Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:32:45 (490142): wrapper (7.7.26015): starting
09:32:45 (490142): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 09:32:45] Arguments: --nthreads 4
[2025-12-16 09:32:45] Threads: 4
[2025-12-16 09:32:45] Checking for CVMFS
[2025-12-16 09:32:45] No cvmfs_config command found, will try listing directly
[2025-12-16 09:32:46] CVMFS is ok
[2025-12-16 09:32:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 09:32:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 09:32:46] Further information can be found at the LHC@home message board.
[2025-12-16 09:32:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 09:32:46] Checking for apptainer binary...
[2025-12-16 09:32:46] which: no apptainer in ((null))
[2025-12-16 09:32:46] apptainer is not installed, using version from CVMFS
[2025-12-16 09:32:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 09:32:46] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut33.grid.cesnet.cz
[2025-12-16 09:32:46] apptainer works
[2025-12-16 09:32:46] Set ATHENA_PROC_NUMBER=4
[2025-12-16 09:32:46] Set ATHENA_CORE_NUMBER=4
[2025-12-16 09:32:46] Starting ATLAS job with PandaID=6929807415
[2025-12-16 09:32:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 15:17:54]  *** The last 200 lines of the pilot log: ***
[2025-12-16 15:17:54] 2025-12-16 14:11:49,279 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2025-12-16 15:17:54] 2025-12-16 14:11:49,281 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6929807415/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 15:17:54] 2025-12-16 14:11:49,282 | INFO     | extracted standard info from prmon json
[2025-12-16 15:17:54] 2025-12-16 14:11:49,282 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 15:17:54] 2025-12-16 14:11:49,282 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 15:17:54] 2025-12-16 14:11:49,283 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 15:17:54] 2025-12-16 14:11:49,283 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 15:17:54] 2025-12-16 14:11:49,289 | INFO     | fitting pss+swap vs Time
[2025-12-16 15:17:54] 2025-12-16 14:11:49,290 | INFO     | sum of square deviations: 11450045382.0
[2025-12-16 15:17:54] 2025-12-16 14:11:49,292 | INFO     | sum of deviations: -82288828041.0
[2025-12-16 15:17:54] 2025-12-16 14:11:49,293 | INFO     | mean x: 1765884130.0
[2025-12-16 15:17:54] 2025-12-16 14:11:49,293 | INFO     | mean y: 2379071.2942942944
[2025-12-16 15:17:54] 2025-12-16 14:11:49,293 | INFO     | intersect: 12693379907.18084
[2025-12-16 15:17:54] 2025-12-16 14:11:49,293 | INFO     | chi2: 1.852879153501885
[2025-12-16 15:17:54] 2025-12-16 14:11:49,294 | INFO     | sum of square deviations: 10941980042.0
[2025-12-16 15:17:54] 2025-12-16 14:11:49,297 | INFO     | sum of deviations: -81069372923.5
[2025-12-16 15:17:54] 2025-12-16 14:11:49,297 | INFO     | mean x: 1765883977.5
[2025-12-16 15:17:54] 2025-12-16 14:11:49,297 | INFO     | mean y: 2379437.350609756
[2025-12-16 15:17:54] 2025-12-16 14:11:49,297 | INFO     | intersect: 13085853009.964989
[2025-12-16 15:17:54] 2025-12-16 14:11:49,298 | INFO     | chi2: 1.8487842528181468
[2025-12-16 15:17:54] 2025-12-16 14:11:49,298 | INFO     | current chi2=1.8487842528181468 (change=0.2210020376125902 %)
[2025-12-16 15:17:54] 2025-12-16 14:11:49,298 | INFO     | right removable region: 327
[2025-12-16 15:17:54] 2025-12-16 14:11:49,298 | INFO     | sum of square deviations: 10941980042.0
[2025-12-16 15:17:54] 2025-12-16 14:11:49,301 | INFO     | sum of deviations: -118795767142.50005
[2025-12-16 15:17:54] 2025-12-16 14:11:49,301 | INFO     | mean x: 1765884282.5
[2025-12-16 15:17:54] 2025-12-16 14:11:49,302 | INFO     | mean y: 2389917.0701219514
[2025-12-16 15:17:54] 2025-12-16 14:11:49,302 | INFO     | intersect: 19174384128.286648
[2025-12-16 15:17:54] 2025-12-16 14:11:49,302 | INFO     | chi2: 0.5680079438244294
[2025-12-16 15:17:54] 2025-12-16 14:11:49,302 | INFO     | current chi2=0.5680079438244294 (change=69.34457691151029 %)
[2025-12-16 15:17:54] 2025-12-16 14:11:49,303 | INFO     | sum of square deviations: 10449170802.0
[2025-12-16 15:17:54] 2025-12-16 14:11:49,306 | INFO     | sum of deviations: -107042723688.99998
[2025-12-16 15:17:54] 2025-12-16 14:11:49,306 | INFO     | mean x: 1765884435.0
[2025-12-16 15:17:54] 2025-12-16 14:11:49,306 | INFO     | mean y: 2386272.59752322
[2025-12-16 15:17:54] 2025-12-16 14:11:49,306 | INFO     | intersect: 18092346062.156227
[2025-12-16 15:17:54] 2025-12-16 14:11:49,306 | INFO     | chi2: 0.552495092584719
[2025-12-16 15:17:54] 2025-12-16 14:11:49,307 | INFO     | current chi2=0.552495092584719 (change=2.7310975855833224 %)
[2025-12-16 15:17:54] 2025-12-16 14:11:49,307 | INFO     | left removable region: 20
[2025-12-16 15:17:54] 2025-12-16 14:11:49,307 | INFO     | sum of square deviations: 8971993338.0
[2025-12-16 15:17:54] 2025-12-16 14:11:49,310 | INFO     | sum of deviations: -72190762503.0
[2025-12-16 15:17:54] 2025-12-16 14:11:49,310 | INFO     | mean x: 1765884557.0
[2025-12-16 15:17:54] 2025-12-16 14:11:49,310 | INFO     | mean y: 2375737.4397394136
[2025-12-16 15:17:54] 2025-12-16 14:11:49,310 | INFO     | intersect: 14211097017.043343
[2025-12-16 15:17:54] 2025-12-16 14:11:49,310 | INFO     | chi2: 0.44497511936243256
[2025-12-16 15:17:54] 2025-12-16 14:11:49,311 | INFO     | current memory leak: -8.05 B/s (using 307 data points, chi2=0.44)
[2025-12-16 15:17:54] 2025-12-16 14:11:49,311 | INFO     | could have reported an average CPU frequency of 2554 MHz (15 samples)
[2025-12-16 15:17:54] 2025-12-16 14:11:49,312 | INFO     | ..............................
[2025-12-16 15:17:54] 2025-12-16 14:11:49,312 | INFO     | . Timing measurements:
[2025-12-16 15:17:54] 2025-12-16 14:11:49,312 | INFO     | . get job = 0 s
[2025-12-16 15:17:54] 2025-12-16 14:11:49,312 | INFO     | . initial setup = 1 s
[2025-12-16 15:17:54] 2025-12-16 14:11:49,312 | INFO     | . payload setup = 5 s
[2025-12-16 15:17:54] 2025-12-16 14:11:49,312 | INFO     | . stage-in = 0 s
[2025-12-16 15:17:54] 2025-12-16 14:11:49,312 | INFO     | . payload execution = 20296 s
[2025-12-16 15:17:54] 2025-12-16 14:11:49,313 | INFO     | . stage-out = 1 s
[2025-12-16 15:17:54] 2025-12-16 14:11:49,313 | INFO     | . log creation = 0 s
[2025-12-16 15:17:54] 2025-12-16 14:11:49,313 | INFO     | ..............................
[2025-12-16 15:17:54] 2025-12-16 14:11:49,313 | INFO     | size of work directory /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6929807415: 2317179 B (within 2768240640 B limit)
[2025-12-16 15:17:54] 2025-12-16 14:11:49,314 | INFO     | pfn file=/scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6929807415/HITS.47898826._001951.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-16 15:17:54] 2025-12-16 14:11:49,314 | INFO     | total size of present files: 0 B (workdir size: 2317179 B)
[2025-12-16 15:17:54] 2025-12-16 14:11:49,319 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6929807415/HITS.47898826._001951.pool.root.1 since it does not exist
[2025-12-16 15:17:54] 2025-12-16 14:11:49,716 | INFO     | number of running child processes to parent process 502733: 1
[2025-12-16 15:17:54] 2025-12-16 14:11:49,716 | INFO     | maximum number of monitored processes: 6
[2025-12-16 15:17:54] 2025-12-16 14:11:49,716 | INFO     | aborting job monitoring since job object (job id=6929807415) has expired
[2025-12-16 15:17:54] 2025-12-16 14:11:49,730 | INFO     | 
[2025-12-16 15:17:54] 2025-12-16 14:11:49,731 | INFO     | job summary report
[2025-12-16 15:17:54] 2025-12-16 14:11:49,731 | INFO     | --------------------------------------------------
[2025-12-16 15:17:54] 2025-12-16 14:11:49,731 | INFO     | PanDA job id: 6929807415
[2025-12-16 15:17:54] 2025-12-16 14:11:49,731 | INFO     | task id: 47898826
[2025-12-16 15:17:54] 2025-12-16 14:11:49,731 | INFO     | errors: (none)
[2025-12-16 15:17:54] 2025-12-16 14:11:49,731 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 15:17:54] 2025-12-16 14:11:49,731 | INFO     | pilot state: finished 
[2025-12-16 15:17:54] 2025-12-16 14:11:49,731 | INFO     | transexitcode: 0
[2025-12-16 15:17:54] 2025-12-16 14:11:49,731 | INFO     | exeerrorcode: 0
[2025-12-16 15:17:54] 2025-12-16 14:11:49,731 | INFO     | exeerrordiag: 
[2025-12-16 15:17:54] 2025-12-16 14:11:49,731 | INFO     | exitcode: 0
[2025-12-16 15:17:54] 2025-12-16 14:11:49,731 | INFO     | exitmsg: OK
[2025-12-16 15:17:54] 2025-12-16 14:11:49,731 | INFO     | cpuconsumptiontime: 77772 s
[2025-12-16 15:17:54] 2025-12-16 14:11:49,731 | INFO     | nevents: 400
[2025-12-16 15:17:54] 2025-12-16 14:11:49,732 | INFO     | neventsw: 0
[2025-12-16 15:17:54] 2025-12-16 14:11:49,732 | INFO     | pid: 502733
[2025-12-16 15:17:54] 2025-12-16 14:11:49,732 | INFO     | pgrp: 502733
[2025-12-16 15:17:54] 2025-12-16 14:11:49,732 | INFO     | corecount: 4
[2025-12-16 15:17:54] 2025-12-16 14:11:49,732 | INFO     | event service: False
[2025-12-16 15:17:54] 2025-12-16 14:11:49,732 | INFO     | sizes: {0: 2283965, 4: 2284227, 11: 2284255, 20306: 2317678, 20308: 2326698, 20309: 2326754, 20315: 2327104}
[2025-12-16 15:17:54] 2025-12-16 14:11:49,732 | INFO     | --------------------------------------------------
[2025-12-16 15:17:54] 2025-12-16 14:11:49,732 | INFO     | 
[2025-12-16 15:17:54] 2025-12-16 14:11:49,732 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2025-12-16 15:17:54] 2025-12-16 14:11:49,751 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 15:17:54] 2025-12-16 14:11:49,751 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 15:17:54] 2025-12-16 14:11:49,752 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 15:17:54] 2025-12-16 14:11:49,752 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 15:17:54] 2025-12-16 14:11:49,752 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 15:17:54] 2025-12-16 14:11:49,752 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 15:17:54] 2025-12-16 14:11:49,752 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 15:17:54] 2025-12-16 14:11:49,752 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 15:17:54] 2025-12-16 14:11:49,752 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 15:17:54] 2025-12-16 14:11:49,753 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 15:17:54] 2025-12-16 14:11:49,753 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 15:17:54] 2025-12-16 14:11:49,753 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 15:17:54] 2025-12-16 14:11:49,753 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 15:17:54] 2025-12-16 14:11:49,753 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 15:17:54] 2025-12-16 14:11:49,753 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 15:17:54] 2025-12-16 14:11:49,753 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 15:17:54] 2025-12-16 14:11:49,754 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 15:17:54] 2025-12-16 14:11:49,754 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 15:17:54] 2025-12-16 14:11:49,754 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 15:17:54] 2025-12-16 14:11:49,754 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 15:17:54] 2025-12-16 14:11:49,754 | INFO     | job 6929807415 has completed (purged errors)
[2025-12-16 15:17:54] 2025-12-16 14:11:49,755 | INFO     | overall cleanup function is called
[2025-12-16 15:17:54] 2025-12-16 14:11:50,762 | INFO     | --- collectZombieJob: --- 10, [502733]
[2025-12-16 15:17:54] 2025-12-16 14:11:50,763 | INFO     | zombie collector waiting for pid 502733
[2025-12-16 15:17:54] 2025-12-16 14:11:50,763 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 15:17:54] 2025-12-16 14:11:50,763 | INFO     | collected zombie processes
[2025-12-16 15:17:54] 2025-12-16 14:11:50,763 | INFO     | will attempt to kill all subprocesses of pid=502733
[2025-12-16 15:17:54] 2025-12-16 14:11:51,110 | INFO     | process IDs to be killed: [502733] (in reverse order)
[2025-12-16 15:17:54] 2025-12-16 14:11:51,199 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 15:17:54] 2025-12-16 14:11:51,199 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 15:17:54] 2025-12-16 14:11:51,209 | INFO     | did not find any defunct processes belonging to 502733
[2025-12-16 15:17:54] 2025-12-16 14:11:51,218 | INFO     | did not find any defunct processes belonging to 502733
[2025-12-16 15:17:54] 2025-12-16 14:11:51,218 | INFO     | ready for new job
[2025-12-16 15:17:54] 2025-12-16 14:11:51,218 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 15:17:54] 2025-12-16 14:11:51,221 | INFO     | ***************************************
[2025-12-16 15:17:54] 2025-12-16 14:11:51,221 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 15:17:54] 2025-12-16 14:11:51,221 | INFO     | ***************************************
[2025-12-16 15:17:54] 2025-12-16 14:11:51,221 | INFO     | 
[2025-12-16 15:17:54] 2025-12-16 14:11:51,223 | INFO     | architecture information:
[2025-12-16 15:17:54] 2025-12-16 14:11:51,224 | INFO     | executing command: cat /etc/os-release
[2025-12-16 15:17:54] 2025-12-16 14:11:51,238 | INFO     | cat /etc/os-release:
[2025-12-16 15:17:54] NAME="CentOS Linux"
[2025-12-16 15:17:54] VERSION="7 (Core)"
[2025-12-16 15:17:54] ID="centos"
[2025-12-16 15:17:54] ID_LIKE="rhel fedora"
[2025-12-16 15:17:54] VERSION_ID="7"
[2025-12-16 15:17:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 15:17:54] ANSI_COLOR="0;31"
[2025-12-16 15:17:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 15:17:54] HOME_URL="https://www.centos.org/"
[2025-12-16 15:17:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 15:17:54] 
[2025-12-16 15:17:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 15:17:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 15:17:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 15:17:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 15:17:54] 
[2025-12-16 15:17:54] 2025-12-16 14:11:51,238 | INFO     | ***************************************
[2025-12-16 15:17:54] 2025-12-16 14:11:51,741 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2025-12-16 15:17:54] 2025-12-16 14:11:51,758 | INFO     | sufficient remaining disk space (1665552875520 B)
[2025-12-16 15:17:54] 2025-12-16 14:11:51,758 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 15:17:54] 2025-12-16 14:11:51,758 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 15:17:54] 2025-12-16 14:11:51,759 | INFO     | update_server=False
[2025-12-16 15:17:54] 2025-12-16 14:11:51,759 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 15:17:54] 2025-12-16 14:11:52,192 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 15:17:54] 2025-12-16 14:11:52,218 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-16 15:17:54] 2025-12-16 14:11:52,219 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-16 15:17:54] 2025-12-16 14:11:52,219 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 15:17:54] 2025-12-16 14:11:52,219 | INFO     | will abort loop
[2025-12-16 15:17:54] 2025-12-16 14:11:52,258 | INFO     | all job control threads have been joined
[2025-12-16 15:17:54] 2025-12-16 14:11:52,261 | INFO     | all data control threads have been joined
[2025-12-16 15:17:54] 2025-12-16 14:11:52,423 | INFO     | all payload control threads have been joined
[2025-12-16 15:17:54] 2025-12-16 14:11:52,764 | INFO     | [job] retrieve thread has finished
[2025-12-16 15:17:54] 2025-12-16 14:11:53,128 | INFO     | [payload] failed_post thread has finished
[2025-12-16 15:17:54] 2025-12-16 14:11:53,200 | INFO     | [data] copytool_in thread has finished
[2025-12-16 15:17:54] 2025-12-16 14:11:53,205 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 15:17:54] 2025-12-16 14:11:53,224 | INFO     | [job] job monitor thread has finished
[2025-12-16 15:17:54] 2025-12-16 14:11:53,264 | INFO     | [job] control thread has finished
[2025-12-16 15:17:54] 2025-12-16 14:11:53,266 | INFO     | [data] control thread has finished
[2025-12-16 15:17:54] 2025-12-16 14:11:53,323 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 15:17:54] 2025-12-16 14:11:53,429 | INFO     | [payload] control thread has finished
[2025-12-16 15:17:54] 2025-12-16 14:11:54,002 | INFO     | [payload] validate_post thread has finished
[2025-12-16 15:17:54] 2025-12-16 14:11:54,036 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 15:17:54] 2025-12-16 14:11:54,037 | INFO     | [job] validate thread has finished
[2025-12-16 15:17:54] 2025-12-16 14:11:54,198 | INFO     | [data] copytool_out thread has finished
[2025-12-16 15:17:54] 2025-12-16 14:11:54,206 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 15:17:54] 2025-12-16 14:11:54,433 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 15:17:54] 2025-12-16 14:11:55,439 | INFO     | [job] queue monitor thread has finished
[2025-12-16 15:17:54] 2025-12-16 14:11:58,041 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 15:17:54] 2025-12-16 14:12:02,722 | INFO     | job.realtimelogging is not enabled
[2025-12-16 15:17:54] 2025-12-16 14:12:03,729 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 15:17:54] 2025-12-16 14:12:21,706 | INFO     | PID=494120 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 15:17:54] 2025-12-16 14:12:21,706 | INFO     | .. there are 3 such processes running
[2025-12-16 15:17:54] 2025-12-16 14:12:21,707 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 15:17:54] 2025-12-16 14:12:21,707 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 15:17:54] 2025-12-16 14:12:21,707 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 15:17:54] 2025-12-16 14:12:32,253 | INFO     | [monitor] cgroup control has ended
[2025-12-16 15:17:54] 2025-12-16 14:12:33,225 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23382956275520)>', '<ExcThread(monitor, started 23382720485120)>']
[2025-12-16 15:17:54] 2025-12-16 14:12:33,766 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 15:17:54] 2025-12-16 14:12:33,767 | INFO     | [monitor] control thread has ended
[2025-12-16 15:17:54] 2025-12-16 14:12:38,250 | INFO     | all workflow threads have been joined
[2025-12-16 15:17:54] 2025-12-16 14:12:38,251 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 15:17:54] 2025-12-16 14:12:38,251 | INFO     | traces error code: 0
[2025-12-16 15:17:54] 2025-12-16 14:12:38,251 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 15:17:54] 2025-12-16 14:12:38,380 [wrapper] ==== pilot stdout END ====
[2025-12-16 15:17:54] 2025-12-16 14:12:38,383 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 15:17:54] 2025-12-16 14:12:38,385 [wrapper] pilotpid: 494120
[2025-12-16 15:17:54] 2025-12-16 14:12:38,388 [wrapper] Pilot exit status: 0
[2025-12-16 15:17:54] 2025-12-16 14:12:38,398 [wrapper] pandaids: 6929807415
[2025-12-16 15:17:54] 2025-12-16 14:12:38,459 [wrapper] cleanup supervisor_pilot  739732 494121
[2025-12-16 15:17:54] 2025-12-16 14:12:38,463 [wrapper] Test setup, not cleaning
[2025-12-16 15:17:54] 2025-12-16 14:12:38,466 [wrapper] apfmon messages muted
[2025-12-16 15:17:54] 2025-12-16 14:12:38,469 [wrapper] ==== wrapper stdout END ====
[2025-12-16 15:17:54] 2025-12-16 14:12:38,472 [wrapper] ==== wrapper stderr END ====
[2025-12-16 15:17:54]  *** Error codes and diagnostics ***
[2025-12-16 15:17:54]     "exeErrorCode": 0,
[2025-12-16 15:17:54]     "exeErrorDiag": "",
[2025-12-16 15:17:54]     "pilotErrorCode": 0,
[2025-12-16 15:17:54]     "pilotErrorDiag": "",
[2025-12-16 15:17:54]  *** Listing of results directory ***
[2025-12-16 15:17:54] total 445996
[2025-12-16 15:17:54] -rw-r--r-- 1 boinc boinc    579449 Dec 15 16:52 pilot3.tar.gz
[2025-12-16 15:17:54] -rwx------ 1 boinc boinc     36322 Dec 15 16:52 runpilot2-wrapper.sh
[2025-12-16 15:17:54] -rw-r--r-- 1 boinc boinc      5112 Dec 15 16:53 queuedata.json
[2025-12-16 15:17:54] -rw-r--r-- 1 boinc boinc       100 Dec 16 09:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 15:17:54] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 09:32 run_atlas
[2025-12-16 15:17:54] -rw-r--r-- 1 boinc boinc       105 Dec 16 09:32 job.xml
[2025-12-16 15:17:54] -rw-r--r-- 2 boinc boinc 225972195 Dec 16 09:32 EVNT.47898824._000077.pool.root.1
[2025-12-16 15:17:54] -rw-r--r-- 2 boinc boinc    592384 Dec 16 09:32 input.tar.gz
[2025-12-16 15:17:54] -rw-r--r-- 1 boinc boinc      6425 Dec 16 09:32 init_data.xml
[2025-12-16 15:17:54] -rw-r--r-- 2 boinc boinc     15847 Dec 16 09:32 start_atlas.sh
[2025-12-16 15:17:54] drwxrwx--x 2 boinc boinc      4096 Dec 16 09:32 shared
[2025-12-16 15:17:54] -rw-r--r-- 1 boinc boinc         0 Dec 16 09:32 boinc_lockfile
[2025-12-16 15:17:54] -rw-r--r-- 1 boinc boinc      2510 Dec 16 09:32 pandaJob.out
[2025-12-16 15:17:54] -rw------- 1 boinc boinc    994528 Dec 16 09:32 agis_schedconf.cvmfs.json
[2025-12-16 15:17:54] drwx------ 5 boinc boinc      4096 Dec 16 09:32 pilot3
[2025-12-16 15:17:54] -rw------- 1 boinc boinc 220163987 Dec 16 15:11 HITS.47898826._001951.pool.root.1
[2025-12-16 15:17:54] -rw-r--r-- 1 boinc boinc       528 Dec 16 15:11 boinc_task_state.xml
[2025-12-16 15:17:54] -rw------- 1 boinc boinc      1034 Dec 16 15:11 memory_monitor_summary.json
[2025-12-16 15:17:54] -rw------- 1 boinc boinc   1516240 Dec 16 15:11 agis_ddmendpoints.agis.ALL.json
[2025-12-16 15:17:54] -rw------- 1 boinc boinc        95 Dec 16 15:11 pilot_heartbeat.json
[2025-12-16 15:17:54] -rw------- 1 boinc boinc    474873 Dec 16 15:11 log.47898826._001951.job.log.tgz.1
[2025-12-16 15:17:54] -rw------- 1 boinc boinc      7823 Dec 16 15:11 heartbeat.json
[2025-12-16 15:17:54] -rw------- 1 boinc boinc      5091 Dec 16 15:12 pilotlog.txt
[2025-12-16 15:17:54] -rw------- 1 boinc boinc   2849851 Dec 16 15:12 log.47898826._001951.job.log.1
[2025-12-16 15:17:54] -rw------- 1 boinc boinc       357 Dec 16 15:12 output.list
[2025-12-16 15:17:54] -rw-r--r-- 1 boinc boinc       620 Dec 16 15:12 runtime_log
[2025-12-16 15:17:54] -rw------- 1 boinc boinc   3348480 Dec 16 15:12 result.tar.gz
[2025-12-16 15:17:54] -rw------- 1 boinc boinc       666 Dec 16 15:12 tvxLDmf3Pp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmInTKDmfzwuBo.diag
[2025-12-16 15:17:54] -rw-r--r-- 1 boinc boinc      9206 Dec 16 15:12 runtime_log.err
[2025-12-16 15:17:54] -rw-r--r-- 1 boinc boinc        27 Dec 16 15:17 wrapper_checkpoint.txt
[2025-12-16 15:17:54] -rw-r--r-- 1 boinc boinc      8192 Dec 16 15:17 boinc_mmap_file
[2025-12-16 15:17:54] -rw-r--r-- 1 boinc boinc     21301 Dec 16 15:17 stderr.txt
[2025-12-16 15:17:54] HITS file was successfully produced:
[2025-12-16 15:17:54] -rw------- 1 boinc boinc 220163987 Dec 16 15:11 shared/HITS.pool.root.1
[2025-12-16 15:17:54]  *** Contents of shared directory: ***
[2025-12-16 15:17:54] total 439552
[2025-12-16 15:17:54] -rw-r--r-- 2 boinc boinc 225972195 Dec 16 09:32 ATLAS.root_0
[2025-12-16 15:17:54] -rw-r--r-- 2 boinc boinc    592384 Dec 16 09:32 input.tar.gz
[2025-12-16 15:17:54] -rw-r--r-- 2 boinc boinc     15847 Dec 16 09:32 start_atlas.sh
[2025-12-16 15:17:54] -rw------- 1 boinc boinc 220163987 Dec 16 15:11 HITS.pool.root.1
[2025-12-16 15:17:54] -rw------- 1 boinc boinc   3348480 Dec 16 15:12 result.tar.gz
15:17:57 (490142): run_atlas exited; CPU time 78588.124578
15:17:57 (490142): called boinc_finish(0)

</stderr_txt>
]]>

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