Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:59:00 (1699062): wrapper (7.7.26015): starting
10:59:00 (1699062): wrapper: running run_atlas (--nthreads 2)
[2025-12-16 10:59:00] Arguments: --nthreads 2
[2025-12-16 10:59:00] Threads: 2
[2025-12-16 10:59:00] Checking for CVMFS
[2025-12-16 10:59:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 10:59:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 10:59:00] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 10:59:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 10:59:00] 2.9.2.0 925053 4001 64760 154065 2 57 35430938 36864001 0 130560 0 2062684 99.986 143579 19787 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-16 10:59:00] CVMFS is ok
[2025-12-16 10:59:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 10:59:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 10:59:00] Further information can be found at the LHC@home message board.
[2025-12-16 10:59:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 10:59:00] Checking for apptainer binary...
[2025-12-16 10:59:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 10:59:00] Running /usr/bin/apptainer --version
[2025-12-16 10:59:00] apptainer version 1.4.1-1.1
[2025-12-16 10:59:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 10:59:00] atlasA219
[2025-12-16 10:59:00] apptainer works
[2025-12-16 10:59:00] Set ATHENA_PROC_NUMBER=2
[2025-12-16 10:59:00] Set ATHENA_CORE_NUMBER=2
[2025-12-16 10:59:00] Starting ATLAS job with PandaID=6929805709
[2025-12-16 10:59:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 13:09:50]  *** The last 200 lines of the pilot log: ***
[2025-12-16 13:09:50] 2025-12-16 12:09:19,029 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 13:09:50] 2025-12-16 12:09:19,029 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 13:09:50] 2025-12-16 12:09:19,029 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 13:09:50] 2025-12-16 12:09:19,029 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 13:09:50] 2025-12-16 12:09:19,029 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 13:09:50] 2025-12-16 12:09:19,029 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 13:09:50] 2025-12-16 12:09:19,029 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 13:09:50] 2025-12-16 12:09:19,029 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 13:09:50] 2025-12-16 12:09:19,029 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 13:09:50] 2025-12-16 12:09:19,029 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 13:09:50] 2025-12-16 12:09:19,029 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 13:09:50] 2025-12-16 12:09:19,029 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 13:09:50] 2025-12-16 12:09:19,029 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 13:09:50] 2025-12-16 12:09:19,029 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 13:09:50] 2025-12-16 12:09:19,029 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 13:09:50] 2025-12-16 12:09:19,029 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 13:09:50] 2025-12-16 12:09:19,029 | INFO     | job 6929805709 has completed (purged errors)
[2025-12-16 13:09:50] 2025-12-16 12:09:19,029 | INFO     | overall cleanup function is called
[2025-12-16 13:09:50] 2025-12-16 12:09:20,035 | INFO     | --- collectZombieJob: --- 10, [1709189]
[2025-12-16 13:09:50] 2025-12-16 12:09:20,036 | INFO     | zombie collector waiting for pid 1709189
[2025-12-16 13:09:50] 2025-12-16 12:09:20,036 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 13:09:50] 2025-12-16 12:09:20,036 | INFO     | collected zombie processes
[2025-12-16 13:09:50] 2025-12-16 12:09:20,036 | INFO     | will attempt to kill all subprocesses of pid=1709189
[2025-12-16 13:09:50] 2025-12-16 12:09:20,069 | INFO     | process IDs to be killed: [1709189] (in reverse order)
[2025-12-16 13:09:50] 2025-12-16 12:09:20,091 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 13:09:50] 2025-12-16 12:09:20,091 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 13:09:50] 2025-12-16 12:09:20,091 | INFO     | did not find any defunct processes belonging to 1709189
[2025-12-16 13:09:50] 2025-12-16 12:09:20,092 | INFO     | did not find any defunct processes belonging to 1709189
[2025-12-16 13:09:50] 2025-12-16 12:09:20,092 | INFO     | ready for new job
[2025-12-16 13:09:50] 2025-12-16 12:09:20,092 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 13:09:50] 2025-12-16 12:09:20,093 | INFO     | ***************************************
[2025-12-16 13:09:50] 2025-12-16 12:09:20,093 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 13:09:50] 2025-12-16 12:09:20,093 | INFO     | ***************************************
[2025-12-16 13:09:50] 2025-12-16 12:09:20,093 | INFO     | 
[2025-12-16 13:09:50] 2025-12-16 12:09:20,093 | INFO     | architecture information:
[2025-12-16 13:09:50] 2025-12-16 12:09:20,093 | INFO     | executing command: cat /etc/os-release
[2025-12-16 13:09:50] 2025-12-16 12:09:20,102 | INFO     | cat /etc/os-release:
[2025-12-16 13:09:50] NAME="CentOS Linux"
[2025-12-16 13:09:50] VERSION="7 (Core)"
[2025-12-16 13:09:50] ID="centos"
[2025-12-16 13:09:50] ID_LIKE="rhel fedora"
[2025-12-16 13:09:50] VERSION_ID="7"
[2025-12-16 13:09:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 13:09:50] ANSI_COLOR="0;31"
[2025-12-16 13:09:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 13:09:50] HOME_URL="https://www.centos.org/"
[2025-12-16 13:09:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 13:09:50] 
[2025-12-16 13:09:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 13:09:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 13:09:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 13:09:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 13:09:50] 
[2025-12-16 13:09:50] 2025-12-16 12:09:20,102 | INFO     | ***************************************
[2025-12-16 13:09:50] 2025-12-16 12:09:20,605 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-16 13:09:50] 2025-12-16 12:09:20,617 | INFO     | sufficient remaining disk space (175002091520 B)
[2025-12-16 13:09:50] 2025-12-16 12:09:20,617 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 13:09:50] 2025-12-16 12:09:20,617 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 13:09:50] 2025-12-16 12:09:20,617 | INFO     | update_server=False
[2025-12-16 13:09:50] 2025-12-16 12:09:20,617 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 13:09:50] 2025-12-16 12:09:20,617 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 13:09:50] 2025-12-16 12:09:20,642 | INFO     | all job control threads have been joined
[2025-12-16 13:09:50] 2025-12-16 12:09:20,677 | INFO     | all payload control threads have been joined
[2025-12-16 13:09:50] 2025-12-16 12:09:20,777 | INFO     | all data control threads have been joined
[2025-12-16 13:09:50] 2025-12-16 12:09:21,160 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 13:09:50] 2025-12-16 12:09:21,160 | INFO     | aborting loop
[2025-12-16 13:09:50] 2025-12-16 12:09:21,622 | INFO     | [job] retrieve thread has finished
[2025-12-16 13:09:50] 2025-12-16 12:09:21,623 | INFO     | [job] queue monitor thread has finished
[2025-12-16 13:09:50] 2025-12-16 12:09:21,648 | INFO     | [job] control thread has finished
[2025-12-16 13:09:50] 2025-12-16 12:09:21,649 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 13:09:50] 2025-12-16 12:09:21,683 | INFO     | [payload] control thread has finished
[2025-12-16 13:09:50] 2025-12-16 12:09:21,708 | INFO     | [data] copytool_in thread has finished
[2025-12-16 13:09:50] 2025-12-16 12:09:21,782 | INFO     | [data] control thread has finished
[2025-12-16 13:09:50] 2025-12-16 12:09:22,104 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 13:09:50] 2025-12-16 12:09:22,127 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 13:09:50] 2025-12-16 12:09:22,166 | INFO     | [job] job monitor thread has finished
[2025-12-16 13:09:50] 2025-12-16 12:09:22,347 | INFO     | [payload] failed_post thread has finished
[2025-12-16 13:09:50] 2025-12-16 12:09:22,812 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 13:09:50] 2025-12-16 12:09:22,847 | INFO     | [payload] validate_post thread has finished
[2025-12-16 13:09:50] 2025-12-16 12:09:22,873 | INFO     | [job] validate thread has finished
[2025-12-16 13:09:50] 2025-12-16 12:09:23,012 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 13:09:50] 2025-12-16 12:09:24,092 | INFO     | [monitor] cgroup control has ended
[2025-12-16 13:09:50] 2025-12-16 12:09:24,110 | INFO     | [data] copytool_out thread has finished
[2025-12-16 13:09:50] 2025-12-16 12:09:26,134 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 13:09:50] 2025-12-16 12:09:31,449 | INFO     | job.realtimelogging is not enabled
[2025-12-16 13:09:50] 2025-12-16 12:09:32,455 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 13:09:50] 2025-12-16 12:09:33,238 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140597462239040)>', '<ExcThread(monitor, started 140596660385536)>']
[2025-12-16 13:09:50] 2025-12-16 12:09:38,264 | INFO     | all workflow threads have been joined
[2025-12-16 13:09:50] 2025-12-16 12:09:38,265 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 13:09:50] 2025-12-16 12:09:38,266 | INFO     | traces error code: 0
[2025-12-16 13:09:50] 2025-12-16 12:09:38,266 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 13:09:50] 2025-12-16 12:09:50,704 | INFO     | PID=1702769 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 13:09:50] 2025-12-16 12:09:50,704 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 13:09:50] 2025-12-16 12:09:50,704 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 13:09:50] 2025-12-16 12:09:50,704 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 13:09:50] 2025-12-16 12:09:50,704 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 13:09:50] 2025-12-16 12:09:50,704 | INFO     | [monitor] control thread has ended
[2025-12-16 13:09:50] 2025-12-16 12:09:50,753 [wrapper] ==== pilot stdout END ====
[2025-12-16 13:09:50] 2025-12-16 12:09:50,755 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 13:09:50] 2025-12-16 12:09:50,757 [wrapper] pilotpid: 1702769
[2025-12-16 13:09:50] 2025-12-16 12:09:50,760 [wrapper] Pilot exit status: 0
[2025-12-16 13:09:50] 2025-12-16 12:09:50,766 [wrapper] pandaids: 6929805709
[2025-12-16 13:09:50] 2025-12-16 12:09:50,782 [wrapper] cleanup supervisor_pilot 1723589 1702770
[2025-12-16 13:09:50] 2025-12-16 12:09:50,784 [wrapper] Test setup, not cleaning
[2025-12-16 13:09:50] 2025-12-16 12:09:50,787 [wrapper] apfmon messages muted
[2025-12-16 13:09:50] 2025-12-16 12:09:50,789 [wrapper] ==== wrapper stdout END ====
[2025-12-16 13:09:50] 2025-12-16 12:09:50,791 [wrapper] ==== wrapper stderr END ====
[2025-12-16 13:09:50]  *** Error codes and diagnostics ***
[2025-12-16 13:09:50]     "exeErrorCode": 0,
[2025-12-16 13:09:50]     "exeErrorDiag": "",
[2025-12-16 13:09:50]     "pilotErrorCode": 0,
[2025-12-16 13:09:50]     "pilotErrorDiag": "",
[2025-12-16 13:09:50]  *** Listing of results directory ***
[2025-12-16 13:09:50] total 339532
[2025-12-16 13:09:50] -rw-r--r-- 1 boinc boinc    579449 Dec 15 14:27 pilot3.tar.gz
[2025-12-16 13:09:50] -rwx------ 1 boinc boinc     36322 Dec 15 14:30 runpilot2-wrapper.sh
[2025-12-16 13:09:50] -rw-r--r-- 1 boinc boinc      5112 Dec 15 14:33 queuedata.json
[2025-12-16 13:09:50] -rw-r--r-- 1 boinc boinc       100 Dec 16 10:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 13:09:50] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 10:59 run_atlas
[2025-12-16 13:09:50] -rw-r--r-- 1 boinc boinc       105 Dec 16 10:59 job.xml
[2025-12-16 13:09:50] -rw-r--r-- 2 boinc boinc 191740306 Dec 16 10:59 EVNT.47886929._000183.pool.root.1
[2025-12-16 13:09:50] -rw-r--r-- 2 boinc boinc    592392 Dec 16 10:59 input.tar.gz
[2025-12-16 13:09:50] -rw-r--r-- 2 boinc boinc     15847 Dec 16 10:59 start_atlas.sh
[2025-12-16 13:09:50] drwxrwx--x 2 boinc boinc      4096 Dec 16 10:59 shared
[2025-12-16 13:09:50] -rw-r--r-- 1 boinc boinc         0 Dec 16 10:59 boinc_setup_complete
[2025-12-16 13:09:50] -rw-r--r-- 1 boinc boinc      6208 Dec 16 10:59 init_data.xml
[2025-12-16 13:09:50] -rw-r--r-- 1 boinc boinc         0 Dec 16 10:59 boinc_lockfile
[2025-12-16 13:09:50] -rw-r--r-- 1 boinc boinc      2513 Dec 16 10:59 pandaJob.out
[2025-12-16 13:09:50] -rw------- 1 boinc boinc    994525 Dec 16 10:59 agis_schedconf.cvmfs.json
[2025-12-16 13:09:50] -rw------- 1 boinc boinc   1516240 Dec 16 10:59 agis_ddmendpoints.agis.ALL.json
[2025-12-16 13:09:50] drwx------ 5 boinc boinc      4096 Dec 16 10:59 pilot3
[2025-12-16 13:09:50] -rw------- 1 boinc boinc 149226309 Dec 16 13:08 HITS.47886933._005274.pool.root.1
[2025-12-16 13:09:50] -rw-r--r-- 1 boinc boinc       529 Dec 16 13:09 boinc_task_state.xml
[2025-12-16 13:09:50] -rw------- 1 boinc boinc      1014 Dec 16 13:09 memory_monitor_summary.json
[2025-12-16 13:09:50] -rw------- 1 boinc boinc    282993 Dec 16 13:09 log.47886933._005274.job.log.tgz.1
[2025-12-16 13:09:50] -rw------- 1 boinc boinc        95 Dec 16 13:09 pilot_heartbeat.json
[2025-12-16 13:09:50] -rw------- 1 boinc boinc      7752 Dec 16 13:09 heartbeat.json
[2025-12-16 13:09:50] -rw-r--r-- 1 boinc boinc        27 Dec 16 13:09 wrapper_checkpoint.txt
[2025-12-16 13:09:50] -rw-r--r-- 1 boinc boinc      8192 Dec 16 13:09 boinc_mmap_file
[2025-12-16 13:09:50] -rw------- 1 boinc boinc       747 Dec 16 13:09 pilotlog.txt
[2025-12-16 13:09:50] -rw------- 1 boinc boinc   1120875 Dec 16 13:09 log.47886933._005274.job.log.1
[2025-12-16 13:09:50] -rw------- 1 boinc boinc       357 Dec 16 13:09 output.list
[2025-12-16 13:09:50] -rw-r--r-- 1 boinc boinc       620 Dec 16 13:09 runtime_log
[2025-12-16 13:09:50] -rw------- 1 boinc boinc   1423360 Dec 16 13:09 result.tar.gz
[2025-12-16 13:09:50] -rw------- 1 boinc boinc       663 Dec 16 13:09 x0PKDmapNp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmadTKDm5PDQvn.diag
[2025-12-16 13:09:50] -rw-r--r-- 1 boinc boinc      8912 Dec 16 13:09 runtime_log.err
[2025-12-16 13:09:50] -rw-r--r-- 1 boinc boinc     12549 Dec 16 13:09 stderr.txt
[2025-12-16 13:09:50] HITS file was successfully produced:
[2025-12-16 13:09:50] -rw------- 1 boinc boinc 149226309 Dec 16 13:08 shared/HITS.pool.root.1
[2025-12-16 13:09:50]  *** Contents of shared directory: ***
[2025-12-16 13:09:50] total 334972
[2025-12-16 13:09:50] -rw-r--r-- 2 boinc boinc 191740306 Dec 16 10:59 ATLAS.root_0
[2025-12-16 13:09:50] -rw-r--r-- 2 boinc boinc    592392 Dec 16 10:59 input.tar.gz
[2025-12-16 13:09:50] -rw-r--r-- 2 boinc boinc     15847 Dec 16 10:59 start_atlas.sh
[2025-12-16 13:09:50] -rw------- 1 boinc boinc 149226309 Dec 16 13:08 HITS.pool.root.1
[2025-12-16 13:09:50] -rw------- 1 boinc boinc   1423360 Dec 16 13:09 result.tar.gz
13:09:52 (1699062): run_atlas exited; CPU time 15161.406748
13:09:52 (1699062): called boinc_finish(0)

</stderr_txt>
]]>

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