Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:45:49 (1201082): wrapper (7.7.26015): starting
00:45:49 (1201082): wrapper: running run_atlas (--nthreads 4)
[2025-12-17 00:45:49] Arguments: --nthreads 4
[2025-12-17 00:45:49] Threads: 4
[2025-12-17 00:45:49] Checking for CVMFS
[2025-12-17 00:45:49] No cvmfs_config command found, will try listing directly
[2025-12-17 00:45:49] CVMFS is ok
[2025-12-17 00:45:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-17 00:45:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-17 00:45:49] Further information can be found at the LHC@home message board.
[2025-12-17 00:45:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-17 00:45:49] Checking for apptainer binary...
[2025-12-17 00:45:49] which: no apptainer in ((null))
[2025-12-17 00:45:49] apptainer is not installed, using version from CVMFS
[2025-12-17 00:45:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-17 00:45:49] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut33.grid.cesnet.cz
[2025-12-17 00:45:49] apptainer works
[2025-12-17 00:45:49] Set ATHENA_PROC_NUMBER=4
[2025-12-17 00:45:49] Set ATHENA_CORE_NUMBER=4
[2025-12-17 00:45:49] Starting ATLAS job with PandaID=6929805980
[2025-12-17 00:45:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 06:32:42]  *** The last 200 lines of the pilot log: ***
[2025-12-17 06:32:42] 2025-12-17 05:18:39,609 | INFO     | time since job start (19960s) is within the limit (174528.0s)
[2025-12-17 06:32:42] 2025-12-17 05:18:39,628 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-17 06:32:42] 2025-12-17 05:18:40,584 | INFO     | monitor loop #1453: job 0:6929805980 is in state 'finished'
[2025-12-17 06:32:42] 2025-12-17 05:18:40,584 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 06:32:42] 2025-12-17 05:18:41,615 | INFO     | time since job start (19962s) is within the limit (174528.0s)
[2025-12-17 06:32:42] 2025-12-17 05:18:43,086 | INFO     | monitor loop #1454: job 0:6929805980 is in state 'finished'
[2025-12-17 06:32:42] 2025-12-17 05:18:43,087 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 06:32:42] 2025-12-17 05:18:43,494 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-17 06:32:42] 2025-12-17 05:18:43,502 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2573.585425000001
[2025-12-17 06:32:42] 2025-12-17 05:18:43,511 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6929805980/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 06:32:42] 2025-12-17 05:18:43,511 | INFO     | extracted standard info from prmon json
[2025-12-17 06:32:42] 2025-12-17 05:18:43,512 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 06:32:42] 2025-12-17 05:18:43,512 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 06:32:42] 2025-12-17 05:18:43,512 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 06:32:42] 2025-12-17 05:18:43,512 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 06:32:42] 2025-12-17 05:18:43,520 | INFO     | fitting pss+swap vs Time
[2025-12-17 06:32:42] 2025-12-17 05:18:43,520 | INFO     | sum of square deviations: 10842205148.0
[2025-12-17 06:32:42] 2025-12-17 05:18:43,524 | INFO     | sum of deviations: -26154646394.999992
[2025-12-17 06:32:42] 2025-12-17 05:18:43,524 | INFO     | mean x: 1765938728.0
[2025-12-17 06:32:42] 2025-12-17 05:18:43,524 | INFO     | mean y: 2364949.0366972475
[2025-12-17 06:32:42] 2025-12-17 05:18:43,524 | INFO     | intersect: 4262338114.6058826
[2025-12-17 06:32:42] 2025-12-17 05:18:43,525 | INFO     | chi2: 1.5588553791998694
[2025-12-17 06:32:42] 2025-12-17 05:18:43,525 | INFO     | sum of square deviations: 10352419220.5
[2025-12-17 06:32:42] 2025-12-17 05:18:43,529 | INFO     | sum of deviations: -25620147833.499992
[2025-12-17 06:32:42] 2025-12-17 05:18:43,529 | INFO     | mean x: 1765938575.5
[2025-12-17 06:32:42] 2025-12-17 05:18:43,529 | INFO     | mean y: 2365115.381987578
[2025-12-17 06:32:42] 2025-12-17 05:18:43,529 | INFO     | intersect: 4372706617.742942
[2025-12-17 06:32:42] 2025-12-17 05:18:43,530 | INFO     | chi2: 1.5581845689324674
[2025-12-17 06:32:42] 2025-12-17 05:18:43,530 | INFO     | current chi2=1.5581845689324674 (change=0.04303223226174612 %)
[2025-12-17 06:32:42] 2025-12-17 05:18:43,530 | INFO     | right removable region: 321
[2025-12-17 06:32:42] 2025-12-17 05:18:43,531 | INFO     | sum of square deviations: 10352419220.5
[2025-12-17 06:32:42] 2025-12-17 05:18:43,534 | INFO     | sum of deviations: -62774746809.99999
[2025-12-17 06:32:42] 2025-12-17 05:18:43,534 | INFO     | mean x: 1765938880.5
[2025-12-17 06:32:42] 2025-12-17 05:18:43,534 | INFO     | mean y: 2376239.267080745
[2025-12-17 06:32:42] 2025-12-17 05:18:43,534 | INFO     | intersect: 10710633289.542156
[2025-12-17 06:32:42] 2025-12-17 05:18:43,535 | INFO     | chi2: 0.30411899243229934
[2025-12-17 06:32:42] 2025-12-17 05:18:43,535 | INFO     | current chi2=0.30411899243229934 (change=80.49087833995236 %)
[2025-12-17 06:32:42] 2025-12-17 05:18:43,536 | INFO     | sum of square deviations: 9877610318.0
[2025-12-17 06:32:42] 2025-12-17 05:18:43,539 | INFO     | sum of deviations: -53797074005.99999
[2025-12-17 06:32:42] 2025-12-17 05:18:43,539 | INFO     | mean x: 1765939033.0
[2025-12-17 06:32:42] 2025-12-17 05:18:43,539 | INFO     | mean y: 2373347.6561514195
[2025-12-17 06:32:42] 2025-12-17 05:18:43,540 | INFO     | intersect: 9620322405.15865
[2025-12-17 06:32:42] 2025-12-17 05:18:43,540 | INFO     | chi2: 0.28791340534546034
[2025-12-17 06:32:42] 2025-12-17 05:18:43,540 | INFO     | current chi2=0.28791340534546034 (change=5.3286994532071414 %)
[2025-12-17 06:32:42] 2025-12-17 05:18:43,540 | INFO     | left removable region: 20
[2025-12-17 06:32:42] 2025-12-17 05:18:43,541 | INFO     | sum of square deviations: 8456158550.0
[2025-12-17 06:32:42] 2025-12-17 05:18:43,544 | INFO     | sum of deviations: -24384317388.000004
[2025-12-17 06:32:42] 2025-12-17 05:18:43,544 | INFO     | mean x: 1765939155.0
[2025-12-17 06:32:42] 2025-12-17 05:18:43,544 | INFO     | mean y: 2363791.6245847177
[2025-12-17 06:32:42] 2025-12-17 05:18:43,544 | INFO     | intersect: 5094654882.053174
[2025-12-17 06:32:42] 2025-12-17 05:18:43,545 | INFO     | chi2: 0.171675724137327
[2025-12-17 06:32:42] 2025-12-17 05:18:43,545 | INFO     | current memory leak: -2.88 B/s (using 301 data points, chi2=0.17)
[2025-12-17 06:32:42] 2025-12-17 05:18:43,546 | INFO     | could have reported an average CPU frequency of 2530 MHz (15 samples)
[2025-12-17 06:32:42] 2025-12-17 05:18:43,546 | INFO     | ..............................
[2025-12-17 06:32:42] 2025-12-17 05:18:43,546 | INFO     | . Timing measurements:
[2025-12-17 06:32:42] 2025-12-17 05:18:43,547 | INFO     | . get job = 0 s
[2025-12-17 06:32:42] 2025-12-17 05:18:43,547 | INFO     | . initial setup = 1 s
[2025-12-17 06:32:42] 2025-12-17 05:18:43,547 | INFO     | . payload setup = 5 s
[2025-12-17 06:32:42] 2025-12-17 05:18:43,547 | INFO     | . stage-in = 0 s
[2025-12-17 06:32:42] 2025-12-17 05:18:43,547 | INFO     | . payload execution = 19930 s
[2025-12-17 06:32:42] 2025-12-17 05:18:43,547 | INFO     | . stage-out = 1 s
[2025-12-17 06:32:42] 2025-12-17 05:18:43,547 | INFO     | . log creation = 0 s
[2025-12-17 06:32:42] 2025-12-17 05:18:43,547 | INFO     | ..............................
[2025-12-17 06:32:42] 2025-12-17 05:18:43,636 | INFO     | time since job start (19964s) is within the limit (174528.0s)
[2025-12-17 06:32:42] 2025-12-17 05:18:43,666 | INFO     | 
[2025-12-17 06:32:42] 2025-12-17 05:18:43,666 | INFO     | job summary report
[2025-12-17 06:32:42] 2025-12-17 05:18:43,666 | INFO     | --------------------------------------------------
[2025-12-17 06:32:42] 2025-12-17 05:18:43,667 | INFO     | PanDA job id: 6929805980
[2025-12-17 06:32:42] 2025-12-17 05:18:43,667 | INFO     | task id: 47905907
[2025-12-17 06:32:42] 2025-12-17 05:18:43,667 | INFO     | errors: (none)
[2025-12-17 06:32:42] 2025-12-17 05:18:43,667 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 06:32:42] 2025-12-17 05:18:43,667 | INFO     | pilot state: finished 
[2025-12-17 06:32:42] 2025-12-17 05:18:43,667 | INFO     | transexitcode: 0
[2025-12-17 06:32:42] 2025-12-17 05:18:43,667 | INFO     | exeerrorcode: 0
[2025-12-17 06:32:42] 2025-12-17 05:18:43,667 | INFO     | exeerrordiag: 
[2025-12-17 06:32:42] 2025-12-17 05:18:43,668 | INFO     | exitcode: 0
[2025-12-17 06:32:42] 2025-12-17 05:18:43,668 | INFO     | exitmsg: OK
[2025-12-17 06:32:42] 2025-12-17 05:18:43,668 | INFO     | cpuconsumptiontime: 77017 s
[2025-12-17 06:32:42] 2025-12-17 05:18:43,668 | INFO     | nevents: 400
[2025-12-17 06:32:42] 2025-12-17 05:18:43,668 | INFO     | neventsw: 0
[2025-12-17 06:32:42] 2025-12-17 05:18:43,668 | INFO     | pid: 1211531
[2025-12-17 06:32:42] 2025-12-17 05:18:43,668 | INFO     | pgrp: 1211531
[2025-12-17 06:32:42] 2025-12-17 05:18:43,668 | INFO     | corecount: 4
[2025-12-17 06:32:42] 2025-12-17 05:18:43,669 | INFO     | event service: False
[2025-12-17 06:32:42] 2025-12-17 05:18:43,669 | INFO     | sizes: {0: 2283920, 4: 2284182, 11: 2284210, 19940: 2317545, 19941: 2326565, 19942: 2326621, 19949: 2326943}
[2025-12-17 06:32:42] 2025-12-17 05:18:43,669 | INFO     | --------------------------------------------------
[2025-12-17 06:32:42] 2025-12-17 05:18:43,669 | INFO     | 
[2025-12-17 06:32:42] 2025-12-17 05:18:43,669 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2025-12-17 06:32:42] 2025-12-17 05:18:43,692 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 06:32:42] 2025-12-17 05:18:43,692 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 06:32:42] 2025-12-17 05:18:43,692 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 06:32:42] 2025-12-17 05:18:43,692 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 06:32:42] 2025-12-17 05:18:43,693 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 06:32:42] 2025-12-17 05:18:43,693 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 06:32:42] 2025-12-17 05:18:43,693 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 06:32:42] 2025-12-17 05:18:43,693 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 06:32:42] 2025-12-17 05:18:43,693 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 06:32:42] 2025-12-17 05:18:43,693 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 06:32:42] 2025-12-17 05:18:43,694 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 06:32:42] 2025-12-17 05:18:43,694 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 06:32:42] 2025-12-17 05:18:43,694 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 06:32:42] 2025-12-17 05:18:43,694 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 06:32:42] 2025-12-17 05:18:43,694 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 06:32:42] 2025-12-17 05:18:43,694 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 06:32:42] 2025-12-17 05:18:43,694 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 06:32:42] 2025-12-17 05:18:43,695 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 06:32:42] 2025-12-17 05:18:43,695 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 06:32:42] 2025-12-17 05:18:43,695 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 06:32:42] 2025-12-17 05:18:43,695 | INFO     | job 6929805980 has completed (purged errors)
[2025-12-17 06:32:42] 2025-12-17 05:18:43,695 | INFO     | overall cleanup function is called
[2025-12-17 06:32:42] 2025-12-17 05:18:44,703 | INFO     | --- collectZombieJob: --- 10, [1211531]
[2025-12-17 06:32:42] 2025-12-17 05:18:44,704 | INFO     | zombie collector waiting for pid 1211531
[2025-12-17 06:32:42] 2025-12-17 05:18:44,704 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 06:32:42] 2025-12-17 05:18:44,704 | INFO     | collected zombie processes
[2025-12-17 06:32:42] 2025-12-17 05:18:44,704 | INFO     | will attempt to kill all subprocesses of pid=1211531
[2025-12-17 06:32:42] 2025-12-17 05:18:45,095 | INFO     | process IDs to be killed: [1211531] (in reverse order)
[2025-12-17 06:32:42] 2025-12-17 05:18:45,194 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 06:32:42] 2025-12-17 05:18:45,194 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 06:32:42] 2025-12-17 05:18:45,205 | INFO     | did not find any defunct processes belonging to 1211531
[2025-12-17 06:32:42] 2025-12-17 05:18:45,217 | INFO     | did not find any defunct processes belonging to 1211531
[2025-12-17 06:32:42] 2025-12-17 05:18:45,217 | INFO     | ready for new job
[2025-12-17 06:32:42] 2025-12-17 05:18:45,217 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 06:32:42] 2025-12-17 05:18:45,220 | INFO     | ***************************************
[2025-12-17 06:32:42] 2025-12-17 05:18:45,220 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 06:32:42] 2025-12-17 05:18:45,221 | INFO     | ***************************************
[2025-12-17 06:32:42] 2025-12-17 05:18:45,221 | INFO     | 
[2025-12-17 06:32:42] 2025-12-17 05:18:45,224 | INFO     | architecture information:
[2025-12-17 06:32:42] 2025-12-17 05:18:45,224 | INFO     | executing command: cat /etc/os-release
[2025-12-17 06:32:42] 2025-12-17 05:18:45,239 | INFO     | cat /etc/os-release:
[2025-12-17 06:32:42] NAME="CentOS Linux"
[2025-12-17 06:32:42] VERSION="7 (Core)"
[2025-12-17 06:32:42] ID="centos"
[2025-12-17 06:32:42] ID_LIKE="rhel fedora"
[2025-12-17 06:32:42] VERSION_ID="7"
[2025-12-17 06:32:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 06:32:42] ANSI_COLOR="0;31"
[2025-12-17 06:32:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 06:32:42] HOME_URL="https://www.centos.org/"
[2025-12-17 06:32:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 06:32:42] 
[2025-12-17 06:32:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 06:32:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 06:32:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 06:32:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 06:32:42] 
[2025-12-17 06:32:42] 2025-12-17 05:18:45,240 | INFO     | ***************************************
[2025-12-17 06:32:42] 2025-12-17 05:18:45,743 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2025-12-17 06:32:42] 2025-12-17 05:18:45,760 | INFO     | sufficient remaining disk space (1673351135232 B)
[2025-12-17 06:32:42] 2025-12-17 05:18:45,760 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 06:32:42] 2025-12-17 05:18:45,760 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 06:32:42] 2025-12-17 05:18:45,761 | INFO     | update_server=False
[2025-12-17 06:32:42] 2025-12-17 05:18:45,761 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 06:32:42] 2025-12-17 05:18:46,386 | INFO     | all data control threads have been joined
[2025-12-17 06:32:42] 2025-12-17 05:18:46,440 | INFO     | all payload control threads have been joined
[2025-12-17 06:32:42] 2025-12-17 05:18:46,594 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 06:32:42] 2025-12-17 05:18:46,594 | INFO     | aborting loop
[2025-12-17 06:32:43] 2025-12-17 05:18:46,766 | INFO     | [job] retrieve thread has finished
[2025-12-17 06:32:43] 2025-12-17 05:18:46,847 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 06:32:43] 2025-12-17 05:18:47,125 | INFO     | [data] copytool_in thread has finished
[2025-12-17 06:32:43] 2025-12-17 05:18:47,207 | INFO     | [payload] validate_post thread has finished
[2025-12-17 06:32:43] 2025-12-17 05:18:47,262 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 06:32:43] 2025-12-17 05:18:47,344 | INFO     | [job] validate thread has finished
[2025-12-17 06:32:43] 2025-12-17 05:18:47,382 | INFO     | [payload] failed_post thread has finished
[2025-12-17 06:32:43] 2025-12-17 05:18:47,392 | INFO     | [data] control thread has finished
[2025-12-17 06:32:43] 2025-12-17 05:18:47,446 | INFO     | [payload] control thread has finished
[2025-12-17 06:32:43] 2025-12-17 05:18:47,456 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 06:32:43] 2025-12-17 05:18:47,465 | INFO     | all job control threads have been joined
[2025-12-17 06:32:43] 2025-12-17 05:18:47,600 | INFO     | [job] job monitor thread has finished
[2025-12-17 06:32:43] 2025-12-17 05:18:47,652 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 06:32:43] 2025-12-17 05:18:47,781 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 06:32:43] 2025-12-17 05:18:48,470 | INFO     | [job] control thread has finished
[2025-12-17 06:32:43] 2025-12-17 05:18:48,675 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 06:32:43] 2025-12-17 05:18:48,853 | INFO     | [data] copytool_out thread has finished
[2025-12-17 06:32:43] 2025-12-17 05:18:49,680 | INFO     | [job] queue monitor thread has finished
[2025-12-17 06:32:43] 2025-12-17 05:18:51,460 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 06:32:43] 2025-12-17 05:18:56,813 | INFO     | job.realtimelogging is not enabled
[2025-12-17 06:32:43] 2025-12-17 05:18:57,818 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 06:32:43] 2025-12-17 05:19:17,169 | INFO     | PID=1204763 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 06:32:43] 2025-12-17 05:19:17,170 | INFO     | .. there are 3 such processes running
[2025-12-17 06:32:43] 2025-12-17 05:19:17,170 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 06:32:43] 2025-12-17 05:19:17,170 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 06:32:43] 2025-12-17 05:19:17,170 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 06:32:43] 2025-12-17 05:19:31,969 | INFO     | [monitor] cgroup control has ended
[2025-12-17 06:32:43] 2025-12-17 05:19:33,670 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22787820885824)>', '<ExcThread(monitor, started 22787575990016)>']
[2025-12-17 06:32:43] 2025-12-17 05:19:34,255 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 06:32:43] 2025-12-17 05:19:34,255 | INFO     | [monitor] control thread has ended
[2025-12-17 06:32:43] 2025-12-17 05:19:38,694 | INFO     | all workflow threads have been joined
[2025-12-17 06:32:43] 2025-12-17 05:19:38,695 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 06:32:43] 2025-12-17 05:19:38,695 | INFO     | traces error code: 0
[2025-12-17 06:32:43] 2025-12-17 05:19:38,695 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 06:32:43] 2025-12-17 05:19:38,809 [wrapper] ==== pilot stdout END ====
[2025-12-17 06:32:43] 2025-12-17 05:19:38,812 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 06:32:43] 2025-12-17 05:19:38,814 [wrapper] pilotpid: 1204763
[2025-12-17 06:32:43] 2025-12-17 05:19:38,816 [wrapper] Pilot exit status: 0
[2025-12-17 06:32:43] 2025-12-17 05:19:38,825 [wrapper] pandaids: 6929805980
[2025-12-17 06:32:43] 2025-12-17 05:19:38,879 [wrapper] cleanup supervisor_pilot 1443122 1204764
[2025-12-17 06:32:43] 2025-12-17 05:19:38,881 [wrapper] Test setup, not cleaning
[2025-12-17 06:32:43] 2025-12-17 05:19:38,884 [wrapper] apfmon messages muted
[2025-12-17 06:32:43] 2025-12-17 05:19:38,886 [wrapper] ==== wrapper stdout END ====
[2025-12-17 06:32:43] 2025-12-17 05:19:38,889 [wrapper] ==== wrapper stderr END ====
[2025-12-17 06:32:43]  *** Error codes and diagnostics ***
[2025-12-17 06:32:43]     "exeErrorCode": 0,
[2025-12-17 06:32:43]     "exeErrorDiag": "",
[2025-12-17 06:32:43]     "pilotErrorCode": 0,
[2025-12-17 06:32:43]     "pilotErrorDiag": "",
[2025-12-17 06:32:43]  *** Listing of results directory ***
[2025-12-17 06:32:43] total 414448
[2025-12-17 06:32:43] -rwx------ 1 boinc boinc     36322 Dec 15 16:56 runpilot2-wrapper.sh
[2025-12-17 06:32:43] -rw-r--r-- 1 boinc boinc      5112 Dec 15 16:57 queuedata.json
[2025-12-17 06:32:43] -rw-r--r-- 1 boinc boinc    579449 Dec 15 16:57 pilot3.tar.gz
[2025-12-17 06:32:43] -rw-r--r-- 1 boinc boinc       100 Dec 17 00:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 06:32:43] -rwxr-xr-x 1 boinc boinc      7986 Dec 17 00:45 run_atlas
[2025-12-17 06:32:43] -rw-r--r-- 1 boinc boinc       105 Dec 17 00:45 job.xml
[2025-12-17 06:32:43] -rw-r--r-- 1 boinc boinc      6425 Dec 17 00:45 init_data.xml
[2025-12-17 06:32:43] -rw-r--r-- 2 boinc boinc 202925849 Dec 17 00:45 EVNT.47905905._000027.pool.root.1
[2025-12-17 06:32:43] -rw-r--r-- 2 boinc boinc     15847 Dec 17 00:45 start_atlas.sh
[2025-12-17 06:32:43] drwxrwx--x 2 boinc boinc      4096 Dec 17 00:45 shared
[2025-12-17 06:32:43] -rw-r--r-- 2 boinc boinc    592384 Dec 17 00:45 input.tar.gz
[2025-12-17 06:32:43] -rw-r--r-- 1 boinc boinc         0 Dec 17 00:45 boinc_lockfile
[2025-12-17 06:32:43] -rw-r--r-- 1 boinc boinc      2476 Dec 17 00:45 pandaJob.out
[2025-12-17 06:32:43] -rw------- 1 boinc boinc    987401 Dec 17 00:45 agis_schedconf.cvmfs.json
[2025-12-17 06:32:43] drwx------ 5 boinc boinc      4096 Dec 17 00:45 pilot3
[2025-12-17 06:32:43] -rw------- 1 boinc boinc 210943265 Dec 17 06:17 HITS.47905907._000593.pool.root.1
[2025-12-17 06:32:43] -rw-r--r-- 1 boinc boinc       528 Dec 17 06:17 boinc_task_state.xml
[2025-12-17 06:32:43] -rw------- 1 boinc boinc      1038 Dec 17 06:18 memory_monitor_summary.json
[2025-12-17 06:32:43] -rw------- 1 boinc boinc        95 Dec 17 06:18 pilot_heartbeat.json
[2025-12-17 06:32:43] -rw------- 1 boinc boinc   1516240 Dec 17 06:18 agis_ddmendpoints.agis.ALL.json
[2025-12-17 06:32:43] -rw------- 1 boinc boinc    491183 Dec 17 06:18 log.47905907._000593.job.log.tgz.1
[2025-12-17 06:32:43] -rw------- 1 boinc boinc      7825 Dec 17 06:18 heartbeat.json
[2025-12-17 06:32:43] -rw------- 1 boinc boinc      4906 Dec 17 06:19 pilotlog.txt
[2025-12-17 06:32:43] -rw------- 1 boinc boinc   2817945 Dec 17 06:19 log.47905907._000593.job.log.1
[2025-12-17 06:32:43] -rw------- 1 boinc boinc       357 Dec 17 06:19 output.list
[2025-12-17 06:32:43] -rw-r--r-- 1 boinc boinc       620 Dec 17 06:19 runtime_log
[2025-12-17 06:32:43] -rw------- 1 boinc boinc   3328000 Dec 17 06:19 result.tar.gz
[2025-12-17 06:32:43] -rw------- 1 boinc boinc       666 Dec 17 06:19 sWZLDmi6Pp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqNYKDmWzUORn.diag
[2025-12-17 06:32:43] -rw-r--r-- 1 boinc boinc      9206 Dec 17 06:19 runtime_log.err
[2025-12-17 06:32:43] -rw-r--r-- 1 boinc boinc        27 Dec 17 06:32 wrapper_checkpoint.txt
[2025-12-17 06:32:43] -rw-r--r-- 1 boinc boinc      8192 Dec 17 06:32 boinc_mmap_file
[2025-12-17 06:32:43] -rw-r--r-- 1 boinc boinc     21198 Dec 17 06:32 stderr.txt
[2025-12-17 06:32:43] HITS file was successfully produced:
[2025-12-17 06:32:43] -rw------- 1 boinc boinc 210943265 Dec 17 06:17 shared/HITS.pool.root.1
[2025-12-17 06:32:43]  *** Contents of shared directory: ***
[2025-12-17 06:32:43] total 408024
[2025-12-17 06:32:43] -rw-r--r-- 2 boinc boinc 202925849 Dec 17 00:45 ATLAS.root_0
[2025-12-17 06:32:43] -rw-r--r-- 2 boinc boinc     15847 Dec 17 00:45 start_atlas.sh
[2025-12-17 06:32:43] -rw-r--r-- 2 boinc boinc    592384 Dec 17 00:45 input.tar.gz
[2025-12-17 06:32:43] -rw------- 1 boinc boinc 210943265 Dec 17 06:17 HITS.pool.root.1
[2025-12-17 06:32:43] -rw------- 1 boinc boinc   3328000 Dec 17 06:19 result.tar.gz
06:32:44 (1201082): run_atlas exited; CPU time 77769.431830
06:32:44 (1201082): called boinc_finish(0)

</stderr_txt>
]]>

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