Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:10:41 (11289): wrapper (7.7.26015): starting
11:10:41 (11289): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 11:10:41] Arguments: --nthreads 8
[2025-12-16 11:10:41] Threads: 8
[2025-12-16 11:10:41] Checking for CVMFS
[2025-12-16 11:10:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 11:10:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 11:10:43] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 11:10:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 11:10:44] 2.11.2.0 6904 718 57372 154065 2 217 12895997 25165824 4712 130560 0 862196 99.990 149842 2083 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-16 11:10:44] CVMFS is ok
[2025-12-16 11:10:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 11:10:44] Checking for apptainer binary...
[2025-12-16 11:10:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 11:10:44] Running /usr/bin/apptainer --version
[2025-12-16 11:10:44] apptainer version 1.3.2-1.el7
[2025-12-16 11:10:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 11:10:48] cg-vwn474.simple-grid.lan
[2025-12-16 11:10:48] apptainer works
[2025-12-16 11:10:48] Set ATHENA_PROC_NUMBER=8
[2025-12-16 11:10:48] Set ATHENA_CORE_NUMBER=8
[2025-12-16 11:10:48] Starting ATLAS job with PandaID=6930227120
[2025-12-16 11:10:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 15:36:31]  *** The last 200 lines of the pilot log: ***
[2025-12-16 15:36:31] 2025-12-16 14:35:47,973 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 15:36:31] 2025-12-16 14:35:48,904 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 15:36:31] 2025-12-16 14:35:48,905 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-12-16 15:36:31] 2025-12-16 14:35:48,912 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6930227120/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 15:36:31] 2025-12-16 14:35:48,913 | INFO     | extracted standard info from prmon json
[2025-12-16 15:36:31] 2025-12-16 14:35:48,913 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 15:36:31] 2025-12-16 14:35:48,914 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 15:36:31] 2025-12-16 14:35:48,914 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 15:36:31] 2025-12-16 14:35:48,914 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 15:36:31] 2025-12-16 14:35:48,919 | INFO     | fitting pss+swap vs Time
[2025-12-16 15:36:31] 2025-12-16 14:35:48,920 | INFO     | sum of square deviations: 4787066500.0
[2025-12-16 15:36:31] 2025-12-16 14:35:48,922 | INFO     | sum of deviations: 37757806901.0
[2025-12-16 15:36:31] 2025-12-16 14:35:48,922 | INFO     | mean x: 1765888073.0
[2025-12-16 15:36:31] 2025-12-16 14:35:48,923 | INFO     | mean y: 2448439.6465863455
[2025-12-16 15:36:31] 2025-12-16 14:35:48,923 | INFO     | intersect: -13925927292.989048
[2025-12-16 15:36:31] 2025-12-16 14:35:48,923 | INFO     | chi2: 5.901132872190473
[2025-12-16 15:36:31] 2025-12-16 14:35:48,924 | INFO     | sum of square deviations: 4504437945.0
[2025-12-16 15:36:31] 2025-12-16 14:35:48,926 | INFO     | sum of deviations: 54228301214.5
[2025-12-16 15:36:31] 2025-12-16 14:35:48,926 | INFO     | mean x: 1765887920.5
[2025-12-16 15:36:31] 2025-12-16 14:35:48,926 | INFO     | mean y: 2457176.0778688523
[2025-12-16 15:36:31] 2025-12-16 14:35:48,926 | INFO     | intersect: -21256821613.680447
[2025-12-16 15:36:31] 2025-12-16 14:35:48,927 | INFO     | chi2: 5.09846050631303
[2025-12-16 15:36:31] 2025-12-16 14:35:48,927 | INFO     | current chi2=5.09846050631303 (change=13.602004619487495 %)
[2025-12-16 15:36:31] 2025-12-16 14:35:48,927 | INFO     | right removable region: 243
[2025-12-16 15:36:31] 2025-12-16 14:35:48,934 | INFO     | sum of square deviations: 4504437945.0
[2025-12-16 15:36:31] 2025-12-16 14:35:48,937 | INFO     | sum of deviations: -43978276929.500015
[2025-12-16 15:36:31] 2025-12-16 14:35:48,937 | INFO     | mean x: 1765888225.5
[2025-12-16 15:36:31] 2025-12-16 14:35:48,937 | INFO     | mean y: 2492491.12704918
[2025-12-16 15:36:31] 2025-12-16 14:35:48,937 | INFO     | intersect: 17243427399.285133
[2025-12-16 15:36:31] 2025-12-16 14:35:48,938 | INFO     | chi2: 1.6531258832232125
[2025-12-16 15:36:31] 2025-12-16 14:35:48,938 | INFO     | current chi2=1.6531258832232125 (change=71.98629620739958 %)
[2025-12-16 15:36:31] 2025-12-16 14:35:48,938 | INFO     | sum of square deviations: 4233158440.0
[2025-12-16 15:36:31] 2025-12-16 14:35:48,940 | INFO     | sum of deviations: -66053320703.0
[2025-12-16 15:36:31] 2025-12-16 14:35:48,940 | INFO     | mean x: 1765888378.0
[2025-12-16 15:36:31] 2025-12-16 14:35:48,940 | INFO     | mean y: 2504783.209205021
[2025-12-16 15:36:31] 2025-12-16 14:35:48,941 | INFO     | intersect: 27557058436.470173
[2025-12-16 15:36:31] 2025-12-16 14:35:48,945 | INFO     | chi2: 1.095761864246239
[2025-12-16 15:36:31] 2025-12-16 14:35:48,946 | INFO     | current chi2=1.095761864246239 (change=33.71576385279521 %)
[2025-12-16 15:36:31] 2025-12-16 14:35:48,946 | INFO     | sum of square deviations: 3972995422.5
[2025-12-16 15:36:31] 2025-12-16 14:35:48,948 | INFO     | sum of deviations: -61015231974.5
[2025-12-16 15:36:31] 2025-12-16 14:35:48,948 | INFO     | mean x: 1765888530.5
[2025-12-16 15:36:31] 2025-12-16 14:35:48,948 | INFO     | mean y: 2501806.9017094015
[2025-12-16 15:36:31] 2025-12-16 14:35:48,948 | INFO     | intersect: 27122114812.085438
[2025-12-16 15:36:31] 2025-12-16 14:35:48,949 | INFO     | chi2: 1.0845517871613424
[2025-12-16 15:36:31] 2025-12-16 14:35:48,949 | INFO     | current chi2=1.0845517871613424 (change=1.0230395353837125 %)
[2025-12-16 15:36:31] 2025-12-16 14:35:48,949 | INFO     | left removable region: 30
[2025-12-16 15:36:31] 2025-12-16 14:35:48,949 | INFO     | sum of square deviations: 2996454322.0
[2025-12-16 15:36:31] 2025-12-16 14:35:48,951 | INFO     | sum of deviations: -19262266826.0
[2025-12-16 15:36:31] 2025-12-16 14:35:48,951 | INFO     | mean x: 1765888805.0
[2025-12-16 15:36:31] 2025-12-16 14:35:48,951 | INFO     | mean y: 2496082.0140845072
[2025-12-16 15:36:31] 2025-12-16 14:35:48,951 | INFO     | intersect: 11354253089.360277
[2025-12-16 15:36:31] 2025-12-16 14:35:48,952 | INFO     | chi2: 0.1407350256717515
[2025-12-16 15:36:31] 2025-12-16 14:35:48,952 | INFO     | current memory leak: -6.43 B/s (using 213 data points, chi2=0.14)
[2025-12-16 15:36:31] 2025-12-16 14:35:48,953 | INFO     | could have reported an average CPU frequency of 2249 MHz (12 samples)
[2025-12-16 15:36:31] 2025-12-16 14:35:48,953 | INFO     | ..............................
[2025-12-16 15:36:31] 2025-12-16 14:35:48,953 | INFO     | . Timing measurements:
[2025-12-16 15:36:31] 2025-12-16 14:35:48,953 | INFO     | . get job = 0 s
[2025-12-16 15:36:31] 2025-12-16 14:35:48,953 | INFO     | . initial setup = 9 s
[2025-12-16 15:36:31] 2025-12-16 14:35:48,953 | INFO     | . payload setup = 130 s
[2025-12-16 15:36:31] 2025-12-16 14:35:48,953 | INFO     | . stage-in = 0 s
[2025-12-16 15:36:31] 2025-12-16 14:35:48,953 | INFO     | . payload execution = 15323 s
[2025-12-16 15:36:31] 2025-12-16 14:35:48,954 | INFO     | . stage-out = 1 s
[2025-12-16 15:36:31] 2025-12-16 14:35:48,954 | INFO     | . log creation = 0 s
[2025-12-16 15:36:31] 2025-12-16 14:35:48,954 | INFO     | ..............................
[2025-12-16 15:36:31] 2025-12-16 14:35:49,098 | INFO     | 
[2025-12-16 15:36:31] 2025-12-16 14:35:49,099 | INFO     | job summary report
[2025-12-16 15:36:31] 2025-12-16 14:35:49,099 | INFO     | --------------------------------------------------
[2025-12-16 15:36:31] 2025-12-16 14:35:49,099 | INFO     | PanDA job id: 6930227120
[2025-12-16 15:36:31] 2025-12-16 14:35:49,099 | INFO     | task id: 47886933
[2025-12-16 15:36:31] 2025-12-16 14:35:49,099 | INFO     | errors: (none)
[2025-12-16 15:36:31] 2025-12-16 14:35:49,099 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 15:36:31] 2025-12-16 14:35:49,099 | INFO     | pilot state: finished 
[2025-12-16 15:36:31] 2025-12-16 14:35:49,099 | INFO     | transexitcode: 0
[2025-12-16 15:36:31] 2025-12-16 14:35:49,100 | INFO     | exeerrorcode: 0
[2025-12-16 15:36:31] 2025-12-16 14:35:49,100 | INFO     | exeerrordiag: 
[2025-12-16 15:36:31] 2025-12-16 14:35:49,100 | INFO     | exitcode: 0
[2025-12-16 15:36:31] 2025-12-16 14:35:49,100 | INFO     | exitmsg: OK
[2025-12-16 15:36:31] 2025-12-16 14:35:49,100 | INFO     | cpuconsumptiontime: 57783 s
[2025-12-16 15:36:31] 2025-12-16 14:35:49,100 | INFO     | nevents: 400
[2025-12-16 15:36:31] 2025-12-16 14:35:49,100 | INFO     | neventsw: 0
[2025-12-16 15:36:31] 2025-12-16 14:35:49,100 | INFO     | pid: 21653
[2025-12-16 15:36:31] 2025-12-16 14:35:49,100 | INFO     | pgrp: 21653
[2025-12-16 15:36:31] 2025-12-16 14:35:49,100 | INFO     | corecount: 8
[2025-12-16 15:36:31] 2025-12-16 14:35:49,100 | INFO     | event service: False
[2025-12-16 15:36:31] 2025-12-16 14:35:49,101 | INFO     | sizes: {0: 2283794, 1: 2283993, 12: 2283993, 22: 2284021, 33: 2284049, 44: 2284105, 55: 2284261, 65: 2284289, 76: 2284317, 81: 2284635, 87: 2284663, 15459: 2315417
[2025-12-16 15:36:31] 2025-12-16 14:35:49,101 | INFO     | --------------------------------------------------
[2025-12-16 15:36:31] 2025-12-16 14:35:49,101 | INFO     | 
[2025-12-16 15:36:31] 2025-12-16 14:35:49,101 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-12-16 15:36:31] 2025-12-16 14:35:49,473 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 15:36:31] 2025-12-16 14:35:49,473 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 15:36:31] 2025-12-16 14:35:49,473 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 15:36:31] 2025-12-16 14:35:49,473 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 15:36:31] 2025-12-16 14:35:49,473 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 15:36:31] 2025-12-16 14:35:49,473 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 15:36:31] 2025-12-16 14:35:49,474 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 15:36:31] 2025-12-16 14:35:49,474 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 15:36:31] 2025-12-16 14:35:49,474 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 15:36:31] 2025-12-16 14:35:49,474 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 15:36:31] 2025-12-16 14:35:49,474 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 15:36:31] 2025-12-16 14:35:49,474 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 15:36:31] 2025-12-16 14:35:49,474 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 15:36:31] 2025-12-16 14:35:49,474 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 15:36:31] 2025-12-16 14:35:49,474 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 15:36:31] 2025-12-16 14:35:49,474 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 15:36:31] 2025-12-16 14:35:49,475 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 15:36:31] 2025-12-16 14:35:49,475 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 15:36:31] 2025-12-16 14:35:49,475 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 15:36:31] 2025-12-16 14:35:49,475 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 15:36:31] 2025-12-16 14:35:49,475 | INFO     | job 6930227120 has completed (purged errors)
[2025-12-16 15:36:31] 2025-12-16 14:35:49,476 | INFO     | overall cleanup function is called
[2025-12-16 15:36:31] 2025-12-16 14:35:50,484 | INFO     | --- collectZombieJob: --- 10, [21653]
[2025-12-16 15:36:31] 2025-12-16 14:35:50,484 | INFO     | zombie collector waiting for pid 21653
[2025-12-16 15:36:31] 2025-12-16 14:35:50,485 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 15:36:31] 2025-12-16 14:35:50,485 | INFO     | collected zombie processes
[2025-12-16 15:36:31] 2025-12-16 14:35:50,485 | INFO     | will attempt to kill all subprocesses of pid=21653
[2025-12-16 15:36:31] 2025-12-16 14:35:50,591 | INFO     | process IDs to be killed: [21653] (in reverse order)
[2025-12-16 15:36:31] 2025-12-16 14:35:51,415 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 15:36:31] 2025-12-16 14:35:51,415 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 15:36:31] 2025-12-16 14:35:51,418 | INFO     | did not find any defunct processes belonging to 21653
[2025-12-16 15:36:31] 2025-12-16 14:35:51,421 | INFO     | did not find any defunct processes belonging to 21653
[2025-12-16 15:36:31] 2025-12-16 14:35:51,421 | INFO     | ready for new job
[2025-12-16 15:36:31] 2025-12-16 14:35:51,421 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 15:36:31] 2025-12-16 14:35:51,423 | INFO     | ***************************************
[2025-12-16 15:36:31] 2025-12-16 14:35:51,423 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 15:36:31] 2025-12-16 14:35:51,423 | INFO     | ***************************************
[2025-12-16 15:36:31] 2025-12-16 14:35:51,423 | INFO     | 
[2025-12-16 15:36:31] 2025-12-16 14:35:51,429 | INFO     | pilot is running in a VM
[2025-12-16 15:36:31] 2025-12-16 14:35:51,429 | INFO     | architecture information:
[2025-12-16 15:36:31] 2025-12-16 14:35:51,444 | INFO     | executing command: cat /etc/os-release
[2025-12-16 15:36:31] 2025-12-16 14:35:51,741 | INFO     | cat /etc/os-release:
[2025-12-16 15:36:31] NAME="CentOS Linux"
[2025-12-16 15:36:31] VERSION="7 (Core)"
[2025-12-16 15:36:31] ID="centos"
[2025-12-16 15:36:31] ID_LIKE="rhel fedora"
[2025-12-16 15:36:31] VERSION_ID="7"
[2025-12-16 15:36:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 15:36:31] ANSI_COLOR="0;31"
[2025-12-16 15:36:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 15:36:31] HOME_URL="https://www.centos.org/"
[2025-12-16 15:36:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 15:36:31] 
[2025-12-16 15:36:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 15:36:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 15:36:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 15:36:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 15:36:31] 
[2025-12-16 15:36:31] 2025-12-16 14:35:51,741 | INFO     | ***************************************
[2025-12-16 15:36:31] 2025-12-16 14:35:52,244 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-12-16 15:36:31] 2025-12-16 14:35:52,487 | INFO     | sufficient remaining disk space (496010002432 B)
[2025-12-16 15:36:31] 2025-12-16 14:35:52,487 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 15:36:31] 2025-12-16 14:35:52,487 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 15:36:31] 2025-12-16 14:35:52,487 | INFO     | update_server=False
[2025-12-16 15:36:31] 2025-12-16 14:35:52,487 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 15:36:31] 2025-12-16 14:35:52,488 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 15:36:31] 2025-12-16 14:35:52,493 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 15:36:31] 2025-12-16 14:35:52,493 | INFO     | aborting loop
[2025-12-16 15:36:31] 2025-12-16 14:35:52,817 | INFO     | all payload control threads have been joined
[2025-12-16 15:36:31] 2025-12-16 14:35:52,998 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 15:36:31] 2025-12-16 14:35:53,250 | INFO     | all data control threads have been joined
[2025-12-16 15:36:31] 2025-12-16 14:35:53,493 | INFO     | [job] retrieve thread has finished
[2025-12-16 15:36:31] 2025-12-16 14:35:53,499 | INFO     | [job] job monitor thread has finished
[2025-12-16 15:36:31] 2025-12-16 14:35:53,564 | INFO     | [data] copytool_in thread has finished
[2025-12-16 15:36:31] 2025-12-16 14:35:53,621 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 15:36:31] 2025-12-16 14:35:53,823 | INFO     | [payload] control thread has finished
[2025-12-16 15:36:31] 2025-12-16 14:35:53,828 | INFO     | all job control threads have been joined
[2025-12-16 15:36:31] 2025-12-16 14:35:53,857 | INFO     | [job] validate thread has finished
[2025-12-16 15:36:31] 2025-12-16 14:35:54,113 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 15:36:31] 2025-12-16 14:35:54,143 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 15:36:31] 2025-12-16 14:35:54,256 | INFO     | [data] control thread has finished
[2025-12-16 15:36:31] 2025-12-16 14:35:54,292 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 15:36:31] 2025-12-16 14:35:54,390 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 15:36:31] 2025-12-16 14:35:54,437 | INFO     | [payload] failed_post thread has finished
[2025-12-16 15:36:31] 2025-12-16 14:35:54,441 | INFO     | [payload] validate_post thread has finished
[2025-12-16 15:36:31] 2025-12-16 14:35:54,495 | INFO     | [data] copytool_out thread has finished
[2025-12-16 15:36:31] 2025-12-16 14:35:54,834 | INFO     | [job] control thread has finished
[2025-12-16 15:36:31] 2025-12-16 14:35:55,119 | INFO     | [job] queue monitor thread has finished
[2025-12-16 15:36:31] 2025-12-16 14:35:57,007 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 15:36:31] 2025-12-16 14:36:20,926 | INFO     | PID=15079 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 15:36:31] 2025-12-16 14:36:20,926 | INFO     | .. there are 9 such processes running
[2025-12-16 15:36:31] 2025-12-16 14:36:20,928 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 15:36:31] 2025-12-16 14:36:20,928 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 15:36:31] 2025-12-16 14:36:20,928 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 15:36:31] 2025-12-16 14:36:22,293 | INFO     | [monitor] cgroup control has ended
[2025-12-16 15:36:31] 2025-12-16 14:36:22,474 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139834229675840)>', '<ExcThread(monitor, started 139833800390400)>']
[2025-12-16 15:36:31] 2025-12-16 14:36:22,940 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 15:36:31] 2025-12-16 14:36:22,940 | INFO     | [monitor] control thread has ended
[2025-12-16 15:36:31] 2025-12-16 14:36:27,500 | INFO     | all workflow threads have been joined
[2025-12-16 15:36:31] 2025-12-16 14:36:27,500 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 15:36:31] 2025-12-16 14:36:27,501 | INFO     | traces error code: 0
[2025-12-16 15:36:31] 2025-12-16 14:36:27,501 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 15:36:31] 2025-12-16 14:36:27,755 [wrapper] ==== pilot stdout END ====
[2025-12-16 15:36:31] 2025-12-16 14:36:27,848 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 15:36:31] 2025-12-16 14:36:27,954 [wrapper] pilotpid: 15079
[2025-12-16 15:36:31] 2025-12-16 14:36:28,051 [wrapper] Pilot exit status: 0
[2025-12-16 15:36:31] 2025-12-16 14:36:28,417 [wrapper] pandaids: 6930227120
[2025-12-16 15:36:31] 2025-12-16 14:36:29,211 [wrapper] cleanup supervisor_pilot  8852 15080
[2025-12-16 15:36:31] 2025-12-16 14:36:29,314 [wrapper] Test setup, not cleaning
[2025-12-16 15:36:31] 2025-12-16 14:36:29,400 [wrapper] apfmon messages muted
[2025-12-16 15:36:31] 2025-12-16 14:36:29,514 [wrapper] ==== wrapper stdout END ====
[2025-12-16 15:36:31] 2025-12-16 14:36:29,559 [wrapper] ==== wrapper stderr END ====
[2025-12-16 15:36:31]  *** Error codes and diagnostics ***
[2025-12-16 15:36:31]     "exeErrorCode": 0,
[2025-12-16 15:36:31]     "exeErrorDiag": "",
[2025-12-16 15:36:31]     "pilotErrorCode": 0,
[2025-12-16 15:36:31]     "pilotErrorDiag": "",
[2025-12-16 15:36:31]  *** Listing of results directory ***
[2025-12-16 15:36:31] total 344428
[2025-12-16 15:36:31] -rw-r--r--. 1 boinc boinc    579449 Dec 16 00:23 pilot3.tar.gz
[2025-12-16 15:36:31] -rwx------. 1 boinc boinc     36322 Dec 16 00:27 runpilot2-wrapper.sh
[2025-12-16 15:36:31] -rw-r--r--. 1 boinc boinc      5112 Dec 16 00:28 queuedata.json
[2025-12-16 15:36:31] -rw-r--r--. 1 boinc boinc       100 Dec 16 11:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 15:36:31] -rwxr-xr-x. 1 boinc boinc      7986 Dec 16 11:10 run_atlas
[2025-12-16 15:36:31] -rw-r--r--. 1 boinc boinc       105 Dec 16 11:10 job.xml
[2025-12-16 15:36:31] -rw-r--r--. 1 boinc boinc      6393 Dec 16 11:10 init_data.xml
[2025-12-16 15:36:31] -rw-r--r--. 2 boinc boinc 191656282 Dec 16 11:10 EVNT.47886929._000314.pool.root.1
[2025-12-16 15:36:31] -rw-r--r--. 2 boinc boinc     15847 Dec 16 11:10 start_atlas.sh
[2025-12-16 15:36:31] drwxrwx--x. 2 boinc boinc        68 Dec 16 11:10 shared
[2025-12-16 15:36:31] -rw-r--r--. 2 boinc boinc    592392 Dec 16 11:10 input.tar.gz
[2025-12-16 15:36:31] -rw-r--r--. 1 boinc boinc         0 Dec 16 11:10 boinc_lockfile
[2025-12-16 15:36:31] -rw-r--r--. 1 boinc boinc      2513 Dec 16 11:10 pandaJob.out
[2025-12-16 15:36:31] -rw-------. 1 boinc boinc    990636 Dec 16 11:13 agis_schedconf.cvmfs.json
[2025-12-16 15:36:31] drwx------. 5 boinc boinc      4096 Dec 16 11:13 pilot3
[2025-12-16 15:36:31] -rw-------. 1 boinc boinc 151995340 Dec 16 15:33 HITS.47886933._006038.pool.root.1
[2025-12-16 15:36:31] -rw-r--r--. 1 boinc boinc       531 Dec 16 15:34 boinc_task_state.xml
[2025-12-16 15:36:31] -rw-------. 1 boinc boinc      1018 Dec 16 15:34 memory_monitor_summary.json
[2025-12-16 15:36:31] -rw-------. 1 boinc boinc   1516240 Dec 16 15:34 agis_ddmendpoints.agis.ALL.json
[2025-12-16 15:36:31] -rw-------. 1 boinc boinc    469352 Dec 16 15:34 log.47886933._006038.job.log.tgz.1
[2025-12-16 15:36:31] -rw-------. 1 boinc boinc      7778 Dec 16 15:35 heartbeat.json
[2025-12-16 15:36:31] -rw-r--r--. 1 boinc boinc      8192 Dec 16 15:36 boinc_mmap_file
[2025-12-16 15:36:31] -rw-r--r--. 1 boinc boinc        28 Dec 16 15:36 wrapper_checkpoint.txt
[2025-12-16 15:36:31] -rw-------. 1 boinc boinc        95 Dec 16 15:36 pilot_heartbeat.json
[2025-12-16 15:36:31] -rw-------. 1 boinc boinc      4884 Dec 16 15:36 pilotlog.txt
[2025-12-16 15:36:31] -rw-------. 1 boinc boinc   2099373 Dec 16 15:36 log.47886933._006038.job.log.1
[2025-12-16 15:36:31] -rw-------. 1 boinc boinc       357 Dec 16 15:36 output.list
[2025-12-16 15:36:31] -rw-r--r--. 1 boinc boinc       620 Dec 16 15:36 runtime_log
[2025-12-16 15:36:31] -rw-------. 1 boinc boinc   2590720 Dec 16 15:36 result.tar.gz
[2025-12-16 15:36:31] -rw-r--r--. 1 boinc boinc      8817 Dec 16 15:36 runtime_log.err
[2025-12-16 15:36:31] -rw-------. 1 boinc boinc       657 Dec 16 15:36 o3uLDmR9Wp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmTZUKDmuMAwGm.diag
[2025-12-16 15:36:31] -rw-r--r--. 1 boinc boinc     20773 Dec 16 15:36 stderr.txt
[2025-12-16 15:36:31] HITS file was successfully produced:
[2025-12-16 15:36:31] -rw-------. 1 boinc boinc 151995340 Dec 16 15:33 shared/HITS.pool.root.1
[2025-12-16 15:36:31]  *** Contents of shared directory: ***
[2025-12-16 15:36:31] total 338732
[2025-12-16 15:36:31] -rw-r--r--. 2 boinc boinc 191656282 Dec 16 11:10 ATLAS.root_0
[2025-12-16 15:36:31] -rw-r--r--. 2 boinc boinc     15847 Dec 16 11:10 start_atlas.sh
[2025-12-16 15:36:31] -rw-r--r--. 2 boinc boinc    592392 Dec 16 11:10 input.tar.gz
[2025-12-16 15:36:31] -rw-------. 1 boinc boinc 151995340 Dec 16 15:33 HITS.pool.root.1
[2025-12-16 15:36:31] -rw-------. 1 boinc boinc   2590720 Dec 16 15:36 result.tar.gz
15:36:33 (11289): run_atlas exited; CPU time 57985.417645
15:36:33 (11289): called boinc_finish(0)

</stderr_txt>
]]>

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