Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:59 (385862): wrapper (7.7.26015): starting
00:02:59 (385862): wrapper: running run_atlas (--nthreads 12)
[2025-12-16 00:02:59] Arguments: --nthreads 12
[2025-12-16 00:02:59] Threads: 12
[2025-12-16 00:02:59] Checking for CVMFS
[2025-12-16 00:03:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 00:03:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 00:03:01] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 00:03:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 00:03:01] 2.13.2.0 7154 62079 167284 154058 0 82 22726792 40960001 10492 16776704 0 58464880 99.705 52771726 38363 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-16 00:03:01] CVMFS is ok
[2025-12-16 00:03:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 00:03:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 00:03:01] Further information can be found at the LHC@home message board.
[2025-12-16 00:03:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 00:03:01] Checking for apptainer binary...
[2025-12-16 00:03:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 00:03:01] Running /usr/bin/apptainer --version
[2025-12-16 00:03:01] apptainer version 1.4.4-1.el9
[2025-12-16 00:03:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 00:03:03] c-211-7.aglt2.org
[2025-12-16 00:03:03] apptainer works
[2025-12-16 00:03:03] Set ATHENA_PROC_NUMBER=12
[2025-12-16 00:03:03] Set ATHENA_CORE_NUMBER=12
[2025-12-16 00:03:03] Starting ATLAS job with PandaID=6929962346
[2025-12-16 00:03:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 14:34:24]  *** The last 200 lines of the pilot log: ***
[2025-12-16 14:34:24] 2025-12-16 19:33:19,276 | INFO     | monitor loop #3183: job 0:6929962346 is in state 'finished'
[2025-12-16 14:34:24] 2025-12-16 19:33:19,276 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 14:34:24] 2025-12-16 19:33:19,997 | INFO     | PID=394083 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 14:34:24] 2025-12-16 19:33:19,997 | INFO     | .. there are 8 such processes running
[2025-12-16 14:34:24] 2025-12-16 19:33:21,003 | INFO     | time since job start (52177s) is within the limit (174528.0s)
[2025-12-16 14:34:24] 2025-12-16 19:33:21,787 | INFO     | monitor loop #3184: job 0:6929962346 is in state 'finished'
[2025-12-16 14:34:24] 2025-12-16 19:33:21,809 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 14:34:24] 2025-12-16 19:33:22,918 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 14:34:24] 2025-12-16 19:33:22,964 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2452.062125000001
[2025-12-16 14:34:24] 2025-12-16 19:33:23,012 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6929962346/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 14:34:24] 2025-12-16 19:33:23,016 | INFO     | extracted standard info from prmon json
[2025-12-16 14:34:24] 2025-12-16 19:33:23,016 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 14:34:24] 2025-12-16 19:33:23,016 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 14:34:24] 2025-12-16 19:33:23,017 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 14:34:24] 2025-12-16 19:33:23,017 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 14:34:24] 2025-12-16 19:33:23,031 | INFO     | fitting pss+swap vs Time
[2025-12-16 14:34:24] 2025-12-16 19:33:23,032 | INFO     | sum of square deviations: 192447614612.1053
[2025-12-16 14:34:24] 2025-12-16 19:33:23,040 | INFO     | time since job start (52179s) is within the limit (174528.0s)
[2025-12-16 14:34:24] 2025-12-16 19:33:23,050 | INFO     | sum of deviations: 1615842747994.1565
[2025-12-16 14:34:24] 2025-12-16 19:33:23,051 | INFO     | mean x: 1765887519.6143024
[2025-12-16 14:34:24] 2025-12-16 19:33:23,051 | INFO     | mean y: 2569508.0855803047
[2025-12-16 14:34:24] 2025-12-16 19:33:23,051 | INFO     | intersect: -14824304538.097975
[2025-12-16 14:34:24] 2025-12-16 19:33:23,052 | INFO     | chi2: 7.1727782646616305
[2025-12-16 14:34:24] 2025-12-16 19:33:23,054 | INFO     | sum of square deviations: 189083283440.20758
[2025-12-16 14:34:24] 2025-12-16 19:33:23,072 | INFO     | sum of deviations: 1660893957989.3145
[2025-12-16 14:34:24] 2025-12-16 19:33:23,073 | INFO     | mean x: 1765887367.1179245
[2025-12-16 14:34:24] 2025-12-16 19:33:23,073 | INFO     | mean y: 2571537.6568396227
[2025-12-16 14:34:24] 2025-12-16 19:33:23,073 | INFO     | intersect: -15508856046.914827
[2025-12-16 14:34:24] 2025-12-16 19:33:23,074 | INFO     | chi2: 6.448649214746374
[2025-12-16 14:34:24] 2025-12-16 19:33:23,074 | INFO     | current chi2=6.448649214746374 (change=10.095517011627802 %)
[2025-12-16 14:34:24] 2025-12-16 19:33:23,074 | INFO     | right removable region: 847
[2025-12-16 14:34:24] 2025-12-16 19:33:23,076 | INFO     | sum of square deviations: 189082963800.2077
[2025-12-16 14:34:24] 2025-12-16 19:33:23,095 | INFO     | sum of deviations: 1353285452512.5898
[2025-12-16 14:34:24] 2025-12-16 19:33:23,095 | INFO     | mean x: 1765887672.1179245
[2025-12-16 14:34:24] 2025-12-16 19:33:23,095 | INFO     | mean y: 2581402.9941037735
[2025-12-16 14:34:24] 2025-12-16 19:33:23,095 | INFO     | intersect: -12636051128.562841
[2025-12-16 14:34:24] 2025-12-16 19:33:23,097 | INFO     | chi2: 4.054556662524045
[2025-12-16 14:34:24] 2025-12-16 19:33:23,097 | INFO     | current chi2=4.054556662524045 (change=43.47299591708046 %)
[2025-12-16 14:34:24] 2025-12-16 19:33:23,098 | INFO     | sum of square deviations: 185757755588.28387
[2025-12-16 14:34:24] 2025-12-16 19:33:23,117 | INFO     | sum of deviations: 1200888303183.9714
[2025-12-16 14:34:24] 2025-12-16 19:33:23,117 | INFO     | mean x: 1765887824.6215897
[2025-12-16 14:34:24] 2025-12-16 19:33:23,117 | INFO     | mean y: 2588386.9027283513
[2025-12-16 14:34:24] 2025-12-16 19:33:23,117 | INFO     | intersect: -11413538097.86843
[2025-12-16 14:34:24] 2025-12-16 19:33:23,119 | INFO     | chi2: 3.088748125938027
[2025-12-16 14:34:24] 2025-12-16 19:33:23,119 | INFO     | current chi2=3.088748125938027 (change=23.82032406928511 %)
[2025-12-16 14:34:24] 2025-12-16 19:33:23,119 | INFO     | left removable region: 20
[2025-12-16 14:34:24] 2025-12-16 19:33:23,120 | INFO     | sum of square deviations: 175379868770.25232
[2025-12-16 14:34:24] 2025-12-16 19:33:23,138 | INFO     | sum of deviations: 1076709505574.7404
[2025-12-16 14:34:24] 2025-12-16 19:33:23,138 | INFO     | mean x: 1765887946.6324062
[2025-12-16 14:34:24] 2025-12-16 19:33:23,138 | INFO     | mean y: 2598441.5320435306
[2025-12-16 14:34:24] 2025-12-16 19:33:23,139 | INFO     | intersect: -10838716193.101072
[2025-12-16 14:34:24] 2025-12-16 19:33:23,140 | INFO     | chi2: 1.899913389071312
[2025-12-16 14:34:24] 2025-12-16 19:33:23,140 | INFO     | current memory leak: 6.14 B/s (using 827 data points, chi2=1.90)
[2025-12-16 14:34:24] 2025-12-16 19:33:23,141 | INFO     | could have reported an average CPU frequency of 2545 MHz (32 samples)
[2025-12-16 14:34:24] 2025-12-16 19:33:23,142 | INFO     | ..............................
[2025-12-16 14:34:24] 2025-12-16 19:33:23,142 | INFO     | . Timing measurements:
[2025-12-16 14:34:24] 2025-12-16 19:33:23,142 | INFO     | . get job = 0 s
[2025-12-16 14:34:24] 2025-12-16 19:33:23,142 | INFO     | . initial setup = 3 s
[2025-12-16 14:34:24] 2025-12-16 19:33:23,142 | INFO     | . payload setup = 32 s
[2025-12-16 14:34:24] 2025-12-16 19:33:23,142 | INFO     | . stage-in = 0 s
[2025-12-16 14:34:24] 2025-12-16 19:33:23,142 | INFO     | . payload execution = 52048 s
[2025-12-16 14:34:24] 2025-12-16 19:33:23,142 | INFO     | . stage-out = 4 s
[2025-12-16 14:34:24] 2025-12-16 19:33:23,143 | INFO     | . log creation = 0 s
[2025-12-16 14:34:24] 2025-12-16 19:33:23,143 | INFO     | ..............................
[2025-12-16 14:34:24] 2025-12-16 19:33:23,254 | INFO     | 
[2025-12-16 14:34:24] 2025-12-16 19:33:23,254 | INFO     | job summary report
[2025-12-16 14:34:24] 2025-12-16 19:33:23,254 | INFO     | --------------------------------------------------
[2025-12-16 14:34:24] 2025-12-16 19:33:23,254 | INFO     | PanDA job id: 6929962346
[2025-12-16 14:34:24] 2025-12-16 19:33:23,254 | INFO     | task id: 47886831
[2025-12-16 14:34:24] 2025-12-16 19:33:23,255 | INFO     | errors: (none)
[2025-12-16 14:34:24] 2025-12-16 19:33:23,255 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 14:34:24] 2025-12-16 19:33:23,255 | INFO     | pilot state: finished 
[2025-12-16 14:34:24] 2025-12-16 19:33:23,255 | INFO     | transexitcode: 0
[2025-12-16 14:34:24] 2025-12-16 19:33:23,255 | INFO     | exeerrorcode: 0
[2025-12-16 14:34:24] 2025-12-16 19:33:23,255 | INFO     | exeerrordiag: 
[2025-12-16 14:34:24] 2025-12-16 19:33:23,255 | INFO     | exitcode: 0
[2025-12-16 14:34:24] 2025-12-16 19:33:23,255 | INFO     | exitmsg: OK
[2025-12-16 14:34:24] 2025-12-16 19:33:23,255 | INFO     | cpuconsumptiontime: 61575 s
[2025-12-16 14:34:24] 2025-12-16 19:33:23,256 | INFO     | nevents: 400
[2025-12-16 14:34:24] 2025-12-16 19:33:23,256 | INFO     | neventsw: 0
[2025-12-16 14:34:24] 2025-12-16 19:33:23,256 | INFO     | pid: 413641
[2025-12-16 14:34:24] 2025-12-16 19:33:23,256 | INFO     | pgrp: 413641
[2025-12-16 14:34:24] 2025-12-16 19:33:23,256 | INFO     | corecount: 12
[2025-12-16 14:34:24] 2025-12-16 19:33:23,256 | INFO     | event service: False
[2025-12-16 14:34:24] 2025-12-16 19:33:23,256 | INFO     | sizes: {0: 2283760, 1: 2283816, 3: 2283844, 5: 2284043, 6: 2284099, 7: 2284127, 18: 2284283, 29: 2284311, 32: 2284601, 40: 2284629, 52086: 2332866, 52091: 2341864,
[2025-12-16 14:34:24] 2025-12-16 19:33:23,256 | INFO     | --------------------------------------------------
[2025-12-16 14:34:24] 2025-12-16 19:33:23,256 | INFO     | 
[2025-12-16 14:34:24] 2025-12-16 19:33:23,257 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-12-16 14:34:24] 2025-12-16 19:33:23,279 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 14:34:24] 2025-12-16 19:33:23,279 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 14:34:24] 2025-12-16 19:33:23,280 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 14:34:24] 2025-12-16 19:33:23,280 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 14:34:24] 2025-12-16 19:33:23,280 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 14:34:24] 2025-12-16 19:33:23,280 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 14:34:24] 2025-12-16 19:33:23,280 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 14:34:24] 2025-12-16 19:33:23,280 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 14:34:24] 2025-12-16 19:33:23,280 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 14:34:24] 2025-12-16 19:33:23,281 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 14:34:24] 2025-12-16 19:33:23,281 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 14:34:24] 2025-12-16 19:33:23,281 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 14:34:24] 2025-12-16 19:33:23,281 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 14:34:24] 2025-12-16 19:33:23,281 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 14:34:24] 2025-12-16 19:33:23,281 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 14:34:24] 2025-12-16 19:33:23,281 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 14:34:24] 2025-12-16 19:33:23,281 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 14:34:24] 2025-12-16 19:33:23,281 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 14:34:24] 2025-12-16 19:33:23,282 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 14:34:24] 2025-12-16 19:33:23,282 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 14:34:24] 2025-12-16 19:33:23,282 | INFO     | job 6929962346 has completed (purged errors)
[2025-12-16 14:34:24] 2025-12-16 19:33:23,282 | INFO     | overall cleanup function is called
[2025-12-16 14:34:24] 2025-12-16 19:33:24,349 | INFO     | --- collectZombieJob: --- 10, [413641]
[2025-12-16 14:34:24] 2025-12-16 19:33:24,349 | INFO     | zombie collector waiting for pid 413641
[2025-12-16 14:34:24] 2025-12-16 19:33:24,349 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 14:34:24] 2025-12-16 19:33:24,349 | INFO     | collected zombie processes
[2025-12-16 14:34:24] 2025-12-16 19:33:24,349 | INFO     | will attempt to kill all subprocesses of pid=413641
[2025-12-16 14:34:24] 2025-12-16 19:33:24,657 | INFO     | process IDs to be killed: [413641] (in reverse order)
[2025-12-16 14:34:24] 2025-12-16 19:33:24,737 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 14:34:24] 2025-12-16 19:33:24,737 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 14:34:24] 2025-12-16 19:33:24,747 | INFO     | did not find any defunct processes belonging to 413641
[2025-12-16 14:34:24] 2025-12-16 19:33:24,757 | INFO     | did not find any defunct processes belonging to 413641
[2025-12-16 14:34:24] 2025-12-16 19:33:24,757 | INFO     | ready for new job
[2025-12-16 14:34:24] 2025-12-16 19:33:24,757 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 14:34:24] 2025-12-16 19:33:24,762 | INFO     | ***************************************
[2025-12-16 14:34:24] 2025-12-16 19:33:24,762 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 14:34:24] 2025-12-16 19:33:24,762 | INFO     | ***************************************
[2025-12-16 14:34:24] 2025-12-16 19:33:24,762 | INFO     | 
[2025-12-16 14:34:24] 2025-12-16 19:33:24,765 | INFO     | architecture information:
[2025-12-16 14:34:24] 2025-12-16 19:33:24,766 | INFO     | executing command: cat /etc/os-release
[2025-12-16 14:34:24] 2025-12-16 19:33:24,783 | INFO     | cat /etc/os-release:
[2025-12-16 14:34:24] NAME="CentOS Linux"
[2025-12-16 14:34:24] VERSION="7 (Core)"
[2025-12-16 14:34:24] ID="centos"
[2025-12-16 14:34:24] ID_LIKE="rhel fedora"
[2025-12-16 14:34:24] VERSION_ID="7"
[2025-12-16 14:34:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 14:34:24] ANSI_COLOR="0;31"
[2025-12-16 14:34:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 14:34:24] HOME_URL="https://www.centos.org/"
[2025-12-16 14:34:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 14:34:24] 
[2025-12-16 14:34:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 14:34:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 14:34:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 14:34:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 14:34:24] 
[2025-12-16 14:34:24] 2025-12-16 19:33:24,784 | INFO     | ***************************************
[2025-12-16 14:34:24] 2025-12-16 19:33:25,287 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-12-16 14:34:24] 2025-12-16 19:33:25,370 | INFO     | sufficient remaining disk space (63842549760 B)
[2025-12-16 14:34:24] 2025-12-16 19:33:25,371 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 14:34:24] 2025-12-16 19:33:25,371 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 14:34:24] 2025-12-16 19:33:25,371 | INFO     | update_server=False
[2025-12-16 14:34:24] 2025-12-16 19:33:25,371 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 14:34:24] 2025-12-16 19:33:25,372 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 14:34:24] 2025-12-16 19:33:25,372 | INFO     | aborting loop
[2025-12-16 14:34:24] 2025-12-16 19:33:25,426 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 14:34:24] 2025-12-16 19:33:25,620 | INFO     | all payload control threads have been joined
[2025-12-16 14:34:24] 2025-12-16 19:33:26,051 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 14:34:24] 2025-12-16 19:33:26,233 | INFO     | all job control threads have been joined
[2025-12-16 14:34:24] 2025-12-16 19:33:26,377 | INFO     | [job] retrieve thread has finished
[2025-12-16 14:34:24] 2025-12-16 19:33:26,378 | INFO     | [job] job monitor thread has finished
[2025-12-16 14:34:24] 2025-12-16 19:33:26,450 | INFO     | all data control threads have been joined
[2025-12-16 14:34:24] 2025-12-16 19:33:26,626 | INFO     | [payload] control thread has finished
[2025-12-16 14:34:24] 2025-12-16 19:33:26,702 | INFO     | [payload] validate_post thread has finished
[2025-12-16 14:34:24] 2025-12-16 19:33:26,848 | INFO     | [data] copytool_in thread has finished
[2025-12-16 14:34:24] 2025-12-16 19:33:26,940 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 14:34:24] 2025-12-16 19:33:27,239 | INFO     | [job] control thread has finished
[2025-12-16 14:34:24] 2025-12-16 19:33:27,256 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 14:34:24] 2025-12-16 19:33:27,299 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 14:34:24] 2025-12-16 19:33:27,325 | INFO     | [job] validate thread has finished
[2025-12-16 14:34:24] 2025-12-16 19:33:27,456 | INFO     | [data] control thread has finished
[2025-12-16 14:34:24] 2025-12-16 19:33:27,605 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 14:34:24] 2025-12-16 19:33:27,959 | INFO     | [payload] failed_post thread has finished
[2025-12-16 14:34:24] 2025-12-16 19:33:28,060 | INFO     | [data] copytool_out thread has finished
[2025-12-16 14:34:24] 2025-12-16 19:33:28,278 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 14:34:24] 2025-12-16 19:33:29,285 | INFO     | [job] queue monitor thread has finished
[2025-12-16 14:34:24] 2025-12-16 19:33:29,470 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 14:34:24] 2025-12-16 19:33:46,858 [wrapper] supervise_pilot (15 min periods counter: 59)
[2025-12-16 14:34:24] 2025-12-16 19:33:56,907 | INFO     | PID=394083 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 14:34:24] 2025-12-16 19:33:56,908 | INFO     | .. there are 8 such processes running
[2025-12-16 14:34:24] 2025-12-16 19:33:56,909 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 14:34:24] 2025-12-16 19:33:56,909 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 14:34:24] 2025-12-16 19:33:56,909 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 14:34:24] 2025-12-16 19:34:17,417 | INFO     | [monitor] cgroup control has ended
[2025-12-16 14:34:24] 2025-12-16 19:34:17,684 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139916138862400)>', '<ExcThread(monitor, started 139915648026368)>']
[2025-12-16 14:34:24] 2025-12-16 19:34:18,033 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 14:34:24] 2025-12-16 19:34:18,033 | INFO     | [monitor] control thread has ended
[2025-12-16 14:34:24] 2025-12-16 19:34:22,718 | INFO     | all workflow threads have been joined
[2025-12-16 14:34:24] 2025-12-16 19:34:22,718 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 14:34:24] 2025-12-16 19:34:22,718 | INFO     | traces error code: 0
[2025-12-16 14:34:24] 2025-12-16 19:34:22,719 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 14:34:24] 2025-12-16 19:34:23,666 [wrapper] ==== pilot stdout END ====
[2025-12-16 14:34:24] 2025-12-16 19:34:23,668 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 14:34:24] 2025-12-16 19:34:23,671 [wrapper] pilotpid: 394083
[2025-12-16 14:34:24] 2025-12-16 19:34:23,674 [wrapper] Pilot exit status: 0
[2025-12-16 14:34:24] 2025-12-16 19:34:23,746 [wrapper] pandaids: 6929962346
[2025-12-16 14:34:24] 2025-12-16 19:34:23,838 [wrapper] cleanup supervisor_pilot 1623045 394084
[2025-12-16 14:34:24] 2025-12-16 19:34:23,841 [wrapper] Test setup, not cleaning
[2025-12-16 14:34:24] 2025-12-16 19:34:23,848 [wrapper] apfmon messages muted
[2025-12-16 14:34:24] 2025-12-16 19:34:23,868 [wrapper] ==== wrapper stdout END ====
[2025-12-16 14:34:24] 2025-12-16 19:34:23,953 [wrapper] ==== wrapper stderr END ====
[2025-12-16 14:34:24]  *** Error codes and diagnostics ***
[2025-12-16 14:34:24]     "exeErrorCode": 0,
[2025-12-16 14:34:24]     "exeErrorDiag": "",
[2025-12-16 14:34:24]     "pilotErrorCode": 0,
[2025-12-16 14:34:24]     "pilotErrorDiag": "",
[2025-12-16 14:34:24]  *** Listing of results directory ***
[2025-12-16 14:34:24] total 351728
[2025-12-16 14:34:24] -rw-r--r--. 1 boincer umatlas    579449 Dec 15 13:24 pilot3.tar.gz
[2025-12-16 14:34:24] -rwx------. 1 boincer umatlas     36322 Dec 15 13:25 runpilot2-wrapper.sh
[2025-12-16 14:34:24] -rw-r--r--. 1 boincer umatlas      5112 Dec 15 13:27 queuedata.json
[2025-12-16 14:34:24] -rw-r--r--. 1 boincer umatlas       100 Dec 16 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 14:34:24] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 16 00:02 run_atlas
[2025-12-16 14:34:24] -rw-r--r--. 1 boincer umatlas       105 Dec 16 00:02 job.xml
[2025-12-16 14:34:24] -rw-r--r--. 2 boincer umatlas 193542163 Dec 16 00:02 EVNT.47886829._000351.pool.root.1
[2025-12-16 14:34:24] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 00:02 start_atlas.sh
[2025-12-16 14:34:24] drwxrwx--x. 2 boincer umatlas      4096 Dec 16 00:02 shared
[2025-12-16 14:34:24] -rw-r--r--. 2 boincer umatlas    592412 Dec 16 00:02 input.tar.gz
[2025-12-16 14:34:24] -rw-r--r--. 1 boincer umatlas         0 Dec 16 00:02 boinc_lockfile
[2025-12-16 14:34:24] -rw-r--r--. 1 boincer umatlas      2536 Dec 16 00:03 pandaJob.out
[2025-12-16 14:34:24] -rw-------. 1 boincer umatlas        57 Dec 16 00:03 setup.sh.local
[2025-12-16 14:34:24] -rw-------. 1 boincer umatlas    994531 Dec 16 00:03 agis_schedconf.cvmfs.json
[2025-12-16 14:34:24] drwx------. 5 boincer umatlas      4096 Dec 16 00:03 pilot3
[2025-12-16 14:34:24] -rw-r--r--. 1 boincer umatlas      6611 Dec 16 14:27 init_data.xml
[2025-12-16 14:34:24] -rw-------. 1 boincer umatlas 147654000 Dec 16 14:30 HITS.47886831._009266.pool.root.1
[2025-12-16 14:34:24] -rw-r--r--. 1 boincer umatlas       530 Dec 16 14:31 boinc_task_state.xml
[2025-12-16 14:34:24] -rw-------. 1 boincer umatlas      1049 Dec 16 14:32 memory_monitor_summary.json
[2025-12-16 14:34:24] -rw-------. 1 boincer umatlas   1516240 Dec 16 14:32 agis_ddmendpoints.agis.ALL.json
[2025-12-16 14:34:24] -rw-------. 1 boincer umatlas    990018 Dec 16 14:32 log.47886831._009266.job.log.tgz.1
[2025-12-16 14:34:24] -rw-------. 1 boincer umatlas      7833 Dec 16 14:33 heartbeat.json
[2025-12-16 14:34:24] -rw-------. 1 boincer umatlas        95 Dec 16 14:33 pilot_heartbeat.json
[2025-12-16 14:34:24] -rw-r--r--. 1 boincer umatlas        27 Dec 16 14:33 wrapper_checkpoint.txt
[2025-12-16 14:34:24] -rw-r--r--. 1 boincer umatlas      8192 Dec 16 14:33 boinc_mmap_file
[2025-12-16 14:34:24] -rw-------. 1 boincer umatlas      4822 Dec 16 14:34 pilotlog.txt
[2025-12-16 14:34:24] -rw-------. 1 boincer umatlas   6534430 Dec 16 14:34 log.47886831._009266.job.log.1
[2025-12-16 14:34:24] -rw-------. 1 boincer umatlas       357 Dec 16 14:34 output.list
[2025-12-16 14:34:24] -rw-r--r--. 1 boincer umatlas       620 Dec 16 14:34 runtime_log
[2025-12-16 14:34:24] -rw-------. 1 boincer umatlas   7546880 Dec 16 14:34 result.tar.gz
[2025-12-16 14:34:24] -rw-------. 1 boincer umatlas       660 Dec 16 14:34 yaXKDmmRSp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5VYKDmvOwmVo.diag
[2025-12-16 14:34:24] -rw-r--r--. 1 boincer umatlas      9340 Dec 16 14:34 runtime_log.err
[2025-12-16 14:34:24] -rw-r--r--. 1 boincer umatlas     21493 Dec 16 14:34 stderr.txt
[2025-12-16 14:34:24] HITS file was successfully produced:
[2025-12-16 14:34:24] -rw-------. 1 boincer umatlas 147654000 Dec 16 14:30 shared/HITS.pool.root.1
[2025-12-16 14:34:24]  *** Contents of shared directory: ***
[2025-12-16 14:34:24] total 341176
[2025-12-16 14:34:24] -rw-r--r--. 2 boincer umatlas 193542163 Dec 16 00:02 ATLAS.root_0
[2025-12-16 14:34:24] -rw-r--r--. 2 boincer umatlas     15847 Dec 16 00:02 start_atlas.sh
[2025-12-16 14:34:24] -rw-r--r--. 2 boincer umatlas    592412 Dec 16 00:02 input.tar.gz
[2025-12-16 14:34:24] -rw-------. 1 boincer umatlas 147654000 Dec 16 14:30 HITS.pool.root.1
[2025-12-16 14:34:24] -rw-------. 1 boincer umatlas   7546880 Dec 16 14:34 result.tar.gz
14:34:26 (385862): run_atlas exited; CPU time 63363.360559
14:34:26 (385862): called boinc_finish(0)

</stderr_txt>
]]>

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