Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:43:14 (795491): wrapper (7.7.26015): starting
19:43:14 (795491): wrapper: running run_atlas (--nthreads 3)
[2025-12-16 19:43:14] Arguments: --nthreads 3
[2025-12-16 19:43:14] Threads: 3
[2025-12-16 19:43:14] Checking for CVMFS
[2025-12-16 19:43:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 19:43:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 19:43:14] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 19:43:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 19:43:15] 2.13.3.0 702082 479 53856 154067 3 57 28031028 31457280 0 130560 0 286706 99.988 17790 15 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-12-16 19:43:15] CVMFS is ok
[2025-12-16 19:43:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 19:43:15] Checking for apptainer binary...
[2025-12-16 19:43:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 19:43:15] Running /usr/bin/apptainer --version
[2025-12-16 19:43:15] apptainer version 1.4.4-1.el9
[2025-12-16 19:43:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 19:43:15] testio001
[2025-12-16 19:43:15] apptainer works
[2025-12-16 19:43:15] Set ATHENA_PROC_NUMBER=3
[2025-12-16 19:43:15] Set ATHENA_CORE_NUMBER=3
[2025-12-16 19:43:15] Starting ATLAS job with PandaID=6930225846
[2025-12-16 19:43:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 21:52:09]  *** The last 200 lines of the pilot log: ***
[2025-12-16 21:52:09] 2025-12-16 12:51:35,033 | INFO     | log transfer has been attempted: DONE
[2025-12-16 21:52:09] 2025-12-16 12:51:35,033 | INFO     | job 6930225846 has finished - writing final server update
[2025-12-16 21:52:09] 2025-12-16 12:51:35,033 | INFO     | total number of processed events: 400 (read)
[2025-12-16 21:52:09] 2025-12-16 12:51:35,033 | INFO     | executing command: lscpu
[2025-12-16 21:52:09] 2025-12-16 12:51:35,042 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 21:52:09] 2025-12-16 12:51:35,766 | INFO     | monitor loop #555: job 0:6930225846 is in state 'finished'
[2025-12-16 21:52:09] 2025-12-16 12:51:35,766 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 21:52:09] 2025-12-16 12:51:36,123 | INFO     | time since job start (7689s) is within the limit (174528.0s)
[2025-12-16 21:52:09] 2025-12-16 12:51:37,174 | INFO     | PID=799163 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 21:52:09] 2025-12-16 12:51:37,731 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 21:52:09] 2025-12-16 12:51:37,732 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 3663.8825000000006
[2025-12-16 21:52:09] 2025-12-16 12:51:37,733 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6930225846/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 21:52:09] 2025-12-16 12:51:37,733 | INFO     | extracted standard info from prmon json
[2025-12-16 21:52:09] 2025-12-16 12:51:37,733 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 21:52:09] 2025-12-16 12:51:37,733 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 21:52:09] 2025-12-16 12:51:37,733 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 21:52:09] 2025-12-16 12:51:37,734 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 21:52:09] 2025-12-16 12:51:37,735 | INFO     | fitting pss+swap vs Time
[2025-12-16 21:52:09] 2025-12-16 12:51:37,735 | INFO     | sum of square deviations: 620263621.2142874
[2025-12-16 21:52:09] 2025-12-16 12:51:37,735 | INFO     | sum of deviations: 4554545616.023809
[2025-12-16 21:52:09] 2025-12-16 12:51:37,735 | INFO     | mean x: 1765885642.547619
[2025-12-16 21:52:09] 2025-12-16 12:51:37,735 | INFO     | mean y: 2333359.5793650793
[2025-12-16 21:52:09] 2025-12-16 12:51:37,735 | INFO     | intersect: -12964422124.031424
[2025-12-16 21:52:09] 2025-12-16 12:51:37,735 | INFO     | chi2: 2.0196045024713336
[2025-12-16 21:52:09] 2025-12-16 12:51:37,735 | INFO     | sum of square deviations: 549315283.7024808
[2025-12-16 21:52:09] 2025-12-16 12:51:37,736 | INFO     | sum of deviations: 4576810298.322315
[2025-12-16 21:52:09] 2025-12-16 12:51:37,736 | INFO     | mean x: 1765885490.0495868
[2025-12-16 21:52:09] 2025-12-16 12:51:37,736 | INFO     | mean y: 2333407.4462809917
[2025-12-16 21:52:09] 2025-12-16 12:51:37,736 | INFO     | intersect: -14710752385.546734
[2025-12-16 21:52:09] 2025-12-16 12:51:37,736 | INFO     | chi2: 2.022636239561024
[2025-12-16 21:52:09] 2025-12-16 12:51:37,736 | INFO     | current chi2=2.022636239561024 (change=-0.15011538575896055 %)
[2025-12-16 21:52:09] 2025-12-16 12:51:37,736 | INFO     | right removable region: 120
[2025-12-16 21:52:09] 2025-12-16 12:51:37,736 | INFO     | sum of square deviations: 549311623.7024808
[2025-12-16 21:52:09] 2025-12-16 12:51:37,737 | INFO     | sum of deviations: -17215784821.57024
[2025-12-16 21:52:09] 2025-12-16 12:51:37,737 | INFO     | mean x: 1765885795.0495868
[2025-12-16 21:52:09] 2025-12-16 12:51:37,737 | INFO     | mean y: 2379591.5950413225
[2025-12-16 21:52:09] 2025-12-16 12:51:37,737 | INFO     | intersect: 55346392999.01399
[2025-12-16 21:52:09] 2025-12-16 12:51:37,737 | INFO     | chi2: 0.2189085300287835
[2025-12-16 21:52:09] 2025-12-16 12:51:37,737 | INFO     | current chi2=0.2189085300287835 (change=89.16082184601434 %)
[2025-12-16 21:52:09] 2025-12-16 12:51:37,737 | INFO     | sum of square deviations: 483987638.68965524
[2025-12-16 21:52:09] 2025-12-16 12:51:37,737 | INFO     | sum of deviations: -11565015648.758612
[2025-12-16 21:52:09] 2025-12-16 12:51:37,737 | INFO     | mean x: 1765885947.5517242
[2025-12-16 21:52:09] 2025-12-16 12:51:37,737 | INFO     | mean y: 2366357.543103448
[2025-12-16 21:52:09] 2025-12-16 12:51:37,737 | INFO     | intersect: 42198689124.48473
[2025-12-16 21:52:09] 2025-12-16 12:51:37,737 | INFO     | chi2: 0.18320594462541367
[2025-12-16 21:52:09] 2025-12-16 12:51:37,737 | INFO     | current chi2=0.18320594462541367 (change=16.30936236183917 %)
[2025-12-16 21:52:09] 2025-12-16 12:51:37,738 | INFO     | left removable region: 20
[2025-12-16 21:52:09] 2025-12-16 12:51:37,738 | INFO     | sum of square deviations: 310066634.6400005
[2025-12-16 21:52:09] 2025-12-16 12:51:37,738 | INFO     | sum of deviations: 176410389.1600001
[2025-12-16 21:52:09] 2025-12-16 12:51:37,738 | INFO     | mean x: 1765886069.56
[2025-12-16 21:52:09] 2025-12-16 12:51:37,738 | INFO     | mean y: 2335719.64
[2025-12-16 21:52:09] 2025-12-16 12:51:37,738 | INFO     | intersect: -1002353640.4550977
[2025-12-16 21:52:09] 2025-12-16 12:51:37,738 | INFO     | chi2: 0.0015127564183711729
[2025-12-16 21:52:09] 2025-12-16 12:51:37,738 | INFO     | current memory leak: 0.57 B/s (using 100 data points, chi2=0.00)
[2025-12-16 21:52:09] 2025-12-16 12:51:37,738 | INFO     | could have reported an average CPU frequency of 3614 MHz (8 samples)
[2025-12-16 21:52:09] 2025-12-16 12:51:37,738 | INFO     | ..............................
[2025-12-16 21:52:09] 2025-12-16 12:51:37,738 | INFO     | . Timing measurements:
[2025-12-16 21:52:09] 2025-12-16 12:51:37,738 | INFO     | . get job = 0 s
[2025-12-16 21:52:09] 2025-12-16 12:51:37,738 | INFO     | . initial setup = 7 s
[2025-12-16 21:52:09] 2025-12-16 12:51:37,739 | INFO     | . payload setup = 4 s
[2025-12-16 21:52:09] 2025-12-16 12:51:37,739 | INFO     | . stage-in = 0 s
[2025-12-16 21:52:09] 2025-12-16 12:51:37,739 | INFO     | . payload execution = 7661 s
[2025-12-16 21:52:09] 2025-12-16 12:51:37,739 | INFO     | . stage-out = 0 s
[2025-12-16 21:52:09] 2025-12-16 12:51:37,739 | INFO     | . log creation = 0 s
[2025-12-16 21:52:09] 2025-12-16 12:51:37,739 | INFO     | ..............................
[2025-12-16 21:52:09] 2025-12-16 12:51:37,775 | INFO     | 
[2025-12-16 21:52:09] 2025-12-16 12:51:37,775 | INFO     | job summary report
[2025-12-16 21:52:09] 2025-12-16 12:51:37,775 | INFO     | --------------------------------------------------
[2025-12-16 21:52:09] 2025-12-16 12:51:37,775 | INFO     | PanDA job id: 6930225846
[2025-12-16 21:52:09] 2025-12-16 12:51:37,775 | INFO     | task id: 47886933
[2025-12-16 21:52:09] 2025-12-16 12:51:37,775 | INFO     | errors: (none)
[2025-12-16 21:52:09] 2025-12-16 12:51:37,775 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 21:52:09] 2025-12-16 12:51:37,775 | INFO     | pilot state: finished 
[2025-12-16 21:52:09] 2025-12-16 12:51:37,775 | INFO     | transexitcode: 0
[2025-12-16 21:52:09] 2025-12-16 12:51:37,776 | INFO     | exeerrorcode: 0
[2025-12-16 21:52:09] 2025-12-16 12:51:37,776 | INFO     | exeerrordiag: 
[2025-12-16 21:52:09] 2025-12-16 12:51:37,776 | INFO     | exitcode: 0
[2025-12-16 21:52:09] 2025-12-16 12:51:37,776 | INFO     | exitmsg: OK
[2025-12-16 21:52:09] 2025-12-16 12:51:37,776 | INFO     | cpuconsumptiontime: 20356 s
[2025-12-16 21:52:09] 2025-12-16 12:51:37,776 | INFO     | nevents: 400
[2025-12-16 21:52:09] 2025-12-16 12:51:37,776 | INFO     | neventsw: 0
[2025-12-16 21:52:09] 2025-12-16 12:51:37,776 | INFO     | pid: 805695
[2025-12-16 21:52:09] 2025-12-16 12:51:37,776 | INFO     | pgrp: 805695
[2025-12-16 21:52:09] 2025-12-16 12:51:37,776 | INFO     | corecount: 3
[2025-12-16 21:52:09] 2025-12-16 12:51:37,776 | INFO     | event service: False
[2025-12-16 21:52:09] 2025-12-16 12:51:37,776 | INFO     | sizes: {0: 2283913, 3: 2284175, 10: 2284203, 7670: 2320824, 7673: 2320824, 7677: 2321018}
[2025-12-16 21:52:09] 2025-12-16 12:51:37,776 | INFO     | --------------------------------------------------
[2025-12-16 21:52:09] 2025-12-16 12:51:37,776 | INFO     | 
[2025-12-16 21:52:09] 2025-12-16 12:51:37,776 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-12-16 21:52:09] 2025-12-16 12:51:37,785 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 21:52:09] 2025-12-16 12:51:37,785 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 21:52:09] 2025-12-16 12:51:37,785 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 21:52:09] 2025-12-16 12:51:37,785 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 21:52:09] 2025-12-16 12:51:37,785 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 21:52:09] 2025-12-16 12:51:37,786 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 21:52:09] 2025-12-16 12:51:37,786 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 21:52:09] 2025-12-16 12:51:37,786 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 21:52:09] 2025-12-16 12:51:37,786 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 21:52:09] 2025-12-16 12:51:37,786 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 21:52:09] 2025-12-16 12:51:37,786 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 21:52:09] 2025-12-16 12:51:37,786 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 21:52:09] 2025-12-16 12:51:37,786 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 21:52:09] 2025-12-16 12:51:37,786 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 21:52:09] 2025-12-16 12:51:37,786 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 21:52:09] 2025-12-16 12:51:37,786 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 21:52:09] 2025-12-16 12:51:37,786 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 21:52:09] 2025-12-16 12:51:37,786 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 21:52:09] 2025-12-16 12:51:37,786 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 21:52:09] 2025-12-16 12:51:37,786 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 21:52:09] 2025-12-16 12:51:37,786 | INFO     | job 6930225846 has completed (purged errors)
[2025-12-16 21:52:09] 2025-12-16 12:51:37,786 | INFO     | overall cleanup function is called
[2025-12-16 21:52:09] 2025-12-16 12:51:38,792 | INFO     | --- collectZombieJob: --- 10, [805695]
[2025-12-16 21:52:09] 2025-12-16 12:51:38,792 | INFO     | zombie collector waiting for pid 805695
[2025-12-16 21:52:09] 2025-12-16 12:51:38,792 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 21:52:09] 2025-12-16 12:51:38,792 | INFO     | collected zombie processes
[2025-12-16 21:52:09] 2025-12-16 12:51:38,792 | INFO     | will attempt to kill all subprocesses of pid=805695
[2025-12-16 21:52:09] 2025-12-16 12:51:38,823 | INFO     | process IDs to be killed: [805695] (in reverse order)
[2025-12-16 21:52:09] 2025-12-16 12:51:38,841 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 21:52:09] 2025-12-16 12:51:38,841 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 21:52:09] 2025-12-16 12:51:38,842 | INFO     | did not find any defunct processes belonging to 805695
[2025-12-16 21:52:09] 2025-12-16 12:51:38,843 | INFO     | did not find any defunct processes belonging to 805695
[2025-12-16 21:52:09] 2025-12-16 12:51:38,843 | INFO     | ready for new job
[2025-12-16 21:52:09] 2025-12-16 12:51:38,843 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 21:52:09] 2025-12-16 12:51:38,844 | INFO     | ***************************************
[2025-12-16 21:52:09] 2025-12-16 12:51:38,844 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 21:52:09] 2025-12-16 12:51:38,844 | INFO     | ***************************************
[2025-12-16 21:52:09] 2025-12-16 12:51:38,844 | INFO     | 
[2025-12-16 21:52:09] 2025-12-16 12:51:38,845 | INFO     | architecture information:
[2025-12-16 21:52:09] 2025-12-16 12:51:38,845 | INFO     | executing command: cat /etc/os-release
[2025-12-16 21:52:09] 2025-12-16 12:51:38,851 | INFO     | cat /etc/os-release:
[2025-12-16 21:52:09] NAME="CentOS Linux"
[2025-12-16 21:52:09] VERSION="7 (Core)"
[2025-12-16 21:52:09] ID="centos"
[2025-12-16 21:52:09] ID_LIKE="rhel fedora"
[2025-12-16 21:52:09] VERSION_ID="7"
[2025-12-16 21:52:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 21:52:09] ANSI_COLOR="0;31"
[2025-12-16 21:52:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 21:52:09] HOME_URL="https://www.centos.org/"
[2025-12-16 21:52:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 21:52:09] 
[2025-12-16 21:52:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 21:52:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 21:52:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 21:52:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 21:52:09] 
[2025-12-16 21:52:09] 2025-12-16 12:51:38,852 | INFO     | ***************************************
[2025-12-16 21:52:09] 2025-12-16 12:51:39,352 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-12-16 21:52:09] 2025-12-16 12:51:39,361 | INFO     | sufficient remaining disk space (115124207616 B)
[2025-12-16 21:52:09] 2025-12-16 12:51:39,361 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 21:52:09] 2025-12-16 12:51:39,361 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 21:52:09] 2025-12-16 12:51:39,361 | INFO     | update_server=False
[2025-12-16 21:52:09] 2025-12-16 12:51:39,361 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 21:52:09] 2025-12-16 12:51:39,361 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 21:52:09] 2025-12-16 12:51:39,361 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 21:52:09] 2025-12-16 12:51:39,362 | INFO     | aborting loop
[2025-12-16 21:52:09] 2025-12-16 12:51:39,388 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 21:52:09] 2025-12-16 12:51:39,437 | INFO     | all job control threads have been joined
[2025-12-16 21:52:09] 2025-12-16 12:51:39,701 | INFO     | all data control threads have been joined
[2025-12-16 21:52:09] 2025-12-16 12:51:39,942 | INFO     | all payload control threads have been joined
[2025-12-16 21:52:09] 2025-12-16 12:51:40,033 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 21:52:09] 2025-12-16 12:51:40,120 | INFO     | [monitor] cgroup control has ended
[2025-12-16 21:52:09] 2025-12-16 12:51:40,363 | INFO     | [job] retrieve thread has finished
[2025-12-16 21:52:09] 2025-12-16 12:51:40,366 | INFO     | [job] job monitor thread has finished
[2025-12-16 21:52:09] 2025-12-16 12:51:40,366 | INFO     | [job] queue monitor thread has finished
[2025-12-16 21:52:09] 2025-12-16 12:51:40,442 | INFO     | [job] control thread has finished
[2025-12-16 21:52:09] 2025-12-16 12:51:40,474 | INFO     | [payload] failed_post thread has finished
[2025-12-16 21:52:09] 2025-12-16 12:51:40,500 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 21:52:09] 2025-12-16 12:51:40,619 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 21:52:09] 2025-12-16 12:51:40,706 | INFO     | [data] control thread has finished
[2025-12-16 21:52:09] 2025-12-16 12:51:40,744 | INFO     | [data] copytool_in thread has finished
[2025-12-16 21:52:09] 2025-12-16 12:51:40,947 | INFO     | [payload] control thread has finished
[2025-12-16 21:52:09] 2025-12-16 12:51:41,147 | INFO     | [payload] validate_post thread has finished
[2025-12-16 21:52:09] 2025-12-16 12:51:41,393 | INFO     | [data] copytool_out thread has finished
[2025-12-16 21:52:09] 2025-12-16 12:51:41,424 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 21:52:09] 2025-12-16 12:51:41,548 | INFO     | [job] validate thread has finished
[2025-12-16 21:52:09] 2025-12-16 12:51:44,038 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 21:52:09] 2025-12-16 12:51:49,533 | INFO     | job.realtimelogging is not enabled
[2025-12-16 21:52:09] 2025-12-16 12:51:50,538 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 21:52:09] 2025-12-16 12:51:50,796 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139906701461312)>', '<ExcThread(monitor, started 139906336679680)>']
[2025-12-16 21:52:09] 2025-12-16 12:51:55,821 | INFO     | all workflow threads have been joined
[2025-12-16 21:52:09] 2025-12-16 12:51:55,821 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 21:52:09] 2025-12-16 12:51:55,821 | INFO     | traces error code: 0
[2025-12-16 21:52:09] 2025-12-16 12:51:55,821 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 21:52:09] 2025-12-16 12:52:09,268 | INFO     | PID=799163 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 21:52:09] 2025-12-16 12:52:09,268 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 21:52:09] 2025-12-16 12:52:09,268 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 21:52:09] 2025-12-16 12:52:09,268 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 21:52:09] 2025-12-16 12:52:09,268 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 21:52:09] 2025-12-16 12:52:09,268 | INFO     | [monitor] control thread has ended
[2025-12-16 21:52:09] 2025-12-16 12:52:09,326 [wrapper] ==== pilot stdout END ====
[2025-12-16 21:52:09] 2025-12-16 12:52:09,328 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 21:52:09] 2025-12-16 12:52:09,329 [wrapper] pilotpid: 799163
[2025-12-16 21:52:09] 2025-12-16 12:52:09,330 [wrapper] Pilot exit status: 0
[2025-12-16 21:52:09] 2025-12-16 12:52:09,337 [wrapper] pandaids: 6930225846
[2025-12-16 21:52:09] 2025-12-16 12:52:09,347 [wrapper] cleanup supervisor_pilot  819909 799164
[2025-12-16 21:52:09] 2025-12-16 12:52:09,349 [wrapper] Test setup, not cleaning
[2025-12-16 21:52:09] 2025-12-16 12:52:09,350 [wrapper] apfmon messages muted
[2025-12-16 21:52:09] 2025-12-16 12:52:09,352 [wrapper] ==== wrapper stdout END ====
[2025-12-16 21:52:09] 2025-12-16 12:52:09,353 [wrapper] ==== wrapper stderr END ====
[2025-12-16 21:52:09]  *** Error codes and diagnostics ***
[2025-12-16 21:52:09]     "exeErrorCode": 0,
[2025-12-16 21:52:09]     "exeErrorDiag": "",
[2025-12-16 21:52:09]     "pilotErrorCode": 0,
[2025-12-16 21:52:09]     "pilotErrorDiag": "",
[2025-12-16 21:52:09]  *** Listing of results directory ***
[2025-12-16 21:52:09] total 342216
[2025-12-16 21:52:09] -rw-r--r--. 1 boinc boinc    579449 Dec 16 05:57 pilot3.tar.gz
[2025-12-16 21:52:09] -rwx------. 1 boinc boinc     36322 Dec 16 05:58 runpilot2-wrapper.sh
[2025-12-16 21:52:09] -rw-r--r--. 1 boinc boinc      5112 Dec 16 06:00 queuedata.json
[2025-12-16 21:52:09] -rw-r--r--. 1 boinc boinc       100 Dec 16 19:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 21:52:09] -rwxr-xr-x. 1 boinc boinc      7986 Dec 16 19:43 run_atlas
[2025-12-16 21:52:09] -rw-r--r--. 1 boinc boinc       105 Dec 16 19:43 job.xml
[2025-12-16 21:52:09] -rw-r--r--. 2 boinc boinc 194145614 Dec 16 19:43 EVNT.47886929._000063.pool.root.1
[2025-12-16 21:52:09] -rw-r--r--. 2 boinc boinc     15847 Dec 16 19:43 start_atlas.sh
[2025-12-16 21:52:09] drwxrwx--x. 2 boinc boinc        68 Dec 16 19:43 shared
[2025-12-16 21:52:09] -rw-r--r--. 2 boinc boinc    592401 Dec 16 19:43 input.tar.gz
[2025-12-16 21:52:09] -rw-r--r--. 1 boinc boinc         0 Dec 16 19:43 boinc_lockfile
[2025-12-16 21:52:09] -rw-r--r--. 1 boinc boinc      2512 Dec 16 19:43 pandaJob.out
[2025-12-16 21:52:09] -rw-------. 1 boinc boinc    990636 Dec 16 19:43 agis_schedconf.cvmfs.json
[2025-12-16 21:52:09] -rw-------. 1 boinc boinc   1516240 Dec 16 19:43 agis_ddmendpoints.agis.ALL.json
[2025-12-16 21:52:09] drwx------. 5 boinc boinc      4096 Dec 16 19:43 pilot3
[2025-12-16 21:52:09] -rw-r--r--. 1 boinc boinc      9318 Dec 16 20:08 init_data.xml
[2025-12-16 21:52:09] -rw-r--r--. 1 boinc boinc       529 Dec 16 21:51 boinc_task_state.xml
[2025-12-16 21:52:09] -rw-------. 1 boinc boinc 149678066 Dec 16 21:51 HITS.47886933._005705.pool.root.1
[2025-12-16 21:52:09] -rw-------. 1 boinc boinc      1015 Dec 16 21:51 memory_monitor_summary.json
[2025-12-16 21:52:09] -rw-------. 1 boinc boinc    286276 Dec 16 21:51 log.47886933._005705.job.log.tgz.1
[2025-12-16 21:52:09] -rw-------. 1 boinc boinc      7758 Dec 16 21:51 heartbeat.json
[2025-12-16 21:52:09] -rw-r--r--. 1 boinc boinc      8192 Dec 16 21:51 boinc_mmap_file
[2025-12-16 21:52:09] -rw-r--r--. 1 boinc boinc        27 Dec 16 21:51 wrapper_checkpoint.txt
[2025-12-16 21:52:09] -rw-------. 1 boinc boinc       746 Dec 16 21:52 pilotlog.txt
[2025-12-16 21:52:09] -rw-------. 1 boinc boinc        95 Dec 16 21:52 pilot_heartbeat.json
[2025-12-16 21:52:09] -rw-------. 1 boinc boinc   1069600 Dec 16 21:52 log.47886933._005705.job.log.1
[2025-12-16 21:52:09] -rw-------. 1 boinc boinc       357 Dec 16 21:52 output.list
[2025-12-16 21:52:09] -rw-r--r--. 1 boinc boinc       620 Dec 16 21:52 runtime_log
[2025-12-16 21:52:09] -rw-------. 1 boinc boinc   1372160 Dec 16 21:52 result.tar.gz
[2025-12-16 21:52:09] -rw-r--r--. 1 boinc boinc      8775 Dec 16 21:52 runtime_log.err
[2025-12-16 21:52:09] -rw-------. 1 boinc boinc       643 Dec 16 21:52 oYbMDmipUp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYKUKDmwrOS1m.diag
[2025-12-16 21:52:09] -rw-r--r--. 1 boinc boinc     21116 Dec 16 21:52 stderr.txt
[2025-12-16 21:52:09] HITS file was successfully produced:
[2025-12-16 21:52:09] -rw-------. 1 boinc boinc 149678066 Dec 16 21:51 shared/HITS.pool.root.1
[2025-12-16 21:52:09]  *** Contents of shared directory: ***
[2025-12-16 21:52:09] total 337704
[2025-12-16 21:52:09] -rw-r--r--. 2 boinc boinc 194145614 Dec 16 19:43 ATLAS.root_0
[2025-12-16 21:52:09] -rw-r--r--. 2 boinc boinc     15847 Dec 16 19:43 start_atlas.sh
[2025-12-16 21:52:09] -rw-r--r--. 2 boinc boinc    592401 Dec 16 19:43 input.tar.gz
[2025-12-16 21:52:09] -rw-------. 1 boinc boinc 149678066 Dec 16 21:51 HITS.pool.root.1
[2025-12-16 21:52:09] -rw-------. 1 boinc boinc   1372160 Dec 16 21:52 result.tar.gz
21:52:10 (795491): run_atlas exited; CPU time 20386.030718
21:52:10 (795491): called boinc_finish(0)

</stderr_txt>
]]>

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