Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:23:01 (4057586): wrapper (7.7.26015): starting
22:23:01 (4057586): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 22:23:01] Arguments: --nthreads 4
[2025-12-16 22:23:01] Threads: 4
[2025-12-16 22:23:01] Checking for CVMFS
[2025-12-16 22:23:01] No cvmfs_config command found, will try listing directly
[2025-12-16 22:23:01] CVMFS is ok
[2025-12-16 22:23:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 22:23:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 22:23:01] Further information can be found at the LHC@home message board.
[2025-12-16 22:23:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 22:23:01] Checking for apptainer binary...
[2025-12-16 22:23:01] which: no apptainer in ((null))
[2025-12-16 22:23:01] apptainer is not installed, using version from CVMFS
[2025-12-16 22:23:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 22:23:02] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot108/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-12-16 22:23:02] apptainer works
[2025-12-16 22:23:02] Set ATHENA_PROC_NUMBER=4
[2025-12-16 22:23:02] Set ATHENA_CORE_NUMBER=4
[2025-12-16 22:23:02] Starting ATLAS job with PandaID=6930226580
[2025-12-16 22:23:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot108/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 01:19:11]  *** The last 200 lines of the pilot log: ***
[2025-12-17 01:19:11] 2025-12-17 00:13:28,316 | INFO     | time since job start (10212s) is within the limit (174528.0s)
[2025-12-17 01:19:11] 2025-12-17 00:13:29,504 | INFO     | monitor loop #696: job 0:6930226580 is in state 'finished'
[2025-12-17 01:19:11] 2025-12-17 00:13:29,504 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 01:19:11] 2025-12-17 00:13:30,321 | INFO     | time since job start (10214s) is within the limit (174528.0s)
[2025-12-17 01:19:11] 2025-12-17 00:13:32,006 | INFO     | monitor loop #697: job 0:6930226580 is in state 'finished'
[2025-12-17 01:19:11] 2025-12-17 00:13:32,007 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 01:19:11] 2025-12-17 00:13:32,326 | INFO     | time since job start (10216s) is within the limit (174528.0s)
[2025-12-17 01:19:11] 2025-12-17 00:13:33,242 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-17 01:19:11] 2025-12-17 00:13:33,261 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2714.6703828125014
[2025-12-17 01:19:11] 2025-12-17 00:13:33,284 | INFO     | using path: /scratch/boinc/var/slot108/slots/0/PanDA_Pilot-6930226580/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 01:19:11] 2025-12-17 00:13:33,285 | INFO     | extracted standard info from prmon json
[2025-12-17 01:19:11] 2025-12-17 00:13:33,285 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 01:19:11] 2025-12-17 00:13:33,285 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 01:19:11] 2025-12-17 00:13:33,286 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 01:19:11] 2025-12-17 00:13:33,286 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 01:19:11] 2025-12-17 00:13:33,289 | INFO     | fitting pss+swap vs Time
[2025-12-17 01:19:11] 2025-12-17 00:13:33,289 | INFO     | sum of square deviations: 1444149868.0
[2025-12-17 01:19:11] 2025-12-17 00:13:33,290 | INFO     | sum of deviations: -11206928539.999998
[2025-12-17 01:19:11] 2025-12-17 00:13:33,290 | INFO     | mean x: 1765925295.0
[2025-12-17 01:19:11] 2025-12-17 00:13:33,291 | INFO     | mean y: 2350246.095808383
[2025-12-17 01:19:11] 2025-12-17 00:13:33,291 | INFO     | intersect: 13706328639.592718
[2025-12-17 01:19:11] 2025-12-17 00:13:33,291 | INFO     | chi2: 1.396230890867892
[2025-12-17 01:19:11] 2025-12-17 00:13:33,291 | INFO     | sum of square deviations: 1318277740.5
[2025-12-17 01:19:11] 2025-12-17 00:13:33,292 | INFO     | sum of deviations: -10559035767.000002
[2025-12-17 01:19:11] 2025-12-17 00:13:33,292 | INFO     | mean x: 1765925142.5
[2025-12-17 01:19:11] 2025-12-17 00:13:33,292 | INFO     | mean y: 2351031.160493827
[2025-12-17 01:19:11] 2025-12-17 00:13:33,292 | INFO     | intersect: 14146917209.172262
[2025-12-17 01:19:11] 2025-12-17 00:13:33,293 | INFO     | chi2: 1.3951518775139877
[2025-12-17 01:19:11] 2025-12-17 00:13:33,293 | INFO     | current chi2=1.3951518775139877 (change=0.07728043842616504 %)
[2025-12-17 01:19:11] 2025-12-17 00:13:33,293 | INFO     | right removable region: 161
[2025-12-17 01:19:11] 2025-12-17 00:13:33,293 | INFO     | sum of square deviations: 1318277740.5
[2025-12-17 01:19:11] 2025-12-17 00:13:33,294 | INFO     | sum of deviations: -30419533222.500004
[2025-12-17 01:19:11] 2025-12-17 00:13:33,294 | INFO     | mean x: 1765925447.5
[2025-12-17 01:19:11] 2025-12-17 00:13:33,294 | INFO     | mean y: 2373107.0555555555
[2025-12-17 01:19:11] 2025-12-17 00:13:33,294 | INFO     | intersect: 40751470333.19084
[2025-12-17 01:19:11] 2025-12-17 00:13:33,295 | INFO     | chi2: 0.09866208849041709
[2025-12-17 01:19:11] 2025-12-17 00:13:33,295 | INFO     | current chi2=0.09866208849041709 (change=92.93368388167598 %)
[2025-12-17 01:19:11] 2025-12-17 00:13:33,295 | INFO     | sum of square deviations: 1199940638.0
[2025-12-17 01:19:11] 2025-12-17 00:13:33,296 | INFO     | sum of deviations: -28586779407.999996
[2025-12-17 01:19:11] 2025-12-17 00:13:33,296 | INFO     | mean x: 1765925600.0
[2025-12-17 01:19:11] 2025-12-17 00:13:33,296 | INFO     | mean y: 2370721.5541401273
[2025-12-17 01:19:11] 2025-12-17 00:13:33,296 | INFO     | intersect: 42072889861.80184
[2025-12-17 01:19:11] 2025-12-17 00:13:33,296 | INFO     | chi2: 0.09523703128926157
[2025-12-17 01:19:11] 2025-12-17 00:13:33,296 | INFO     | current chi2=0.09523703128926157 (change=3.471502837169506 %)
[2025-12-17 01:19:11] 2025-12-17 00:13:33,297 | INFO     | left removable region: 20
[2025-12-17 01:19:11] 2025-12-17 00:13:33,297 | INFO     | sum of square deviations: 869188390.0
[2025-12-17 01:19:11] 2025-12-17 00:13:33,297 | INFO     | sum of deviations: -21440530588.0
[2025-12-17 01:19:11] 2025-12-17 00:13:33,298 | INFO     | mean x: 1765925722.0
[2025-12-17 01:19:11] 2025-12-17 00:13:33,298 | INFO     | mean y: 2363585.510638298
[2025-12-17 01:19:11] 2025-12-17 00:13:33,298 | INFO     | intersect: 43562982772.65485
[2025-12-17 01:19:11] 2025-12-17 00:13:33,298 | INFO     | chi2: 0.08950026735196821
[2025-12-17 01:19:11] 2025-12-17 00:13:33,298 | INFO     | current memory leak: -24.67 B/s (using 141 data points, chi2=0.09)
[2025-12-17 01:19:11] 2025-12-17 00:13:33,299 | INFO     | could have reported an average CPU frequency of 2699 MHz (9 samples)
[2025-12-17 01:19:11] 2025-12-17 00:13:33,299 | INFO     | ..............................
[2025-12-17 01:19:11] 2025-12-17 00:13:33,299 | INFO     | . Timing measurements:
[2025-12-17 01:19:11] 2025-12-17 00:13:33,299 | INFO     | . get job = 0 s
[2025-12-17 01:19:11] 2025-12-17 00:13:33,299 | INFO     | . initial setup = 1 s
[2025-12-17 01:19:11] 2025-12-17 00:13:33,299 | INFO     | . payload setup = 9 s
[2025-12-17 01:19:11] 2025-12-17 00:13:33,299 | INFO     | . stage-in = 0 s
[2025-12-17 01:19:11] 2025-12-17 00:13:33,299 | INFO     | . payload execution = 10174 s
[2025-12-17 01:19:11] 2025-12-17 00:13:33,299 | INFO     | . stage-out = 1 s
[2025-12-17 01:19:11] 2025-12-17 00:13:33,300 | INFO     | . log creation = 0 s
[2025-12-17 01:19:11] 2025-12-17 00:13:33,300 | INFO     | ..............................
[2025-12-17 01:19:11] 2025-12-17 00:13:33,836 | INFO     | 
[2025-12-17 01:19:11] 2025-12-17 00:13:33,836 | INFO     | job summary report
[2025-12-17 01:19:11] 2025-12-17 00:13:33,837 | INFO     | --------------------------------------------------
[2025-12-17 01:19:11] 2025-12-17 00:13:33,837 | INFO     | PanDA job id: 6930226580
[2025-12-17 01:19:11] 2025-12-17 00:13:33,837 | INFO     | task id: 47886831
[2025-12-17 01:19:11] 2025-12-17 00:13:33,837 | INFO     | errors: (none)
[2025-12-17 01:19:11] 2025-12-17 00:13:33,837 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 01:19:11] 2025-12-17 00:13:33,837 | INFO     | pilot state: finished 
[2025-12-17 01:19:11] 2025-12-17 00:13:33,837 | INFO     | transexitcode: 0
[2025-12-17 01:19:11] 2025-12-17 00:13:33,837 | INFO     | exeerrorcode: 0
[2025-12-17 01:19:11] 2025-12-17 00:13:33,837 | INFO     | exeerrordiag: 
[2025-12-17 01:19:11] 2025-12-17 00:13:33,837 | INFO     | exitcode: 0
[2025-12-17 01:19:11] 2025-12-17 00:13:33,838 | INFO     | exitmsg: OK
[2025-12-17 01:19:11] 2025-12-17 00:13:33,838 | INFO     | cpuconsumptiontime: 38872 s
[2025-12-17 01:19:11] 2025-12-17 00:13:33,838 | INFO     | nevents: 400
[2025-12-17 01:19:11] 2025-12-17 00:13:33,838 | INFO     | neventsw: 0
[2025-12-17 01:19:11] 2025-12-17 00:13:33,838 | INFO     | pid: 4079433
[2025-12-17 01:19:11] 2025-12-17 00:13:33,838 | INFO     | pgrp: 4079433
[2025-12-17 01:19:11] 2025-12-17 00:13:33,838 | INFO     | corecount: 4
[2025-12-17 01:19:11] 2025-12-17 00:13:33,838 | INFO     | event service: False
[2025-12-17 01:19:11] 2025-12-17 00:13:33,838 | INFO     | sizes: {0: 2283834, 1: 2284033, 8: 2284295, 12: 2284323, 10188: 2313479, 10189: 2322685, 10199: 2322887}
[2025-12-17 01:19:11] 2025-12-17 00:13:33,838 | INFO     | --------------------------------------------------
[2025-12-17 01:19:11] 2025-12-17 00:13:33,838 | INFO     | 
[2025-12-17 01:19:11] 2025-12-17 00:13:33,839 | INFO     | executing command: ls -lF /scratch/boinc/var/slot108/slots/0
[2025-12-17 01:19:11] 2025-12-17 00:13:33,868 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 01:19:11] 2025-12-17 00:13:33,868 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 01:19:11] 2025-12-17 00:13:33,868 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 01:19:11] 2025-12-17 00:13:33,868 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 01:19:11] 2025-12-17 00:13:33,868 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 01:19:11] 2025-12-17 00:13:33,868 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 01:19:11] 2025-12-17 00:13:33,868 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 01:19:11] 2025-12-17 00:13:33,869 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 01:19:11] 2025-12-17 00:13:33,869 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 01:19:11] 2025-12-17 00:13:33,869 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 01:19:11] 2025-12-17 00:13:33,869 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 01:19:11] 2025-12-17 00:13:33,869 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 01:19:11] 2025-12-17 00:13:33,869 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 01:19:11] 2025-12-17 00:13:33,869 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 01:19:11] 2025-12-17 00:13:33,869 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 01:19:11] 2025-12-17 00:13:33,869 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 01:19:11] 2025-12-17 00:13:33,869 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 01:19:11] 2025-12-17 00:13:33,869 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 01:19:11] 2025-12-17 00:13:33,870 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 01:19:11] 2025-12-17 00:13:33,870 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 01:19:11] 2025-12-17 00:13:33,870 | INFO     | job 6930226580 has completed (purged errors)
[2025-12-17 01:19:11] 2025-12-17 00:13:33,870 | INFO     | overall cleanup function is called
[2025-12-17 01:19:11] 2025-12-17 00:13:34,879 | INFO     | --- collectZombieJob: --- 10, [4079433]
[2025-12-17 01:19:11] 2025-12-17 00:13:34,880 | INFO     | zombie collector waiting for pid 4079433
[2025-12-17 01:19:11] 2025-12-17 00:13:34,880 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 01:19:11] 2025-12-17 00:13:34,880 | INFO     | collected zombie processes
[2025-12-17 01:19:11] 2025-12-17 00:13:34,880 | INFO     | will attempt to kill all subprocesses of pid=4079433
[2025-12-17 01:19:11] 2025-12-17 00:13:35,644 | INFO     | process IDs to be killed: [4079433] (in reverse order)
[2025-12-17 01:19:11] 2025-12-17 00:13:35,890 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 01:19:11] 2025-12-17 00:13:35,890 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 01:19:11] 2025-12-17 00:13:35,922 | INFO     | did not find any defunct processes belonging to 4079433
[2025-12-17 01:19:11] 2025-12-17 00:13:35,952 | INFO     | did not find any defunct processes belonging to 4079433
[2025-12-17 01:19:11] 2025-12-17 00:13:35,952 | INFO     | ready for new job
[2025-12-17 01:19:11] 2025-12-17 00:13:35,952 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 01:19:11] 2025-12-17 00:13:35,955 | INFO     | ***************************************
[2025-12-17 01:19:11] 2025-12-17 00:13:35,955 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 01:19:11] 2025-12-17 00:13:35,955 | INFO     | ***************************************
[2025-12-17 01:19:11] 2025-12-17 00:13:35,955 | INFO     | 
[2025-12-17 01:19:11] 2025-12-17 00:13:35,963 | INFO     | architecture information:
[2025-12-17 01:19:11] 2025-12-17 00:13:35,964 | INFO     | executing command: cat /etc/os-release
[2025-12-17 01:19:11] 2025-12-17 00:13:35,991 | INFO     | cat /etc/os-release:
[2025-12-17 01:19:11] NAME="CentOS Linux"
[2025-12-17 01:19:11] VERSION="7 (Core)"
[2025-12-17 01:19:11] ID="centos"
[2025-12-17 01:19:11] ID_LIKE="rhel fedora"
[2025-12-17 01:19:11] VERSION_ID="7"
[2025-12-17 01:19:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 01:19:11] ANSI_COLOR="0;31"
[2025-12-17 01:19:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 01:19:11] HOME_URL="https://www.centos.org/"
[2025-12-17 01:19:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 01:19:11] 
[2025-12-17 01:19:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 01:19:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 01:19:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 01:19:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 01:19:11] 
[2025-12-17 01:19:11] 2025-12-17 00:13:35,991 | INFO     | ***************************************
[2025-12-17 01:19:11] 2025-12-17 00:13:36,494 | INFO     | executing command: df -mP /scratch/boinc/var/slot108/slots/0
[2025-12-17 01:19:11] 2025-12-17 00:13:36,519 | INFO     | sufficient remaining disk space (3334944587776 B)
[2025-12-17 01:19:11] 2025-12-17 00:13:36,520 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 01:19:11] 2025-12-17 00:13:36,520 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 01:19:11] 2025-12-17 00:13:36,520 | INFO     | update_server=False
[2025-12-17 01:19:11] 2025-12-17 00:13:36,520 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 01:19:11] 2025-12-17 00:13:36,556 | INFO     | all job control threads have been joined
[2025-12-17 01:19:11] 2025-12-17 00:13:36,959 | INFO     | all data control threads have been joined
[2025-12-17 01:19:11] 2025-12-17 00:13:37,016 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-17 01:19:11] 2025-12-17 00:13:37,017 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-17 01:19:11] 2025-12-17 00:13:37,017 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 01:19:11] 2025-12-17 00:13:37,017 | INFO     | will abort loop
[2025-12-17 01:19:11] 2025-12-17 00:13:37,146 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 01:19:11] 2025-12-17 00:13:37,423 | INFO     | all payload control threads have been joined
[2025-12-17 01:19:11] 2025-12-17 00:13:37,526 | INFO     | [job] retrieve thread has finished
[2025-12-17 01:19:11] 2025-12-17 00:13:37,561 | INFO     | [job] control thread has finished
[2025-12-17 01:19:11] 2025-12-17 00:13:37,589 | INFO     | [job] validate thread has finished
[2025-12-17 01:19:11] 2025-12-17 00:13:37,658 | INFO     | [data] copytool_in thread has finished
[2025-12-17 01:19:11] 2025-12-17 00:13:37,938 | INFO     | [payload] failed_post thread has finished
[2025-12-17 01:19:11] 2025-12-17 00:13:37,965 | INFO     | [data] control thread has finished
[2025-12-17 01:19:11] 2025-12-17 00:13:38,022 | INFO     | [job] job monitor thread has finished
[2025-12-17 01:19:11] 2025-12-17 00:13:38,115 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 01:19:11] 2025-12-17 00:13:38,399 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 01:19:11] 2025-12-17 00:13:38,405 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 01:19:11] 2025-12-17 00:13:38,429 | INFO     | [payload] control thread has finished
[2025-12-17 01:19:11] 2025-12-17 00:13:38,432 | INFO     | [payload] validate_post thread has finished
[2025-12-17 01:19:11] 2025-12-17 00:13:38,687 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 01:19:11] 2025-12-17 00:13:38,764 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 01:19:11] 2025-12-17 00:13:39,151 | INFO     | [data] copytool_out thread has finished
[2025-12-17 01:19:11] 2025-12-17 00:13:39,237 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 01:19:11] 2025-12-17 00:13:39,404 | INFO     | [job] queue monitor thread has finished
[2025-12-17 01:19:11] 2025-12-17 00:13:43,244 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 01:19:11] 2025-12-17 00:14:06,413 | INFO     | PID=4064285 has CPU usage=10.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-17 01:19:11] 2025-12-17 00:14:06,413 | INFO     | .. there are 9 such processes running
[2025-12-17 01:19:11] 2025-12-17 00:14:06,414 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 01:19:11] 2025-12-17 00:14:06,414 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 01:19:11] 2025-12-17 00:14:06,417 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 01:19:11] 2025-12-17 00:14:33,044 | INFO     | [monitor] cgroup control has ended
[2025-12-17 01:19:11] 2025-12-17 00:14:33,359 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23364929038144)>', '<ExcThread(monitor, started 23364349449984)>']
[2025-12-17 01:19:11] 2025-12-17 00:14:33,550 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 01:19:11] 2025-12-17 00:14:33,550 | INFO     | [monitor] control thread has ended
[2025-12-17 01:19:11] 2025-12-17 00:14:38,383 | INFO     | all workflow threads have been joined
[2025-12-17 01:19:11] 2025-12-17 00:14:38,384 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 01:19:11] 2025-12-17 00:14:38,384 | INFO     | traces error code: 0
[2025-12-17 01:19:11] 2025-12-17 00:14:38,384 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 01:19:11] 2025-12-17 00:14:38,528 [wrapper] ==== pilot stdout END ====
[2025-12-17 01:19:11] 2025-12-17 00:14:38,532 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 01:19:11] 2025-12-17 00:14:38,536 [wrapper] pilotpid: 4064285
[2025-12-17 01:19:11] 2025-12-17 00:14:38,540 [wrapper] Pilot exit status: 0
[2025-12-17 01:19:11] 2025-12-17 00:14:38,556 [wrapper] pandaids: 6930226580
[2025-12-17 01:19:11] 2025-12-17 00:14:38,746 [wrapper] cleanup supervisor_pilot  170406 4064287
[2025-12-17 01:19:11] 2025-12-17 00:14:38,750 [wrapper] Test setup, not cleaning
[2025-12-17 01:19:11] 2025-12-17 00:14:38,754 [wrapper] apfmon messages muted
[2025-12-17 01:19:11] 2025-12-17 00:14:38,758 [wrapper] ==== wrapper stdout END ====
[2025-12-17 01:19:11] 2025-12-17 00:14:38,763 [wrapper] ==== wrapper stderr END ====
[2025-12-17 01:19:11]  *** Error codes and diagnostics ***
[2025-12-17 01:19:11]     "exeErrorCode": 0,
[2025-12-17 01:19:11]     "exeErrorDiag": "",
[2025-12-17 01:19:11]     "pilotErrorCode": 0,
[2025-12-17 01:19:11]     "pilotErrorDiag": "",
[2025-12-17 01:19:11]  *** Listing of results directory ***
[2025-12-17 01:19:11] total 336968
[2025-12-17 01:19:11] -rw-r--r-- 1 boinc boinc    579449 Dec 16 00:23 pilot3.tar.gz
[2025-12-17 01:19:11] -rw-r--r-- 1 boinc boinc      5112 Dec 16 00:23 queuedata.json
[2025-12-17 01:19:11] -rwx------ 1 boinc boinc     36322 Dec 16 00:25 runpilot2-wrapper.sh
[2025-12-17 01:19:11] -rw-r--r-- 1 boinc boinc       100 Dec 16 22:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 01:19:11] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 22:22 run_atlas
[2025-12-17 01:19:11] -rw-r--r-- 1 boinc boinc       105 Dec 16 22:22 job.xml
[2025-12-17 01:19:11] -rw-r--r-- 1 boinc boinc      6691 Dec 16 22:23 init_data.xml
[2025-12-17 01:19:11] -rw-r--r-- 2 boinc boinc 193570900 Dec 16 22:23 EVNT.47886829._000410.pool.root.1
[2025-12-17 01:19:11] -rw-r--r-- 2 boinc boinc     15847 Dec 16 22:23 start_atlas.sh
[2025-12-17 01:19:11] drwxrwx--x 2 boinc boinc      4096 Dec 16 22:23 shared
[2025-12-17 01:19:11] -rw-r--r-- 2 boinc boinc    592410 Dec 16 22:23 input.tar.gz
[2025-12-17 01:19:11] -rw-r--r-- 1 boinc boinc         0 Dec 16 22:23 boinc_lockfile
[2025-12-17 01:19:11] -rw-r--r-- 1 boinc boinc      2539 Dec 16 22:23 pandaJob.out
[2025-12-17 01:19:11] -rw------- 1 boinc boinc    987401 Dec 16 22:23 agis_schedconf.cvmfs.json
[2025-12-17 01:19:11] -rw------- 1 boinc boinc   1516240 Dec 16 22:23 agis_ddmendpoints.agis.ALL.json
[2025-12-17 01:19:11] drwx------ 5 boinc boinc      4096 Dec 16 22:23 pilot3
[2025-12-17 01:19:11] -rw------- 1 boinc boinc 144002004 Dec 17 01:12 HITS.47886831._010400.pool.root.1
[2025-12-17 01:19:11] -rw-r--r-- 1 boinc boinc       528 Dec 17 01:12 boinc_task_state.xml
[2025-12-17 01:19:11] -rw------- 1 boinc boinc      1029 Dec 17 01:13 memory_monitor_summary.json
[2025-12-17 01:19:11] -rw------- 1 boinc boinc    357603 Dec 17 01:13 log.47886831._010400.job.log.tgz.1
[2025-12-17 01:19:11] -rw------- 1 boinc boinc      7790 Dec 17 01:13 heartbeat.json
[2025-12-17 01:19:11] -rw------- 1 boinc boinc        95 Dec 17 01:14 pilot_heartbeat.json
[2025-12-17 01:19:11] -rw------- 1 boinc boinc      5022 Dec 17 01:14 pilotlog.txt
[2025-12-17 01:19:11] -rw------- 1 boinc boinc   1426626 Dec 17 01:14 log.47886831._010400.job.log.1
[2025-12-17 01:19:11] -rw------- 1 boinc boinc       357 Dec 17 01:14 output.list
[2025-12-17 01:19:11] -rw-r--r-- 1 boinc boinc       620 Dec 17 01:14 runtime_log
[2025-12-17 01:19:11] -rw------- 1 boinc boinc   1802240 Dec 17 01:14 result.tar.gz
[2025-12-17 01:19:11] -rw-r--r-- 1 boinc boinc      9223 Dec 17 01:14 runtime_log.err
[2025-12-17 01:19:11] -rw------- 1 boinc boinc       665 Dec 17 01:14 asKKDmJ7Wp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjsYKDmWQfZUn.diag
[2025-12-17 01:19:11] -rw-r--r-- 1 boinc boinc        26 Dec 17 01:19 wrapper_checkpoint.txt
[2025-12-17 01:19:11] -rw-r--r-- 1 boinc boinc      8192 Dec 17 01:19 boinc_mmap_file
[2025-12-17 01:19:11] -rw-r--r-- 1 boinc boinc     21104 Dec 17 01:19 stderr.txt
[2025-12-17 01:19:11] HITS file was successfully produced:
[2025-12-17 01:19:11] -rw------- 1 boinc boinc 144002004 Dec 17 01:12 shared/HITS.pool.root.1
[2025-12-17 01:19:11]  *** Contents of shared directory: ***
[2025-12-17 01:19:11] total 332028
[2025-12-17 01:19:11] -rw-r--r-- 2 boinc boinc 193570900 Dec 16 22:23 ATLAS.root_0
[2025-12-17 01:19:11] -rw-r--r-- 2 boinc boinc     15847 Dec 16 22:23 start_atlas.sh
[2025-12-17 01:19:11] -rw-r--r-- 2 boinc boinc    592410 Dec 16 22:23 input.tar.gz
[2025-12-17 01:19:11] -rw------- 1 boinc boinc 144002004 Dec 17 01:12 HITS.pool.root.1
[2025-12-17 01:19:11] -rw------- 1 boinc boinc   1802240 Dec 17 01:14 result.tar.gz
01:19:12 (4057586): run_atlas exited; CPU time 39594.875183
01:19:12 (4057586): called boinc_finish(0)

</stderr_txt>
]]>

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