Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:10:13 (6563): wrapper (7.7.26015): starting
07:10:13 (6563): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 07:10:13] Arguments: --nthreads 8
[2025-12-16 07:10:13] Threads: 8
[2025-12-16 07:10:13] Checking for CVMFS
[2025-12-16 07:10:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 07:10:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 07:10:14] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 07:10:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 07:10:15] 2.11.2.0 6904 478 55160 154060 3 61 12808303 25165824 4712 130560 0 664588 99.989 112949 1982 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-16 07:10:15] CVMFS is ok
[2025-12-16 07:10:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 07:10:15] Checking for apptainer binary...
[2025-12-16 07:10:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 07:10:15] Running /usr/bin/apptainer --version
[2025-12-16 07:10:15] apptainer version 1.3.2-1.el7
[2025-12-16 07:10:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 07:10:27] cg-vwn474.simple-grid.lan
[2025-12-16 07:10:27] apptainer works
[2025-12-16 07:10:27] Set ATHENA_PROC_NUMBER=8
[2025-12-16 07:10:27] Set ATHENA_CORE_NUMBER=8
[2025-12-16 07:10:27] Starting ATLAS job with PandaID=6931150090
[2025-12-16 07:10:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 11:10:36]  *** The last 200 lines of the pilot log: ***
[2025-12-16 11:10:36] 2025-12-16 10:09:43,326 | INFO     | time since job start (14140s) is within the limit (174528.0s)
[2025-12-16 11:10:36] 2025-12-16 10:09:44,173 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 11:10:36] 2025-12-16 10:09:44,174 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-12-16 11:10:36] 2025-12-16 10:09:44,175 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6931150090/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 11:10:36] 2025-12-16 10:09:44,176 | INFO     | extracted standard info from prmon json
[2025-12-16 11:10:36] 2025-12-16 10:09:44,176 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 11:10:36] 2025-12-16 10:09:44,176 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 11:10:36] 2025-12-16 10:09:44,177 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 11:10:36] 2025-12-16 10:09:44,177 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 11:10:36] 2025-12-16 10:09:44,181 | INFO     | fitting pss+swap vs Time
[2025-12-16 11:10:36] 2025-12-16 10:09:44,182 | INFO     | sum of square deviations: 3438620752.0
[2025-12-16 11:10:36] 2025-12-16 10:09:44,183 | INFO     | sum of deviations: -547020062.0001163
[2025-12-16 11:10:36] 2025-12-16 10:09:44,184 | INFO     | mean x: 1765872899.0
[2025-12-16 11:10:36] 2025-12-16 10:09:44,184 | INFO     | mean y: 2519791.4394618836
[2025-12-16 11:10:36] 2025-12-16 10:09:44,184 | INFO     | intersect: 283437046.45616317
[2025-12-16 11:10:36] 2025-12-16 10:09:44,184 | INFO     | chi2: 5.670887655188002
[2025-12-16 11:10:36] 2025-12-16 10:09:44,185 | INFO     | sum of square deviations: 3212467674.5
[2025-12-16 11:10:36] 2025-12-16 10:09:44,186 | INFO     | sum of deviations: 15133862710.000011
[2025-12-16 11:10:36] 2025-12-16 10:09:44,187 | INFO     | mean x: 1765872746.5
[2025-12-16 11:10:36] 2025-12-16 10:09:44,187 | INFO     | mean y: 2530184.7064220184
[2025-12-16 11:10:36] 2025-12-16 10:09:44,187 | INFO     | intersect: -8316456468.761195
[2025-12-16 11:10:36] 2025-12-16 10:09:44,187 | INFO     | chi2: 4.948255361576147
[2025-12-16 11:10:36] 2025-12-16 10:09:44,187 | INFO     | current chi2=4.948255361576147 (change=12.74284270030911 %)
[2025-12-16 11:10:36] 2025-12-16 10:09:44,187 | INFO     | right removable region: 217
[2025-12-16 11:10:36] 2025-12-16 10:09:44,188 | INFO     | sum of square deviations: 3212467674.5
[2025-12-16 11:10:36] 2025-12-16 10:09:44,189 | INFO     | sum of deviations: -74108758480.0
[2025-12-16 11:10:36] 2025-12-16 10:09:44,189 | INFO     | mean x: 1765873051.5
[2025-12-16 11:10:36] 2025-12-16 10:09:44,190 | INFO     | mean y: 2569305.100917431
[2025-12-16 11:10:36] 2025-12-16 10:09:44,190 | INFO     | intersect: 40739682558.80009
[2025-12-16 11:10:36] 2025-12-16 10:09:44,190 | INFO     | chi2: 1.514456026261384
[2025-12-16 11:10:36] 2025-12-16 10:09:44,190 | INFO     | current chi2=1.514456026261384 (change=73.29419804541733 %)
[2025-12-16 11:10:36] 2025-12-16 10:09:44,190 | INFO     | sum of square deviations: 2996454322.0
[2025-12-16 11:10:36] 2025-12-16 10:09:44,192 | INFO     | sum of deviations: -92589472626.99998
[2025-12-16 11:10:36] 2025-12-16 10:09:44,192 | INFO     | mean x: 1765873204.0
[2025-12-16 11:10:36] 2025-12-16 10:09:44,192 | INFO     | mean y: 2582221.8732394367
[2025-12-16 11:10:36] 2025-12-16 10:09:44,192 | INFO     | intersect: 54567494986.96453
[2025-12-16 11:10:36] 2025-12-16 10:09:44,193 | INFO     | chi2: 1.0076354966301941
[2025-12-16 11:10:36] 2025-12-16 10:09:44,193 | INFO     | current chi2=1.0076354966301941 (change=33.46551638625896 %)
[2025-12-16 11:10:36] 2025-12-16 10:09:44,193 | INFO     | sum of square deviations: 2790348132.0
[2025-12-16 11:10:36] 2025-12-16 10:09:44,195 | INFO     | sum of deviations: -90344795603.0
[2025-12-16 11:10:36] 2025-12-16 10:09:44,195 | INFO     | mean x: 1765873356.5
[2025-12-16 11:10:36] 2025-12-16 10:09:44,195 | INFO     | mean y: 2580531.8846153845
[2025-12-16 11:10:36] 2025-12-16 10:09:44,195 | INFO     | intersect: 57177334328.43922
[2025-12-16 11:10:36] 2025-12-16 10:09:44,196 | INFO     | chi2: 0.9916834195973278
[2025-12-16 11:10:36] 2025-12-16 10:09:44,196 | INFO     | current chi2=0.9916834195973278 (change=1.5831197974083338 %)
[2025-12-16 11:10:36] 2025-12-16 10:09:44,196 | INFO     | left removable region: 30
[2025-12-16 11:10:36] 2025-12-16 10:09:44,196 | INFO     | sum of square deviations: 2027639878.0
[2025-12-16 11:10:36] 2025-12-16 10:09:44,197 | INFO     | sum of deviations: -57595281218.0
[2025-12-16 11:10:36] 2025-12-16 10:09:44,198 | INFO     | mean x: 1765873631.0
[2025-12-16 11:10:36] 2025-12-16 10:09:44,198 | INFO     | mean y: 2579955.331550802
[2025-12-16 11:10:36] 2025-12-16 10:09:44,198 | INFO     | intersect: 50162368918.06163
[2025-12-16 11:10:36] 2025-12-16 10:09:44,198 | INFO     | chi2: 0.19598531127357696
[2025-12-16 11:10:36] 2025-12-16 10:09:44,198 | INFO     | current memory leak: -28.41 B/s (using 187 data points, chi2=0.20)
[2025-12-16 11:10:36] 2025-12-16 10:09:44,199 | INFO     | could have reported an average CPU frequency of 2249 MHz (11 samples)
[2025-12-16 11:10:36] 2025-12-16 10:09:44,199 | INFO     | ..............................
[2025-12-16 11:10:36] 2025-12-16 10:09:44,199 | INFO     | . Timing measurements:
[2025-12-16 11:10:36] 2025-12-16 10:09:44,199 | INFO     | . get job = 0 s
[2025-12-16 11:10:36] 2025-12-16 10:09:44,199 | INFO     | . initial setup = 7 s
[2025-12-16 11:10:36] 2025-12-16 10:09:44,199 | INFO     | . payload setup = 133 s
[2025-12-16 11:10:36] 2025-12-16 10:09:44,199 | INFO     | . stage-in = 0 s
[2025-12-16 11:10:36] 2025-12-16 10:09:44,199 | INFO     | . payload execution = 13720 s
[2025-12-16 11:10:36] 2025-12-16 10:09:44,200 | INFO     | . stage-out = 5 s
[2025-12-16 11:10:36] 2025-12-16 10:09:44,200 | INFO     | . log creation = 1 s
[2025-12-16 11:10:36] 2025-12-16 10:09:44,200 | INFO     | ..............................
[2025-12-16 11:10:36] 2025-12-16 10:09:44,322 | INFO     | 
[2025-12-16 11:10:36] 2025-12-16 10:09:44,322 | INFO     | job summary report
[2025-12-16 11:10:36] 2025-12-16 10:09:44,322 | INFO     | --------------------------------------------------
[2025-12-16 11:10:36] 2025-12-16 10:09:44,322 | INFO     | PanDA job id: 6931150090
[2025-12-16 11:10:36] 2025-12-16 10:09:44,322 | INFO     | task id: 47898896
[2025-12-16 11:10:36] 2025-12-16 10:09:44,323 | INFO     | errors: (none)
[2025-12-16 11:10:36] 2025-12-16 10:09:44,323 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 11:10:36] 2025-12-16 10:09:44,323 | INFO     | pilot state: finished 
[2025-12-16 11:10:36] 2025-12-16 10:09:44,323 | INFO     | transexitcode: 0
[2025-12-16 11:10:36] 2025-12-16 10:09:44,323 | INFO     | exeerrorcode: 0
[2025-12-16 11:10:36] 2025-12-16 10:09:44,323 | INFO     | exeerrordiag: 
[2025-12-16 11:10:36] 2025-12-16 10:09:44,323 | INFO     | exitcode: 0
[2025-12-16 11:10:36] 2025-12-16 10:09:44,323 | INFO     | exitmsg: OK
[2025-12-16 11:10:36] 2025-12-16 10:09:44,323 | INFO     | cpuconsumptiontime: 51291 s
[2025-12-16 11:10:36] 2025-12-16 10:09:44,323 | INFO     | nevents: 400
[2025-12-16 11:10:36] 2025-12-16 10:09:44,324 | INFO     | neventsw: 0
[2025-12-16 11:10:36] 2025-12-16 10:09:44,324 | INFO     | pid: 16928
[2025-12-16 11:10:36] 2025-12-16 10:09:44,324 | INFO     | pgrp: 16928
[2025-12-16 11:10:36] 2025-12-16 10:09:44,324 | INFO     | corecount: 8
[2025-12-16 11:10:36] 2025-12-16 10:09:44,324 | INFO     | event service: False
[2025-12-16 11:10:36] 2025-12-16 10:09:44,324 | INFO     | sizes: {0: 2283771, 1: 2283970, 12: 2283970, 22: 2283998, 33: 2284026, 44: 2284082, 55: 2284238, 65: 2284266, 76: 2284294, 87: 2284350, 90: 2284640, 97: 2284948, 1
[2025-12-16 11:10:36] 2025-12-16 10:09:44,324 | INFO     | --------------------------------------------------
[2025-12-16 11:10:36] 2025-12-16 10:09:44,324 | INFO     | 
[2025-12-16 11:10:36] 2025-12-16 10:09:44,324 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-12-16 11:10:36] 2025-12-16 10:09:44,516 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 11:10:36] 2025-12-16 10:09:44,516 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 11:10:36] 2025-12-16 10:09:44,516 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 11:10:36] 2025-12-16 10:09:44,516 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 11:10:36] 2025-12-16 10:09:44,517 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 11:10:36] 2025-12-16 10:09:44,517 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 11:10:36] 2025-12-16 10:09:44,517 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 11:10:36] 2025-12-16 10:09:44,517 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 11:10:36] 2025-12-16 10:09:44,517 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 11:10:36] 2025-12-16 10:09:44,517 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 11:10:36] 2025-12-16 10:09:44,517 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 11:10:36] 2025-12-16 10:09:44,517 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 11:10:36] 2025-12-16 10:09:44,518 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 11:10:36] 2025-12-16 10:09:44,518 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 11:10:36] 2025-12-16 10:09:44,518 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 11:10:36] 2025-12-16 10:09:44,518 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 11:10:36] 2025-12-16 10:09:44,518 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 11:10:36] 2025-12-16 10:09:44,518 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 11:10:36] 2025-12-16 10:09:44,518 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 11:10:36] 2025-12-16 10:09:44,518 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 11:10:36] 2025-12-16 10:09:44,519 | INFO     | job 6931150090 has completed (purged errors)
[2025-12-16 11:10:36] 2025-12-16 10:09:44,519 | INFO     | overall cleanup function is called
[2025-12-16 11:10:36] 2025-12-16 10:09:45,527 | INFO     | --- collectZombieJob: --- 10, [16928]
[2025-12-16 11:10:36] 2025-12-16 10:09:45,527 | INFO     | zombie collector waiting for pid 16928
[2025-12-16 11:10:36] 2025-12-16 10:09:45,527 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 11:10:36] 2025-12-16 10:09:45,528 | INFO     | collected zombie processes
[2025-12-16 11:10:36] 2025-12-16 10:09:45,528 | INFO     | will attempt to kill all subprocesses of pid=16928
[2025-12-16 11:10:36] 2025-12-16 10:09:45,655 | INFO     | process IDs to be killed: [16928] (in reverse order)
[2025-12-16 11:10:36] 2025-12-16 10:09:46,316 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 11:10:36] 2025-12-16 10:09:46,316 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 11:10:36] 2025-12-16 10:09:46,319 | INFO     | did not find any defunct processes belonging to 16928
[2025-12-16 11:10:36] 2025-12-16 10:09:46,323 | INFO     | did not find any defunct processes belonging to 16928
[2025-12-16 11:10:36] 2025-12-16 10:09:46,323 | INFO     | ready for new job
[2025-12-16 11:10:36] 2025-12-16 10:09:46,323 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 11:10:36] 2025-12-16 10:09:46,325 | INFO     | ***************************************
[2025-12-16 11:10:36] 2025-12-16 10:09:46,325 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 11:10:36] 2025-12-16 10:09:46,325 | INFO     | ***************************************
[2025-12-16 11:10:36] 2025-12-16 10:09:46,326 | INFO     | 
[2025-12-16 11:10:36] 2025-12-16 10:09:46,326 | INFO     | pilot is running in a VM
[2025-12-16 11:10:36] 2025-12-16 10:09:46,326 | INFO     | architecture information:
[2025-12-16 11:10:36] 2025-12-16 10:09:46,344 | INFO     | executing command: cat /etc/os-release
[2025-12-16 11:10:36] 2025-12-16 10:09:46,609 | INFO     | cat /etc/os-release:
[2025-12-16 11:10:36] NAME="CentOS Linux"
[2025-12-16 11:10:36] VERSION="7 (Core)"
[2025-12-16 11:10:36] ID="centos"
[2025-12-16 11:10:36] ID_LIKE="rhel fedora"
[2025-12-16 11:10:36] VERSION_ID="7"
[2025-12-16 11:10:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 11:10:36] ANSI_COLOR="0;31"
[2025-12-16 11:10:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 11:10:36] HOME_URL="https://www.centos.org/"
[2025-12-16 11:10:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 11:10:36] 
[2025-12-16 11:10:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 11:10:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 11:10:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 11:10:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 11:10:36] 
[2025-12-16 11:10:36] 2025-12-16 10:09:46,609 | INFO     | ***************************************
[2025-12-16 11:10:36] 2025-12-16 10:09:47,112 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-12-16 11:10:36] 2025-12-16 10:09:47,253 | INFO     | sufficient remaining disk space (495991128064 B)
[2025-12-16 11:10:36] 2025-12-16 10:09:47,254 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 11:10:36] 2025-12-16 10:09:47,254 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 11:10:36] 2025-12-16 10:09:47,254 | INFO     | update_server=False
[2025-12-16 11:10:36] 2025-12-16 10:09:47,254 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 11:10:36] 2025-12-16 10:09:47,255 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 11:10:36] 2025-12-16 10:09:47,255 | INFO     | aborting loop
[2025-12-16 11:10:36] 2025-12-16 10:09:47,607 | INFO     | all payload control threads have been joined
[2025-12-16 11:10:36] 2025-12-16 10:09:48,167 | INFO     | all data control threads have been joined
[2025-12-16 11:10:36] 2025-12-16 10:09:48,260 | INFO     | [job] job monitor thread has finished
[2025-12-16 11:10:36] 2025-12-16 10:09:48,261 | INFO     | [job] retrieve thread has finished
[2025-12-16 11:10:36] 2025-12-16 10:09:48,273 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 11:10:36] 2025-12-16 10:09:48,285 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 11:10:36] 2025-12-16 10:09:48,407 | INFO     | all job control threads have been joined
[2025-12-16 11:10:36] 2025-12-16 10:09:48,586 | INFO     | [job] validate thread has finished
[2025-12-16 11:10:36] 2025-12-16 10:09:48,613 | INFO     | [payload] control thread has finished
[2025-12-16 11:10:36] 2025-12-16 10:09:48,763 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 11:10:36] 2025-12-16 10:09:48,842 | INFO     | [payload] failed_post thread has finished
[2025-12-16 11:10:36] 2025-12-16 10:09:48,855 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 11:10:36] 2025-12-16 10:09:49,173 | INFO     | [data] control thread has finished
[2025-12-16 11:10:36] 2025-12-16 10:09:49,304 | INFO     | [data] copytool_in thread has finished
[2025-12-16 11:10:36] 2025-12-16 10:09:49,337 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 11:10:36] 2025-12-16 10:09:49,413 | INFO     | [job] control thread has finished
[2025-12-16 11:10:36] 2025-12-16 10:09:49,444 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 11:10:36] 2025-12-16 10:09:49,714 | INFO     | [payload] validate_post thread has finished
[2025-12-16 11:10:36] 2025-12-16 10:09:49,721 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 11:10:36] 2025-12-16 10:09:50,280 | INFO     | [data] copytool_out thread has finished
[2025-12-16 11:10:36] 2025-12-16 10:09:50,343 | INFO     | [job] queue monitor thread has finished
[2025-12-16 11:10:36] 2025-12-16 10:09:52,864 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 11:10:36] 2025-12-16 10:10:16,517 | INFO     | PID=10391 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 11:10:36] 2025-12-16 10:10:16,517 | INFO     | .. there are 9 such processes running
[2025-12-16 11:10:36] 2025-12-16 10:10:16,517 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 11:10:36] 2025-12-16 10:10:16,517 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 11:10:36] 2025-12-16 10:10:16,518 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 11:10:36] 2025-12-16 10:10:26,739 | INFO     | [monitor] cgroup control has ended
[2025-12-16 11:10:36] 2025-12-16 10:10:27,013 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139851463624512)>', '<ExcThread(monitor, started 139851013797632)>']
[2025-12-16 11:10:36] 2025-12-16 10:10:27,582 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 11:10:36] 2025-12-16 10:10:27,582 | INFO     | [monitor] control thread has ended
[2025-12-16 11:10:36] 2025-12-16 10:10:32,039 | INFO     | all workflow threads have been joined
[2025-12-16 11:10:36] 2025-12-16 10:10:32,039 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 11:10:36] 2025-12-16 10:10:32,040 | INFO     | traces error code: 0
[2025-12-16 11:10:36] 2025-12-16 10:10:32,040 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 11:10:36] 2025-12-16 10:10:32,413 [wrapper] ==== pilot stdout END ====
[2025-12-16 11:10:36] 2025-12-16 10:10:32,521 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 11:10:36] 2025-12-16 10:10:32,616 [wrapper] pilotpid: 10391
[2025-12-16 11:10:36] 2025-12-16 10:10:32,710 [wrapper] Pilot exit status: 0
[2025-12-16 11:10:36] 2025-12-16 10:10:33,182 [wrapper] pandaids: 6931150090
[2025-12-16 11:10:36] 2025-12-16 10:10:34,283 [wrapper] cleanup supervisor_pilot  6432 10392
[2025-12-16 11:10:36] 2025-12-16 10:10:34,381 [wrapper] Test setup, not cleaning
[2025-12-16 11:10:36] 2025-12-16 10:10:34,495 [wrapper] apfmon messages muted
[2025-12-16 11:10:36] 2025-12-16 10:10:34,596 [wrapper] ==== wrapper stdout END ====
[2025-12-16 11:10:36] 2025-12-16 10:10:34,681 [wrapper] ==== wrapper stderr END ====
[2025-12-16 11:10:36]  *** Error codes and diagnostics ***
[2025-12-16 11:10:36]     "exeErrorCode": 0,
[2025-12-16 11:10:36]     "exeErrorDiag": "",
[2025-12-16 11:10:36]     "pilotErrorCode": 0,
[2025-12-16 11:10:36]     "pilotErrorDiag": "",
[2025-12-16 11:10:36]  *** Listing of results directory ***
[2025-12-16 11:10:36] total 381848
[2025-12-16 11:10:36] -rw-r--r--. 1 boinc boinc    579449 Dec 15 02:16 pilot3.tar.gz
[2025-12-16 11:10:36] -rwx------. 1 boinc boinc     36322 Dec 15 02:16 runpilot2-wrapper.sh
[2025-12-16 11:10:36] -rw-r--r--. 1 boinc boinc      5112 Dec 15 02:16 queuedata.json
[2025-12-16 11:10:36] -rw-r--r--. 1 boinc boinc       100 Dec 16 07:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 11:10:36] -rwxr-xr-x. 1 boinc boinc      7986 Dec 16 07:10 run_atlas
[2025-12-16 11:10:36] -rw-r--r--. 1 boinc boinc       105 Dec 16 07:10 job.xml
[2025-12-16 11:10:36] -rw-r--r--. 1 boinc boinc      6393 Dec 16 07:10 init_data.xml
[2025-12-16 11:10:36] -rw-r--r--. 2 boinc boinc 197875308 Dec 16 07:10 EVNT.47898894._000046.pool.root.1
[2025-12-16 11:10:36] -rw-r--r--. 2 boinc boinc     15847 Dec 16 07:10 start_atlas.sh
[2025-12-16 11:10:36] drwxrwx--x. 2 boinc boinc        68 Dec 16 07:10 shared
[2025-12-16 11:10:36] -rw-r--r--. 2 boinc boinc    592398 Dec 16 07:10 input.tar.gz
[2025-12-16 11:10:36] -rw-r--r--. 1 boinc boinc         0 Dec 16 07:10 boinc_lockfile
[2025-12-16 11:10:36] -rw-r--r--. 1 boinc boinc      2502 Dec 16 07:10 pandaJob.out
[2025-12-16 11:10:36] -rw-------. 1 boinc boinc    994531 Dec 16 07:13 agis_schedconf.cvmfs.json
[2025-12-16 11:10:36] drwx------. 5 boinc boinc      4096 Dec 16 07:14 pilot3
[2025-12-16 11:10:36] -rw-------. 1 boinc boinc 184567339 Dec 16 11:07 HITS.47898896._001131.pool.root.1
[2025-12-16 11:10:36] -rw-r--r--. 1 boinc boinc       531 Dec 16 11:07 boinc_task_state.xml
[2025-12-16 11:10:36] -rw-------. 1 boinc boinc      1018 Dec 16 11:08 memory_monitor_summary.json
[2025-12-16 11:10:36] -rw-------. 1 boinc boinc   1516240 Dec 16 11:08 agis_ddmendpoints.agis.ALL.json
[2025-12-16 11:10:36] -rw-------. 1 boinc boinc    436319 Dec 16 11:08 log.47898896._001131.job.log.tgz.1
[2025-12-16 11:10:36] -rw-------. 1 boinc boinc        95 Dec 16 11:09 pilot_heartbeat.json
[2025-12-16 11:10:36] -rw-------. 1 boinc boinc      7779 Dec 16 11:09 heartbeat.json
[2025-12-16 11:10:36] -rw-r--r--. 1 boinc boinc        28 Dec 16 11:10 wrapper_checkpoint.txt
[2025-12-16 11:10:36] -rw-r--r--. 1 boinc boinc      8192 Dec 16 11:10 boinc_mmap_file
[2025-12-16 11:10:36] -rw-------. 1 boinc boinc      4884 Dec 16 11:10 pilotlog.txt
[2025-12-16 11:10:36] -rw-------. 1 boinc boinc   1894571 Dec 16 11:10 log.47898896._001131.job.log.1
[2025-12-16 11:10:36] -rw-------. 1 boinc boinc       357 Dec 16 11:10 output.list
[2025-12-16 11:10:36] -rw-r--r--. 1 boinc boinc       620 Dec 16 11:10 runtime_log
[2025-12-16 11:10:36] -rw-------. 1 boinc boinc   2355200 Dec 16 11:10 result.tar.gz
[2025-12-16 11:10:36] -rw-r--r--. 1 boinc boinc      8817 Dec 16 11:10 runtime_log.err
[2025-12-16 11:10:36] -rw-------. 1 boinc boinc       657 Dec 16 11:10 LVBNDmoNCp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGlWKDmFHGpDo.diag
[2025-12-16 11:10:36] -rw-r--r--. 1 boinc boinc     20759 Dec 16 11:10 stderr.txt
[2025-12-16 11:10:36] HITS file was successfully produced:
[2025-12-16 11:10:36] -rw-------. 1 boinc boinc 184567339 Dec 16 11:07 shared/HITS.pool.root.1
[2025-12-16 11:10:36]  *** Contents of shared directory: ***
[2025-12-16 11:10:36] total 376380
[2025-12-16 11:10:36] -rw-r--r--. 2 boinc boinc 197875308 Dec 16 07:10 ATLAS.root_0
[2025-12-16 11:10:36] -rw-r--r--. 2 boinc boinc     15847 Dec 16 07:10 start_atlas.sh
[2025-12-16 11:10:36] -rw-r--r--. 2 boinc boinc    592398 Dec 16 07:10 input.tar.gz
[2025-12-16 11:10:36] -rw-------. 1 boinc boinc 184567339 Dec 16 11:07 HITS.pool.root.1
[2025-12-16 11:10:36] -rw-------. 1 boinc boinc   2355200 Dec 16 11:10 result.tar.gz
11:10:38 (6563): run_atlas exited; CPU time 51473.412048
11:10:38 (6563): called boinc_finish(0)

</stderr_txt>
]]>

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