Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:50:32 (1087950): wrapper (7.7.26015): starting
10:50:32 (1087950): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 10:50:32] Arguments: --nthreads 4
[2025-12-16 10:50:32] Threads: 4
[2025-12-16 10:50:32] Checking for CVMFS
[2025-12-16 10:50:32] No cvmfs_config command found, will try listing directly
[2025-12-16 10:50:32] CVMFS is ok
[2025-12-16 10:50:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 10:50:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 10:50:32] Further information can be found at the LHC@home message board.
[2025-12-16 10:50:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 10:50:32] Checking for apptainer binary...
[2025-12-16 10:50:32] which: no apptainer in ((null))
[2025-12-16 10:50:32] apptainer is not installed, using version from CVMFS
[2025-12-16 10:50:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 10:50:32] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2025-12-16 10:50:32] apptainer works
[2025-12-16 10:50:32] Set ATHENA_PROC_NUMBER=4
[2025-12-16 10:50:32] Set ATHENA_CORE_NUMBER=4
[2025-12-16 10:50:32] Starting ATLAS job with PandaID=6929508348
[2025-12-16 10:50:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 14:05:27]  *** The last 200 lines of the pilot log: ***
[2025-12-16 14:05:27] 2025-12-16 12:59:11,476 | INFO     | executing command: lscpu
[2025-12-16 14:05:27] 2025-12-16 12:59:11,531 | INFO     | time since job start (11307s) is within the limit (174528.0s)
[2025-12-16 14:05:27] 2025-12-16 12:59:11,536 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 14:05:27] 2025-12-16 12:59:11,581 | INFO     | monitor loop #817: job 0:6929508348 is in state 'finished'
[2025-12-16 14:05:27] 2025-12-16 12:59:11,581 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 14:05:27] 2025-12-16 12:59:13,537 | INFO     | time since job start (11309s) is within the limit (174528.0s)
[2025-12-16 14:05:27] 2025-12-16 12:59:14,087 | INFO     | monitor loop #818: job 0:6929508348 is in state 'finished'
[2025-12-16 14:05:27] 2025-12-16 12:59:14,087 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 14:05:27] 2025-12-16 12:59:15,544 | INFO     | time since job start (11311s) is within the limit (174528.0s)
[2025-12-16 14:05:27] 2025-12-16 12:59:16,284 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-16 14:05:27] 2025-12-16 12:59:16,296 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2605.3965625
[2025-12-16 14:05:27] 2025-12-16 12:59:16,310 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6929508348/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 14:05:27] 2025-12-16 12:59:16,311 | INFO     | extracted standard info from prmon json
[2025-12-16 14:05:27] 2025-12-16 12:59:16,311 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 14:05:27] 2025-12-16 12:59:16,311 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 14:05:27] 2025-12-16 12:59:16,311 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 14:05:27] 2025-12-16 12:59:16,312 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 14:05:27] 2025-12-16 12:59:16,316 | INFO     | fitting pss+swap vs Time
[2025-12-16 14:05:27] 2025-12-16 12:59:16,316 | INFO     | sum of square deviations: 1963274020.0
[2025-12-16 14:05:27] 2025-12-16 12:59:16,317 | INFO     | sum of deviations: 8039730276.999999
[2025-12-16 14:05:27] 2025-12-16 12:59:16,318 | INFO     | mean x: 1765884283.0
[2025-12-16 14:05:27] 2025-12-16 12:59:16,318 | INFO     | mean y: 2329472.621621622
[2025-12-16 14:05:27] 2025-12-16 12:59:16,318 | INFO     | intersect: -7229077448.208275
[2025-12-16 14:05:27] 2025-12-16 12:59:16,318 | INFO     | chi2: 1.324150232881044
[2025-12-16 14:05:27] 2025-12-16 12:59:16,319 | INFO     | sum of square deviations: 1808350185.0
[2025-12-16 14:05:27] 2025-12-16 12:59:16,320 | INFO     | sum of deviations: 7813362845.50001
[2025-12-16 14:05:27] 2025-12-16 12:59:16,320 | INFO     | mean x: 1765884130.5
[2025-12-16 14:05:27] 2025-12-16 12:59:16,320 | INFO     | mean y: 2329249.7277777777
[2025-12-16 14:05:27] 2025-12-16 12:59:16,320 | INFO     | intersect: -7627549945.770406
[2025-12-16 14:05:27] 2025-12-16 12:59:16,320 | INFO     | chi2: 1.324853878938109
[2025-12-16 14:05:27] 2025-12-16 12:59:16,320 | INFO     | current chi2=1.324853878938109 (change=-0.05313944291155743 %)
[2025-12-16 14:05:27] 2025-12-16 12:59:16,321 | INFO     | right removable region: 179
[2025-12-16 14:05:27] 2025-12-16 12:59:16,321 | INFO     | sum of square deviations: 1808350185.0
[2025-12-16 14:05:27] 2025-12-16 12:59:16,322 | INFO     | sum of deviations: -13060034516.5
[2025-12-16 14:05:27] 2025-12-16 12:59:16,322 | INFO     | mean x: 1765884435.5
[2025-12-16 14:05:27] 2025-12-16 12:59:16,322 | INFO     | mean y: 2349906.261111111
[2025-12-16 14:05:27] 2025-12-16 12:59:16,322 | INFO     | intersect: 12755693739.264404
[2025-12-16 14:05:27] 2025-12-16 12:59:16,323 | INFO     | chi2: 0.06289365027643384
[2025-12-16 14:05:27] 2025-12-16 12:59:16,323 | INFO     | current chi2=0.06289365027643384 (change=95.25026324697373 %)
[2025-12-16 14:05:27] 2025-12-16 12:59:16,323 | INFO     | sum of square deviations: 1661798600.0
[2025-12-16 14:05:27] 2025-12-16 12:59:16,324 | INFO     | sum of deviations: -9105407902.0
[2025-12-16 14:05:27] 2025-12-16 12:59:16,324 | INFO     | mean x: 1765884588.0
[2025-12-16 14:05:27] 2025-12-16 12:59:16,324 | INFO     | mean y: 2345785.9542857143
[2025-12-16 14:05:27] 2025-12-16 12:59:16,325 | INFO     | intersect: 9678066707.60822
[2025-12-16 14:05:27] 2025-12-16 12:59:16,325 | INFO     | chi2: 0.05220298478459145
[2025-12-16 14:05:27] 2025-12-16 12:59:16,325 | INFO     | current chi2=0.05220298478459145 (change=16.998004480347632 %)
[2025-12-16 14:05:27] 2025-12-16 12:59:16,325 | INFO     | left removable region: 20
[2025-12-16 14:05:27] 2025-12-16 12:59:16,325 | INFO     | sum of square deviations: 1246386160.0
[2025-12-16 14:05:27] 2025-12-16 12:59:16,326 | INFO     | sum of deviations: 274902600.0000009
[2025-12-16 14:05:27] 2025-12-16 12:59:16,326 | INFO     | mean x: 1765884710.0
[2025-12-16 14:05:27] 2025-12-16 12:59:16,326 | INFO     | mean y: 2334947.327044025
[2025-12-16 14:05:27] 2025-12-16 12:59:16,327 | INFO     | intersect: -387148114.71148795
[2025-12-16 14:05:27] 2025-12-16 12:59:16,327 | INFO     | chi2: 0.0017320623804070784
[2025-12-16 14:05:27] 2025-12-16 12:59:16,327 | INFO     | current memory leak: 0.22 B/s (using 159 data points, chi2=0.00)
[2025-12-16 14:05:27] 2025-12-16 12:59:16,328 | INFO     | could have reported an average CPU frequency of 2585 MHz (10 samples)
[2025-12-16 14:05:27] 2025-12-16 12:59:16,328 | INFO     | ..............................
[2025-12-16 14:05:27] 2025-12-16 12:59:16,328 | INFO     | . Timing measurements:
[2025-12-16 14:05:27] 2025-12-16 12:59:16,328 | INFO     | . get job = 0 s
[2025-12-16 14:05:27] 2025-12-16 12:59:16,328 | INFO     | . initial setup = 1 s
[2025-12-16 14:05:27] 2025-12-16 12:59:16,328 | INFO     | . payload setup = 6 s
[2025-12-16 14:05:27] 2025-12-16 12:59:16,328 | INFO     | . stage-in = 0 s
[2025-12-16 14:05:27] 2025-12-16 12:59:16,328 | INFO     | . payload execution = 11274 s
[2025-12-16 14:05:27] 2025-12-16 12:59:16,328 | INFO     | . stage-out = 1 s
[2025-12-16 14:05:27] 2025-12-16 12:59:16,328 | INFO     | . log creation = 0 s
[2025-12-16 14:05:27] 2025-12-16 12:59:16,329 | INFO     | ..............................
[2025-12-16 14:05:27] 2025-12-16 12:59:16,432 | INFO     | 
[2025-12-16 14:05:27] 2025-12-16 12:59:16,432 | INFO     | job summary report
[2025-12-16 14:05:27] 2025-12-16 12:59:16,433 | INFO     | --------------------------------------------------
[2025-12-16 14:05:27] 2025-12-16 12:59:16,433 | INFO     | PanDA job id: 6929508348
[2025-12-16 14:05:27] 2025-12-16 12:59:16,433 | INFO     | task id: 47886933
[2025-12-16 14:05:27] 2025-12-16 12:59:16,433 | INFO     | errors: (none)
[2025-12-16 14:05:27] 2025-12-16 12:59:16,433 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 14:05:27] 2025-12-16 12:59:16,433 | INFO     | pilot state: finished 
[2025-12-16 14:05:27] 2025-12-16 12:59:16,433 | INFO     | transexitcode: 0
[2025-12-16 14:05:27] 2025-12-16 12:59:16,433 | INFO     | exeerrorcode: 0
[2025-12-16 14:05:27] 2025-12-16 12:59:16,433 | INFO     | exeerrordiag: 
[2025-12-16 14:05:27] 2025-12-16 12:59:16,433 | INFO     | exitcode: 0
[2025-12-16 14:05:27] 2025-12-16 12:59:16,433 | INFO     | exitmsg: OK
[2025-12-16 14:05:27] 2025-12-16 12:59:16,433 | INFO     | cpuconsumptiontime: 43225 s
[2025-12-16 14:05:27] 2025-12-16 12:59:16,434 | INFO     | nevents: 400
[2025-12-16 14:05:27] 2025-12-16 12:59:16,434 | INFO     | neventsw: 0
[2025-12-16 14:05:27] 2025-12-16 12:59:16,434 | INFO     | pid: 1110835
[2025-12-16 14:05:27] 2025-12-16 12:59:16,434 | INFO     | pgrp: 1110835
[2025-12-16 14:05:27] 2025-12-16 12:59:16,434 | INFO     | corecount: 4
[2025-12-16 14:05:27] 2025-12-16 12:59:16,434 | INFO     | event service: False
[2025-12-16 14:05:27] 2025-12-16 12:59:16,434 | INFO     | sizes: {0: 2283976, 5: 2284238, 11: 2284294, 11284: 2313591, 11285: 2313590, 11287: 2322666, 11289: 2322850, 11296: 2323044}
[2025-12-16 14:05:27] 2025-12-16 12:59:16,434 | INFO     | --------------------------------------------------
[2025-12-16 14:05:27] 2025-12-16 12:59:16,434 | INFO     | 
[2025-12-16 14:05:27] 2025-12-16 12:59:16,434 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2025-12-16 14:05:27] 2025-12-16 12:59:16,456 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 14:05:27] 2025-12-16 12:59:16,456 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 14:05:27] 2025-12-16 12:59:16,456 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 14:05:27] 2025-12-16 12:59:16,457 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 14:05:27] 2025-12-16 12:59:16,457 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 14:05:27] 2025-12-16 12:59:16,457 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 14:05:27] 2025-12-16 12:59:16,457 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 14:05:27] 2025-12-16 12:59:16,457 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 14:05:27] 2025-12-16 12:59:16,457 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 14:05:27] 2025-12-16 12:59:16,457 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 14:05:27] 2025-12-16 12:59:16,457 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 14:05:27] 2025-12-16 12:59:16,457 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 14:05:27] 2025-12-16 12:59:16,457 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 14:05:27] 2025-12-16 12:59:16,457 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 14:05:27] 2025-12-16 12:59:16,457 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 14:05:27] 2025-12-16 12:59:16,458 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 14:05:27] 2025-12-16 12:59:16,458 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 14:05:27] 2025-12-16 12:59:16,458 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 14:05:27] 2025-12-16 12:59:16,458 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 14:05:27] 2025-12-16 12:59:16,458 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 14:05:27] 2025-12-16 12:59:16,458 | INFO     | job 6929508348 has completed (purged errors)
[2025-12-16 14:05:27] 2025-12-16 12:59:16,458 | INFO     | overall cleanup function is called
[2025-12-16 14:05:27] 2025-12-16 12:59:17,465 | INFO     | --- collectZombieJob: --- 10, [1110835]
[2025-12-16 14:05:27] 2025-12-16 12:59:17,466 | INFO     | zombie collector waiting for pid 1110835
[2025-12-16 14:05:27] 2025-12-16 12:59:17,466 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 14:05:27] 2025-12-16 12:59:17,466 | INFO     | collected zombie processes
[2025-12-16 14:05:27] 2025-12-16 12:59:17,466 | INFO     | will attempt to kill all subprocesses of pid=1110835
[2025-12-16 14:05:27] 2025-12-16 12:59:17,845 | INFO     | process IDs to be killed: [1110835] (in reverse order)
[2025-12-16 14:05:27] 2025-12-16 12:59:17,985 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 14:05:27] 2025-12-16 12:59:17,985 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 14:05:27] 2025-12-16 12:59:17,998 | INFO     | did not find any defunct processes belonging to 1110835
[2025-12-16 14:05:27] 2025-12-16 12:59:18,010 | INFO     | did not find any defunct processes belonging to 1110835
[2025-12-16 14:05:27] 2025-12-16 12:59:18,010 | INFO     | ready for new job
[2025-12-16 14:05:27] 2025-12-16 12:59:18,010 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 14:05:27] 2025-12-16 12:59:18,012 | INFO     | ***************************************
[2025-12-16 14:05:27] 2025-12-16 12:59:18,012 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 14:05:27] 2025-12-16 12:59:18,013 | INFO     | ***************************************
[2025-12-16 14:05:27] 2025-12-16 12:59:18,013 | INFO     | 
[2025-12-16 14:05:27] 2025-12-16 12:59:18,016 | INFO     | architecture information:
[2025-12-16 14:05:27] 2025-12-16 12:59:18,017 | INFO     | executing command: cat /etc/os-release
[2025-12-16 14:05:27] 2025-12-16 12:59:18,032 | INFO     | cat /etc/os-release:
[2025-12-16 14:05:27] NAME="CentOS Linux"
[2025-12-16 14:05:27] VERSION="7 (Core)"
[2025-12-16 14:05:27] ID="centos"
[2025-12-16 14:05:27] ID_LIKE="rhel fedora"
[2025-12-16 14:05:27] VERSION_ID="7"
[2025-12-16 14:05:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 14:05:27] ANSI_COLOR="0;31"
[2025-12-16 14:05:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 14:05:27] HOME_URL="https://www.centos.org/"
[2025-12-16 14:05:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 14:05:27] 
[2025-12-16 14:05:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 14:05:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 14:05:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 14:05:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 14:05:27] 
[2025-12-16 14:05:27] 2025-12-16 12:59:18,032 | INFO     | ***************************************
[2025-12-16 14:05:27] 2025-12-16 12:59:18,535 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2025-12-16 14:05:27] 2025-12-16 12:59:18,553 | INFO     | sufficient remaining disk space (632251482112 B)
[2025-12-16 14:05:27] 2025-12-16 12:59:18,553 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 14:05:27] 2025-12-16 12:59:18,553 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 14:05:27] 2025-12-16 12:59:18,554 | INFO     | update_server=False
[2025-12-16 14:05:27] 2025-12-16 12:59:18,554 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 14:05:27] 2025-12-16 12:59:18,554 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 14:05:27] 2025-12-16 12:59:18,554 | INFO     | aborting loop
[2025-12-16 14:05:27] 2025-12-16 12:59:18,554 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 14:05:27] 2025-12-16 12:59:18,805 | INFO     | all data control threads have been joined
[2025-12-16 14:05:27] 2025-12-16 12:59:18,835 | INFO     | all payload control threads have been joined
[2025-12-16 14:05:27] 2025-12-16 12:59:19,493 | INFO     | all job control threads have been joined
[2025-12-16 14:05:27] 2025-12-16 12:59:19,560 | INFO     | [job] retrieve thread has finished
[2025-12-16 14:05:27] 2025-12-16 12:59:19,561 | INFO     | [job] job monitor thread has finished
[2025-12-16 14:05:27] 2025-12-16 12:59:19,591 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 14:05:27] 2025-12-16 12:59:19,811 | INFO     | [data] control thread has finished
[2025-12-16 14:05:27] 2025-12-16 12:59:19,841 | INFO     | [payload] control thread has finished
[2025-12-16 14:05:27] 2025-12-16 12:59:20,229 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 14:05:27] 2025-12-16 12:59:20,402 | INFO     | [data] copytool_in thread has finished
[2025-12-16 14:05:27] 2025-12-16 12:59:20,498 | INFO     | [job] control thread has finished
[2025-12-16 14:05:27] 2025-12-16 12:59:20,556 | INFO     | [data] copytool_out thread has finished
[2025-12-16 14:05:27] 2025-12-16 12:59:20,567 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 14:05:27] 2025-12-16 12:59:20,719 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 14:05:27] 2025-12-16 12:59:20,719 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 14:05:27] 2025-12-16 12:59:20,897 | INFO     | [job] validate thread has finished
[2025-12-16 14:05:27] 2025-12-16 12:59:21,002 | INFO     | [payload] validate_post thread has finished
[2025-12-16 14:05:27] 2025-12-16 12:59:21,009 | INFO     | [payload] failed_post thread has finished
[2025-12-16 14:05:27] 2025-12-16 12:59:21,441 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 14:05:27] 2025-12-16 12:59:22,447 | INFO     | [job] queue monitor thread has finished
[2025-12-16 14:05:27] 2025-12-16 12:59:24,235 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 14:05:27] 2025-12-16 12:59:49,152 | INFO     | PID=1092768 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 14:05:27] 2025-12-16 12:59:49,152 | INFO     | .. there are 5 such processes running
[2025-12-16 14:05:27] 2025-12-16 12:59:49,152 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 14:05:27] 2025-12-16 12:59:49,152 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 14:05:27] 2025-12-16 12:59:49,152 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 14:05:27] 2025-12-16 13:00:02,395 | INFO     | [monitor] cgroup control has ended
[2025-12-16 14:05:27] 2025-12-16 13:00:04,464 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22603495483200)>', '<ExcThread(monitor, started 22603255215872)>']
[2025-12-16 14:05:27] 2025-12-16 13:00:05,230 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 14:05:27] 2025-12-16 13:00:05,230 | INFO     | [monitor] control thread has ended
[2025-12-16 14:05:27] 2025-12-16 13:00:09,488 | INFO     | all workflow threads have been joined
[2025-12-16 14:05:27] 2025-12-16 13:00:09,489 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 14:05:27] 2025-12-16 13:00:09,489 | INFO     | traces error code: 0
[2025-12-16 14:05:27] 2025-12-16 13:00:09,489 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 14:05:27] 2025-12-16 13:00:09,669 [wrapper] ==== pilot stdout END ====
[2025-12-16 14:05:27] 2025-12-16 13:00:09,672 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 14:05:27] 2025-12-16 13:00:09,675 [wrapper] pilotpid: 1092768
[2025-12-16 14:05:27] 2025-12-16 13:00:09,678 [wrapper] Pilot exit status: 0
[2025-12-16 14:05:27] 2025-12-16 13:00:09,690 [wrapper] pandaids: 6929508348
[2025-12-16 14:05:27] 2025-12-16 13:00:09,768 [wrapper] cleanup supervisor_pilot 1274566 1092769
[2025-12-16 14:05:27] 2025-12-16 13:00:09,771 [wrapper] Test setup, not cleaning
[2025-12-16 14:05:27] 2025-12-16 13:00:09,774 [wrapper] apfmon messages muted
[2025-12-16 14:05:27] 2025-12-16 13:00:09,776 [wrapper] ==== wrapper stdout END ====
[2025-12-16 14:05:27] 2025-12-16 13:00:09,779 [wrapper] ==== wrapper stderr END ====
[2025-12-16 14:05:27]  *** Error codes and diagnostics ***
[2025-12-16 14:05:27]     "exeErrorCode": 0,
[2025-12-16 14:05:27]     "exeErrorDiag": "",
[2025-12-16 14:05:27]     "pilotErrorCode": 0,
[2025-12-16 14:05:27]     "pilotErrorDiag": "",
[2025-12-16 14:05:27]  *** Listing of results directory ***
[2025-12-16 14:05:27] total 331440
[2025-12-16 14:05:27] -rw-r--r-- 1 boinc boinc    579449 Dec 15 00:13 pilot3.tar.gz
[2025-12-16 14:05:27] -rwx------ 1 boinc boinc     36322 Dec 15 00:16 runpilot2-wrapper.sh
[2025-12-16 14:05:27] -rw-r--r-- 1 boinc boinc      5112 Dec 15 00:18 queuedata.json
[2025-12-16 14:05:27] -rw-r--r-- 1 boinc boinc       100 Dec 16 10:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 14:05:27] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 10:50 run_atlas
[2025-12-16 14:05:27] -rw-r--r-- 1 boinc boinc       105 Dec 16 10:50 job.xml
[2025-12-16 14:05:27] -rw-r--r-- 1 boinc boinc      6638 Dec 16 10:50 init_data.xml
[2025-12-16 14:05:27] -rw-r--r-- 2 boinc boinc 190159376 Dec 16 10:50 EVNT.47886929._000221.pool.root.1
[2025-12-16 14:05:27] -rw-r--r-- 2 boinc boinc     15847 Dec 16 10:50 start_atlas.sh
[2025-12-16 14:05:27] drwxrwx--x 2 boinc boinc      4096 Dec 16 10:50 shared
[2025-12-16 14:05:27] -rw-r--r-- 2 boinc boinc    592398 Dec 16 10:50 input.tar.gz
[2025-12-16 14:05:27] -rw-r--r-- 1 boinc boinc         0 Dec 16 10:50 boinc_lockfile
[2025-12-16 14:05:27] -rw-r--r-- 1 boinc boinc      2513 Dec 16 10:50 pandaJob.out
[2025-12-16 14:05:27] -rw------- 1 boinc boinc    994525 Dec 16 10:50 agis_schedconf.cvmfs.json
[2025-12-16 14:05:27] drwx------ 5 boinc boinc      4096 Dec 16 10:50 pilot3
[2025-12-16 14:05:27] -rw------- 1 boinc boinc 141393991 Dec 16 13:58 HITS.47886933._004627.pool.root.1
[2025-12-16 14:05:27] -rw-r--r-- 1 boinc boinc       528 Dec 16 13:58 boinc_task_state.xml
[2025-12-16 14:05:27] -rw------- 1 boinc boinc        95 Dec 16 13:58 pilot_heartbeat.json
[2025-12-16 14:05:27] -rw------- 1 boinc boinc      1030 Dec 16 13:59 memory_monitor_summary.json
[2025-12-16 14:05:27] -rw------- 1 boinc boinc   1516240 Dec 16 13:59 agis_ddmendpoints.agis.ALL.json
[2025-12-16 14:05:27] -rw------- 1 boinc boinc    357401 Dec 16 13:59 log.47886933._004627.job.log.tgz.1
[2025-12-16 14:05:27] -rw------- 1 boinc boinc      7832 Dec 16 13:59 heartbeat.json
[2025-12-16 14:05:27] -rw------- 1 boinc boinc      4833 Dec 16 14:00 pilotlog.txt
[2025-12-16 14:05:27] -rw------- 1 boinc boinc   1602627 Dec 16 14:00 log.47886933._004627.job.log.1
[2025-12-16 14:05:27] -rw------- 1 boinc boinc       357 Dec 16 14:00 output.list
[2025-12-16 14:05:27] -rw-r--r-- 1 boinc boinc       620 Dec 16 14:00 runtime_log
[2025-12-16 14:05:27] -rw------- 1 boinc boinc   1976320 Dec 16 14:00 result.tar.gz
[2025-12-16 14:05:27] -rw-r--r-- 1 boinc boinc      9206 Dec 16 14:00 runtime_log.err
[2025-12-16 14:05:27] -rw------- 1 boinc boinc       665 Dec 16 14:00 FhMNDmuVAp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSfWKDmdFObjn.diag
[2025-12-16 14:05:27] -rw-r--r-- 1 boinc boinc        27 Dec 16 14:05 wrapper_checkpoint.txt
[2025-12-16 14:05:27] -rw-r--r-- 1 boinc boinc      8192 Dec 16 14:05 boinc_mmap_file
[2025-12-16 14:05:27] -rw-r--r-- 1 boinc boinc     21180 Dec 16 14:05 stderr.txt
[2025-12-16 14:05:27] HITS file was successfully produced:
[2025-12-16 14:05:27] -rw------- 1 boinc boinc 141393991 Dec 16 13:58 shared/HITS.pool.root.1
[2025-12-16 14:05:27]  *** Contents of shared directory: ***
[2025-12-16 14:05:27] total 326324
[2025-12-16 14:05:27] -rw-r--r-- 2 boinc boinc 190159376 Dec 16 10:50 ATLAS.root_0
[2025-12-16 14:05:27] -rw-r--r-- 2 boinc boinc     15847 Dec 16 10:50 start_atlas.sh
[2025-12-16 14:05:27] -rw-r--r-- 2 boinc boinc    592398 Dec 16 10:50 input.tar.gz
[2025-12-16 14:05:27] -rw------- 1 boinc boinc 141393991 Dec 16 13:58 HITS.pool.root.1
[2025-12-16 14:05:27] -rw------- 1 boinc boinc   1976320 Dec 16 14:00 result.tar.gz
14:05:29 (1087950): run_atlas exited; CPU time 43735.033755
14:05:29 (1087950): called boinc_finish(0)

</stderr_txt>
]]>

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