:42:26] Further information can be found at the LHC@home message board.
[2025-12-16 14:42:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 14:42:26] Checking for apptainer binary...
[2025-12-16 14:42:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 14:42:26] Running /usr/bin/apptainer --version
[2025-12-16 14:42:26] apptainer version 1.4.1-1.1
[2025-12-16 14:42:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 14:42:26] thA332a
[2025-12-16 14:42:26] apptainer works
[2025-12-16 14:42:26] Set ATHENA_PROC_NUMBER=4
[2025-12-16 14:42:26] Set ATHENA_CORE_NUMBER=4
[2025-12-16 14:42:26] Starting ATLAS job with PandaID=6929784013
[2025-12-16 14:42:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 16:23:49]  *** The last 200 lines of the pilot log: ***
[2025-12-16 16:23:49] 2025-12-16 15:23:16,921 | INFO     | job 6929784013 has completed (purged errors)
[2025-12-16 16:23:49] 2025-12-16 15:23:16,921 | INFO     | overall cleanup function is called
[2025-12-16 16:23:49] 2025-12-16 15:23:17,928 | INFO     | --- collectZombieJob: --- 10, [1458874]
[2025-12-16 16:23:49] 2025-12-16 15:23:17,928 | INFO     | zombie collector waiting for pid 1458874
[2025-12-16 16:23:49] 2025-12-16 15:23:17,928 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 16:23:49] 2025-12-16 15:23:17,928 | INFO     | collected zombie processes
[2025-12-16 16:23:49] 2025-12-16 15:23:17,928 | INFO     | will attempt to kill all subprocesses of pid=1458874
[2025-12-16 16:23:49] 2025-12-16 15:23:17,973 | INFO     | process IDs to be killed: [1458874] (in reverse order)
[2025-12-16 16:23:49] 2025-12-16 15:23:18,004 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 16:23:49] 2025-12-16 15:23:18,004 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 16:23:49] 2025-12-16 15:23:18,006 | INFO     | did not find any defunct processes belonging to 1458874
[2025-12-16 16:23:49] 2025-12-16 15:23:18,007 | INFO     | did not find any defunct processes belonging to 1458874
[2025-12-16 16:23:49] 2025-12-16 15:23:18,007 | INFO     | ready for new job
[2025-12-16 16:23:49] 2025-12-16 15:23:18,007 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 16:23:49] 2025-12-16 15:23:18,008 | INFO     | ***************************************
[2025-12-16 16:23:49] 2025-12-16 15:23:18,008 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 16:23:49] 2025-12-16 15:23:18,008 | INFO     | ***************************************
[2025-12-16 16:23:49] 2025-12-16 15:23:18,008 | INFO     | 
[2025-12-16 16:23:49] 2025-12-16 15:23:18,008 | INFO     | architecture information:
[2025-12-16 16:23:49] 2025-12-16 15:23:18,009 | INFO     | executing command: cat /etc/os-release
[2025-12-16 16:23:49] 2025-12-16 15:23:18,022 | INFO     | cat /etc/os-release:
[2025-12-16 16:23:49] NAME="CentOS Linux"
[2025-12-16 16:23:49] VERSION="7 (Core)"
[2025-12-16 16:23:49] ID="centos"
[2025-12-16 16:23:49] ID_LIKE="rhel fedora"
[2025-12-16 16:23:49] VERSION_ID="7"
[2025-12-16 16:23:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 16:23:49] ANSI_COLOR="0;31"
[2025-12-16 16:23:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 16:23:49] HOME_URL="https://www.centos.org/"
[2025-12-16 16:23:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 16:23:49] 
[2025-12-16 16:23:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 16:23:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 16:23:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 16:23:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 16:23:49] 
[2025-12-16 16:23:49] 2025-12-16 15:23:18,022 | INFO     | ***************************************
[2025-12-16 16:23:49] 2025-12-16 15:23:18,525 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-16 16:23:49] 2025-12-16 15:23:18,542 | INFO     | sufficient remaining disk space (341190901760 B)
[2025-12-16 16:23:49] 2025-12-16 15:23:18,542 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 16:23:49] 2025-12-16 15:23:18,542 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 16:23:49] 2025-12-16 15:23:18,542 | INFO     | update_server=False
[2025-12-16 16:23:49] 2025-12-16 15:23:18,542 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 16:23:49] 2025-12-16 15:23:18,543 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 16:23:49] 2025-12-16 15:23:18,543 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 16:23:49] 2025-12-16 15:23:18,731 | INFO     | all payload control threads have been joined
[2025-12-16 16:23:49] 2025-12-16 15:23:18,894 | INFO     | all job control threads have been joined
[2025-12-16 16:23:49] 2025-12-16 15:23:19,234 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 16:23:49] 2025-12-16 15:23:19,234 | INFO     | aborting loop
[2025-12-16 16:23:49] 2025-12-16 15:23:19,312 | INFO     | all data control threads have been joined
[2025-12-16 16:23:49] 2025-12-16 15:23:19,548 | INFO     | [job] retrieve thread has finished
[2025-12-16 16:23:49] 2025-12-16 15:23:19,549 | INFO     | [job] queue monitor thread has finished
[2025-12-16 16:23:49] 2025-12-16 15:23:19,684 | INFO     | [payload] validate_post thread has finished
[2025-12-16 16:23:49] 2025-12-16 15:23:19,737 | INFO     | [payload] control thread has finished
[2025-12-16 16:23:49] 2025-12-16 15:23:19,899 | INFO     | [job] control thread has finished
[2025-12-16 16:23:49] 2025-12-16 15:23:20,236 | INFO     | [job] job monitor thread has finished
[2025-12-16 16:23:49] 2025-12-16 15:23:20,318 | INFO     | [data] control thread has finished
[2025-12-16 16:23:49] 2025-12-16 15:23:20,423 | INFO     | [job] validate thread has finished
[2025-12-16 16:23:49] 2025-12-16 15:23:20,451 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 16:23:49] 2025-12-16 15:23:20,462 | INFO     | [payload] failed_post thread has finished
[2025-12-16 16:23:49] 2025-12-16 15:23:20,549 | INFO     | [data] copytool_out thread has finished
[2025-12-16 16:23:49] 2025-12-16 15:23:20,662 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 16:23:49] 2025-12-16 15:23:20,740 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 16:23:49] 2025-12-16 15:23:20,826 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 16:23:49] 2025-12-16 15:23:20,899 | INFO     | [data] copytool_in thread has finished
[2025-12-16 16:23:49] 2025-12-16 15:23:24,833 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 16:23:49] 2025-12-16 15:23:28,764 | INFO     | job.realtimelogging is not enabled
[2025-12-16 16:23:49] 2025-12-16 15:23:29,770 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 16:23:49] 2025-12-16 15:23:40,680 | INFO     | [monitor] cgroup control has ended
[2025-12-16 16:23:49] 2025-12-16 15:23:41,110 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140629540804416)>', '<ExcThread(monitor, started 140628805531392)>']
[2025-12-16 16:23:49] 2025-12-16 15:23:46,136 | INFO     | all workflow threads have been joined
[2025-12-16 16:23:49] 2025-12-16 15:23:46,136 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 16:23:49] 2025-12-16 15:23:46,136 | INFO     | traces error code: 0
[2025-12-16 16:23:49] 2025-12-16 15:23:46,137 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 16:23:49] 2025-12-16 15:23:49,520 | INFO     | PID=1452288 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 16:23:49] 2025-12-16 15:23:49,520 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 16:23:49] 2025-12-16 15:23:49,520 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 16:23:49] 2025-12-16 15:23:49,520 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 16:23:49] 2025-12-16 15:23:49,520 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 16:23:49] 2025-12-16 15:23:49,520 | INFO     | [monitor] control thread has ended
[2025-12-16 16:23:49] 2025-12-16 15:23:49,593 [wrapper] ==== pilot stdout END ====
[2025-12-16 16:23:49] 2025-12-16 15:23:49,597 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 16:23:49] 2025-12-16 15:23:49,601 [wrapper] pilotpid: 1452288
[2025-12-16 16:23:49] 2025-12-16 15:23:49,605 [wrapper] Pilot exit status: 0
[2025-12-16 16:23:49] 2025-12-16 15:23:49,616 [wrapper] pandaids: 6929784013
[2025-12-16 16:23:49] 2025-12-16 15:23:49,638 [wrapper] cleanup supervisor_pilot 1472160 1452289
[2025-12-16 16:23:49] 2025-12-16 15:23:49,641 [wrapper] Test setup, not cleaning
[2025-12-16 16:23:49] 2025-12-16 15:23:49,645 [wrapper] apfmon messages muted
[2025-12-16 16:23:49] 2025-12-16 15:23:49,649 [wrapper] ==== wrapper stdout END ====
[2025-12-16 16:23:49] 2025-12-16 15:23:49,652 [wrapper] ==== wrapper stderr END ====
[2025-12-16 16:23:49]  *** Error codes and diagnostics ***
[2025-12-16 16:23:49]     "exeErrorCode": 0,
[2025-12-16 16:23:49]     "exeErrorDiag": "",
[2025-12-16 16:23:49]     "pilotErrorCode": 0,
[2025-12-16 16:23:49]     "pilotErrorDiag": "",
[2025-12-16 16:23:49]  *** Listing of results directory ***
[2025-12-16 16:23:49] total 443524
[2025-12-16 16:23:49] -rw-r--r-- 1 boinc boinc    579449 Dec 15 14:27 pilot3.tar.gz
[2025-12-16 16:23:49] -rwx------ 1 boinc boinc     36322 Dec 15 14:27 runpilot2-wrapper.sh
[2025-12-16 16:23:49] -rw-r--r-- 1 boinc boinc      5112 Dec 15 14:27 queuedata.json
[2025-12-16 16:23:49] -rw-r--r-- 1 boinc boinc       100 Dec 16 14:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 16:23:49] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 14:42 run_atlas
[2025-12-16 16:23:49] -rw-r--r-- 1 boinc boinc       105 Dec 16 14:42 job.xml
[2025-12-16 16:23:49] -rw-r--r-- 2 boinc boinc 226299391 Dec 16 14:42 EVNT.47898761._000678.pool.root.1
[2025-12-16 16:23:49] drwxrwx--x 2 boinc boinc      4096 Dec 16 14:42 shared
[2025-12-16 16:23:49] -rw-r--r-- 2 boinc boinc    592394 Dec 16 14:42 input.tar.gz
[2025-12-16 16:23:49] -rw-r--r-- 2 boinc boinc     15847 Dec 16 14:42 start_atlas.sh
[2025-12-16 16:23:49] -rw-r--r-- 1 boinc boinc         0 Dec 16 14:42 boinc_setup_complete
[2025-12-16 16:23:49] -rw-r--r-- 1 boinc boinc      6370 Dec 16 14:42 init_data.xml
[2025-12-16 16:23:49] -rw-r--r-- 1 boinc boinc         0 Dec 16 14:42 boinc_lockfile
[2025-12-16 16:23:49] -rw-r--r-- 1 boinc boinc      2508 Dec 16 14:42 pandaJob.out
[2025-12-16 16:23:49] -rw------- 1 boinc boinc    987355 Dec 16 14:42 agis_schedconf.cvmfs.json
[2025-12-16 16:23:49] -rw------- 1 boinc boinc   1516240 Dec 16 14:42 agis_ddmendpoints.agis.ALL.json
[2025-12-16 16:23:49] drwx------ 5 boinc boinc      4096 Dec 16 14:42 pilot3
[2025-12-16 16:23:49] -rw------- 1 boinc boinc 221673151 Dec 16 16:22 HITS.47898763._016959.pool.root.1
[2025-12-16 16:23:49] -rw-r--r-- 1 boinc boinc       529 Dec 16 16:22 boinc_task_state.xml
[2025-12-16 16:23:49] -rw------- 1 boinc boinc      1018 Dec 16 16:23 memory_monitor_summary.json
[2025-12-16 16:23:49] -rw------- 1 boinc boinc        95 Dec 16 16:23 pilot_heartbeat.json
[2025-12-16 16:23:49] -rw------- 1 boinc boinc    275754 Dec 16 16:23 log.47898763._016959.job.log.tgz.1
[2025-12-16 16:23:49] -rw------- 1 boinc boinc      7760 Dec 16 16:23 heartbeat.json
[2025-12-16 16:23:49] -rw-r--r-- 1 boinc boinc      8192 Dec 16 16:23 boinc_mmap_file
[2025-12-16 16:23:49] -rw-r--r-- 1 boinc boinc        27 Dec 16 16:23 wrapper_checkpoint.txt
[2025-12-16 16:23:49] -rw------- 1 boinc boinc       747 Dec 16 16:23 pilotlog.txt
[2025-12-16 16:23:49] -rw------- 1 boinc boinc    876388 Dec 16 16:23 log.47898763._016959.job.log.1
[2025-12-16 16:23:49] -rw------- 1 boinc boinc       357 Dec 16 16:23 output.list
[2025-12-16 16:23:49] -rw-r--r-- 1 boinc boinc       620 Dec 16 16:23 runtime_log
[2025-12-16 16:23:49] -rw------- 1 boinc boinc   1167360 Dec 16 16:23 result.tar.gz
[2025-12-16 16:23:49] -rw-r--r-- 1 boinc boinc      8902 Dec 16 16:23 runtime_log.err
[2025-12-16 16:23:49] -rw------- 1 boinc boinc       660 Dec 16 16:23 e9vNDmrmNp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDms0XKDmJyTNPm.diag
[2025-12-16 16:23:49] -rw-r--r-- 1 boinc boinc     10906 Dec 16 16:23 stderr.txt
[2025-12-16 16:23:49] HITS file was successfully produced:
[2025-12-16 16:23:49] -rw------- 1 boinc boinc 221673151 Dec 16 16:22 shared/HITS.pool.root.1
[2025-12-16 16:23:49]  *** Contents of shared directory: ***
[2025-12-16 16:23:49] total 439220
[2025-12-16 16:23:49] -rw-r--r-- 2 boinc boinc 226299391 Dec 16 14:42 ATLAS.root_0
[2025-12-16 16:23:49] -rw-r--r-- 2 boinc boinc    592394 Dec 16 14:42 input.tar.gz
[2025-12-16 16:23:49] -rw-r--r-- 2 boinc boinc     15847 Dec 16 14:42 start_atlas.sh
[2025-12-16 16:23:49] -rw------- 1 boinc boinc 221673151 Dec 16 16:22 HITS.pool.root.1
[2025-12-16 16:23:49] -rw------- 1 boinc boinc   1167360 Dec 16 16:23 result.tar.gz
16:23:50 (1448498): run_atlas exited; CPU time 22978.044706
16:23:50 (1448498): called boinc_finish(0)

</stderr_txt>
]]>

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