Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:48:14 (1988540): wrapper (7.7.26015): starting
12:48:14 (1988540): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 12:48:14] Arguments: --nthreads 4
[2025-12-16 12:48:14] Threads: 4
[2025-12-16 12:48:14] Checking for CVMFS
[2025-12-16 12:48:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 12:48:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 12:48:14] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 12:48:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 12:48:14] 2.9.2.0 382260 4383 94272 154069 1 57 25225653 36864001 0 130560 0 3449057 99.991 159128 17706 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-16 12:48:14] CVMFS is ok
[2025-12-16 12:48:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 12:48:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 12:48:14] Further information can be found at the LHC@home message board.
[2025-12-16 12:48:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 12:48:14] Checking for apptainer binary...
[2025-12-16 12:48:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 12:48:14] Running /usr/bin/apptainer --version
[2025-12-16 12:48:14] apptainer version 1.4.1-1.1
[2025-12-16 12:48:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 12:48:14] atlasA237
[2025-12-16 12:48:14] apptainer works
[2025-12-16 12:48:14] Set ATHENA_PROC_NUMBER=4
[2025-12-16 12:48:14] Set ATHENA_CORE_NUMBER=4
[2025-12-16 12:48:14] Starting ATLAS job with PandaID=6929784273
[2025-12-16 12:48:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 14:28:45]  *** The last 200 lines of the pilot log: ***
[2025-12-16 14:28:45] 2025-12-16 13:28:12,444 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 14:28:45] 2025-12-16 13:28:12,444 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 14:28:45] 2025-12-16 13:28:12,444 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 14:28:45] 2025-12-16 13:28:12,444 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 14:28:45] 2025-12-16 13:28:12,444 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 14:28:45] 2025-12-16 13:28:12,444 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 14:28:45] 2025-12-16 13:28:12,444 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 14:28:45] 2025-12-16 13:28:12,444 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 14:28:45] 2025-12-16 13:28:12,444 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 14:28:45] 2025-12-16 13:28:12,444 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 14:28:45] 2025-12-16 13:28:12,444 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 14:28:45] 2025-12-16 13:28:12,444 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 14:28:45] 2025-12-16 13:28:12,444 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 14:28:45] 2025-12-16 13:28:12,445 | INFO     | job 6929784273 has completed (purged errors)
[2025-12-16 14:28:45] 2025-12-16 13:28:12,445 | INFO     | overall cleanup function is called
[2025-12-16 14:28:45] 2025-12-16 13:28:13,448 | INFO     | --- collectZombieJob: --- 10, [1998948]
[2025-12-16 14:28:45] 2025-12-16 13:28:13,448 | INFO     | zombie collector waiting for pid 1998948
[2025-12-16 14:28:45] 2025-12-16 13:28:13,449 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 14:28:45] 2025-12-16 13:28:13,449 | INFO     | collected zombie processes
[2025-12-16 14:28:45] 2025-12-16 13:28:13,449 | INFO     | will attempt to kill all subprocesses of pid=1998948
[2025-12-16 14:28:45] 2025-12-16 13:28:13,512 | INFO     | process IDs to be killed: [1998948] (in reverse order)
[2025-12-16 14:28:45] 2025-12-16 13:28:13,550 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 14:28:45] 2025-12-16 13:28:13,550 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 14:28:45] 2025-12-16 13:28:13,553 | INFO     | did not find any defunct processes belonging to 1998948
[2025-12-16 14:28:45] 2025-12-16 13:28:13,555 | INFO     | did not find any defunct processes belonging to 1998948
[2025-12-16 14:28:45] 2025-12-16 13:28:13,555 | INFO     | ready for new job
[2025-12-16 14:28:45] 2025-12-16 13:28:13,555 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 14:28:45] 2025-12-16 13:28:13,556 | INFO     | ***************************************
[2025-12-16 14:28:45] 2025-12-16 13:28:13,556 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 14:28:45] 2025-12-16 13:28:13,556 | INFO     | ***************************************
[2025-12-16 14:28:45] 2025-12-16 13:28:13,556 | INFO     | 
[2025-12-16 14:28:45] 2025-12-16 13:28:13,556 | INFO     | architecture information:
[2025-12-16 14:28:45] 2025-12-16 13:28:13,556 | INFO     | executing command: cat /etc/os-release
[2025-12-16 14:28:45] 2025-12-16 13:28:13,569 | INFO     | cat /etc/os-release:
[2025-12-16 14:28:45] NAME="CentOS Linux"
[2025-12-16 14:28:45] VERSION="7 (Core)"
[2025-12-16 14:28:45] ID="centos"
[2025-12-16 14:28:45] ID_LIKE="rhel fedora"
[2025-12-16 14:28:45] VERSION_ID="7"
[2025-12-16 14:28:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 14:28:45] ANSI_COLOR="0;31"
[2025-12-16 14:28:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 14:28:45] HOME_URL="https://www.centos.org/"
[2025-12-16 14:28:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 14:28:45] 
[2025-12-16 14:28:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 14:28:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 14:28:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 14:28:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 14:28:45] 
[2025-12-16 14:28:45] 2025-12-16 13:28:13,569 | INFO     | ***************************************
[2025-12-16 14:28:45] 2025-12-16 13:28:14,073 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-16 14:28:45] 2025-12-16 13:28:14,089 | INFO     | sufficient remaining disk space (334274494464 B)
[2025-12-16 14:28:45] 2025-12-16 13:28:14,089 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 14:28:45] 2025-12-16 13:28:14,089 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 14:28:45] 2025-12-16 13:28:14,089 | INFO     | update_server=False
[2025-12-16 14:28:45] 2025-12-16 13:28:14,090 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 14:28:45] 2025-12-16 13:28:14,090 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 14:28:45] 2025-12-16 13:28:14,090 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 14:28:45] 2025-12-16 13:28:14,271 | INFO     | all payload control threads have been joined
[2025-12-16 14:28:45] 2025-12-16 13:28:14,293 | INFO     | all data control threads have been joined
[2025-12-16 14:28:45] 2025-12-16 13:28:14,712 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 14:28:45] 2025-12-16 13:28:14,712 | INFO     | aborting loop
[2025-12-16 14:28:45] 2025-12-16 13:28:15,095 | INFO     | [job] retrieve thread has finished
[2025-12-16 14:28:45] 2025-12-16 13:28:15,096 | INFO     | [job] queue monitor thread has finished
[2025-12-16 14:28:45] 2025-12-16 13:28:15,104 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 14:28:45] 2025-12-16 13:28:15,138 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 14:28:45] 2025-12-16 13:28:15,236 | INFO     | [data] copytool_in thread has finished
[2025-12-16 14:28:45] 2025-12-16 13:28:15,277 | INFO     | [payload] control thread has finished
[2025-12-16 14:28:45] 2025-12-16 13:28:15,299 | INFO     | [data] control thread has finished
[2025-12-16 14:28:45] 2025-12-16 13:28:15,330 | INFO     | [payload] validate_post thread has finished
[2025-12-16 14:28:45] 2025-12-16 13:28:15,706 | INFO     | [payload] failed_post thread has finished
[2025-12-16 14:28:45] 2025-12-16 13:28:15,718 | INFO     | [job] job monitor thread has finished
[2025-12-16 14:28:45] 2025-12-16 13:28:15,736 | INFO     | all job control threads have been joined
[2025-12-16 14:28:45] 2025-12-16 13:28:16,096 | INFO     | [data] copytool_out thread has finished
[2025-12-16 14:28:45] 2025-12-16 13:28:16,148 | INFO     | [job] validate thread has finished
[2025-12-16 14:28:45] 2025-12-16 13:28:16,232 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 14:28:45] 2025-12-16 13:28:16,301 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 14:28:45] 2025-12-16 13:28:16,334 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 14:28:45] 2025-12-16 13:28:16,741 | INFO     | [job] control thread has finished
[2025-12-16 14:28:45] 2025-12-16 13:28:19,111 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 14:28:45] 2025-12-16 13:28:28,891 | INFO     | [monitor] cgroup control has ended
[2025-12-16 14:28:45] 2025-12-16 13:28:29,087 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140368729634624)>', '<ExcThread(monitor, started 140367567509248)>']
[2025-12-16 14:28:45] 2025-12-16 13:28:34,091 | INFO     | all workflow threads have been joined
[2025-12-16 14:28:45] 2025-12-16 13:28:34,091 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 14:28:45] 2025-12-16 13:28:34,091 | INFO     | traces error code: 0
[2025-12-16 14:28:45] 2025-12-16 13:28:34,091 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 14:28:45] 2025-12-16 13:28:44,843 | INFO     | PID=1992345 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 14:28:45] 2025-12-16 13:28:44,843 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 14:28:45] 2025-12-16 13:28:44,843 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 14:28:45] 2025-12-16 13:28:44,843 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 14:28:45] 2025-12-16 13:28:44,843 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 14:28:45] 2025-12-16 13:28:44,843 | INFO     | [monitor] control thread has ended
[2025-12-16 14:28:45] 2025-12-16 13:28:44,911 [wrapper] ==== pilot stdout END ====
[2025-12-16 14:28:45] 2025-12-16 13:28:44,915 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 14:28:45] 2025-12-16 13:28:44,919 [wrapper] pilotpid: 1992345
[2025-12-16 14:28:45] 2025-12-16 13:28:44,923 [wrapper] Pilot exit status: 0
[2025-12-16 14:28:45] 2025-12-16 13:28:44,934 [wrapper] pandaids: 6929784273
[2025-12-16 14:28:45] 2025-12-16 13:28:44,959 [wrapper] cleanup supervisor_pilot 2017066 1992346
[2025-12-16 14:28:45] 2025-12-16 13:28:44,962 [wrapper] Test setup, not cleaning
[2025-12-16 14:28:45] 2025-12-16 13:28:44,966 [wrapper] apfmon messages muted
[2025-12-16 14:28:45] 2025-12-16 13:28:44,970 [wrapper] ==== wrapper stdout END ====
[2025-12-16 14:28:45] 2025-12-16 13:28:44,973 [wrapper] ==== wrapper stderr END ====
[2025-12-16 14:28:45]  *** Error codes and diagnostics ***
[2025-12-16 14:28:45]     "exeErrorCode": 0,
[2025-12-16 14:28:45]     "exeErrorDiag": "",
[2025-12-16 14:28:45]     "pilotErrorCode": 0,
[2025-12-16 14:28:45]     "pilotErrorDiag": "",
[2025-12-16 14:28:45]  *** Listing of results directory ***
[2025-12-16 14:28:45] total 439184
[2025-12-16 14:28:45] -rw-r--r-- 1 boinc boinc    579449 Dec 15 14:27 pilot3.tar.gz
[2025-12-16 14:28:45] -rwx------ 1 boinc boinc     36322 Dec 15 14:27 runpilot2-wrapper.sh
[2025-12-16 14:28:45] -rw-r--r-- 1 boinc boinc      5112 Dec 15 14:27 queuedata.json
[2025-12-16 14:28:45] -rw-r--r-- 1 boinc boinc       100 Dec 16 12:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 14:28:45] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 12:48 run_atlas
[2025-12-16 14:28:45] -rw-r--r-- 1 boinc boinc       105 Dec 16 12:48 job.xml
[2025-12-16 14:28:45] -rw-r--r-- 2 boinc boinc 224349303 Dec 16 12:48 EVNT.47898761._000687.pool.root.1
[2025-12-16 14:28:45] -rw-r--r-- 2 boinc boinc    592396 Dec 16 12:48 input.tar.gz
[2025-12-16 14:28:45] -rw-r--r-- 2 boinc boinc     15847 Dec 16 12:48 start_atlas.sh
[2025-12-16 14:28:45] drwxrwx--x 2 boinc boinc      4096 Dec 16 12:48 shared
[2025-12-16 14:28:45] -rw-r--r-- 1 boinc boinc         0 Dec 16 12:48 boinc_setup_complete
[2025-12-16 14:28:45] -rw-r--r-- 1 boinc boinc      6372 Dec 16 12:48 init_data.xml
[2025-12-16 14:28:45] -rw-r--r-- 1 boinc boinc         0 Dec 16 12:48 boinc_lockfile
[2025-12-16 14:28:45] -rw-r--r-- 1 boinc boinc      2508 Dec 16 12:48 pandaJob.out
[2025-12-16 14:28:45] -rw------- 1 boinc boinc    991017 Dec 16 12:48 agis_schedconf.cvmfs.json
[2025-12-16 14:28:45] -rw------- 1 boinc boinc   1516240 Dec 16 12:48 agis_ddmendpoints.agis.ALL.json
[2025-12-16 14:28:45] drwx------ 5 boinc boinc      4096 Dec 16 12:48 pilot3
[2025-12-16 14:28:45] -rw------- 1 boinc boinc 219157722 Dec 16 14:27 HITS.47898763._017199.pool.root.1
[2025-12-16 14:28:45] -rw-r--r-- 1 boinc boinc       529 Dec 16 14:27 boinc_task_state.xml
[2025-12-16 14:28:45] -rw------- 1 boinc boinc        95 Dec 16 14:28 pilot_heartbeat.json
[2025-12-16 14:28:45] -rw------- 1 boinc boinc      1022 Dec 16 14:28 memory_monitor_summary.json
[2025-12-16 14:28:45] -rw------- 1 boinc boinc    292247 Dec 16 14:28 log.47898763._017199.job.log.tgz.1
[2025-12-16 14:28:45] -rw------- 1 boinc boinc      7764 Dec 16 14:28 heartbeat.json
[2025-12-16 14:28:45] -rw-r--r-- 1 boinc boinc      8192 Dec 16 14:28 boinc_mmap_file
[2025-12-16 14:28:45] -rw-r--r-- 1 boinc boinc        27 Dec 16 14:28 wrapper_checkpoint.txt
[2025-12-16 14:28:45] -rw------- 1 boinc boinc       747 Dec 16 14:28 pilotlog.txt
[2025-12-16 14:28:45] -rw------- 1 boinc boinc    867233 Dec 16 14:28 log.47898763._017199.job.log.1
[2025-12-16 14:28:45] -rw------- 1 boinc boinc       357 Dec 16 14:28 output.list
[2025-12-16 14:28:45] -rw-r--r-- 1 boinc boinc       620 Dec 16 14:28 runtime_log
[2025-12-16 14:28:45] -rw------- 1 boinc boinc   1177600 Dec 16 14:28 result.tar.gz
[2025-12-16 14:28:45] -rw-r--r-- 1 boinc boinc      8912 Dec 16 14:28 runtime_log.err
[2025-12-16 14:28:45] -rw------- 1 boinc boinc       662 Dec 16 14:28 nlINDm2mNp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDme2XKDmFC18Eo.diag
[2025-12-16 14:28:45] -rw-r--r-- 1 boinc boinc     12144 Dec 16 14:28 stderr.txt
[2025-12-16 14:28:45] HITS file was successfully produced:
[2025-12-16 14:28:45] -rw------- 1 boinc boinc 219157722 Dec 16 14:27 shared/HITS.pool.root.1
[2025-12-16 14:28:45]  *** Contents of shared directory: ***
[2025-12-16 14:28:45] total 434872
[2025-12-16 14:28:45] -rw-r--r-- 2 boinc boinc 224349303 Dec 16 12:48 ATLAS.root_0
[2025-12-16 14:28:45] -rw-r--r-- 2 boinc boinc    592396 Dec 16 12:48 input.tar.gz
[2025-12-16 14:28:45] -rw-r--r-- 2 boinc boinc     15847 Dec 16 12:48 start_atlas.sh
[2025-12-16 14:28:45] -rw------- 1 boinc boinc 219157722 Dec 16 14:27 HITS.pool.root.1
[2025-12-16 14:28:45] -rw------- 1 boinc boinc   1177600 Dec 16 14:28 result.tar.gz
14:28:46 (1988540): run_atlas exited; CPU time 22955.817131
14:28:46 (1988540): called boinc_finish(0)

</stderr_txt>
]]>

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