Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:56:32 (770310): wrapper (7.7.26015): starting
08:56:32 (770310): wrapper: running run_atlas (--nthreads 3)
[2025-12-16 08:56:32] Arguments: --nthreads 3
[2025-12-16 08:56:32] Threads: 3
[2025-12-16 08:56:32] Checking for CVMFS
[2025-12-16 08:56:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 08:56:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 08:56:32] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 08:56:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 08:56:32] 2.9.2.0 3832690 4391 83672 154063 1 57 19701901 36864001 0 130560 0 2983330 99.990 155888 12742 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-16 08:56:32] CVMFS is ok
[2025-12-16 08:56:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 08:56:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 08:56:32] Further information can be found at the LHC@home message board.
[2025-12-16 08:56:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 08:56:32] Checking for apptainer binary...
[2025-12-16 08:56:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 08:56:32] Running /usr/bin/apptainer --version
[2025-12-16 08:56:32] apptainer version 1.4.1-1.1
[2025-12-16 08:56:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 08:56:32] thA337a
[2025-12-16 08:56:32] apptainer works
[2025-12-16 08:56:32] Set ATHENA_PROC_NUMBER=3
[2025-12-16 08:56:32] Set ATHENA_CORE_NUMBER=3
[2025-12-16 08:56:32] Starting ATLAS job with PandaID=6929804646
[2025-12-16 08:56:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 10:49:52]  *** The last 200 lines of the pilot log: ***
[2025-12-16 10:49:52] 2025-12-16 09:49:06,534 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 10:49:52] 2025-12-16 09:49:06,534 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 10:49:52] 2025-12-16 09:49:06,534 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 10:49:52] 2025-12-16 09:49:06,534 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 10:49:52] 2025-12-16 09:49:06,534 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 10:49:52] 2025-12-16 09:49:06,534 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 10:49:52] 2025-12-16 09:49:06,534 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 10:49:52] 2025-12-16 09:49:06,534 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 10:49:52] 2025-12-16 09:49:06,534 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 10:49:52] 2025-12-16 09:49:06,534 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 10:49:52] 2025-12-16 09:49:06,534 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 10:49:52] 2025-12-16 09:49:06,534 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 10:49:52] 2025-12-16 09:49:06,534 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 10:49:52] 2025-12-16 09:49:06,534 | INFO     | job 6929804646 has completed (purged errors)
[2025-12-16 10:49:52] 2025-12-16 09:49:06,535 | INFO     | overall cleanup function is called
[2025-12-16 10:49:52] 2025-12-16 09:49:07,541 | INFO     | --- collectZombieJob: --- 10, [780485]
[2025-12-16 10:49:52] 2025-12-16 09:49:07,541 | INFO     | zombie collector waiting for pid 780485
[2025-12-16 10:49:52] 2025-12-16 09:49:07,542 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 10:49:52] 2025-12-16 09:49:07,542 | INFO     | collected zombie processes
[2025-12-16 10:49:52] 2025-12-16 09:49:07,542 | INFO     | will attempt to kill all subprocesses of pid=780485
[2025-12-16 10:49:52] 2025-12-16 09:49:07,591 | INFO     | process IDs to be killed: [780485] (in reverse order)
[2025-12-16 10:49:52] 2025-12-16 09:49:07,616 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 10:49:52] 2025-12-16 09:49:07,616 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 10:49:52] 2025-12-16 09:49:07,618 | INFO     | did not find any defunct processes belonging to 780485
[2025-12-16 10:49:52] 2025-12-16 09:49:07,619 | INFO     | did not find any defunct processes belonging to 780485
[2025-12-16 10:49:52] 2025-12-16 09:49:07,619 | INFO     | ready for new job
[2025-12-16 10:49:52] 2025-12-16 09:49:07,619 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 10:49:52] 2025-12-16 09:49:07,620 | INFO     | ***************************************
[2025-12-16 10:49:52] 2025-12-16 09:49:07,620 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 10:49:52] 2025-12-16 09:49:07,620 | INFO     | ***************************************
[2025-12-16 10:49:52] 2025-12-16 09:49:07,620 | INFO     | 
[2025-12-16 10:49:52] 2025-12-16 09:49:07,620 | INFO     | architecture information:
[2025-12-16 10:49:52] 2025-12-16 09:49:07,621 | INFO     | executing command: cat /etc/os-release
[2025-12-16 10:49:52] 2025-12-16 09:49:07,629 | INFO     | cat /etc/os-release:
[2025-12-16 10:49:52] NAME="CentOS Linux"
[2025-12-16 10:49:52] VERSION="7 (Core)"
[2025-12-16 10:49:52] ID="centos"
[2025-12-16 10:49:52] ID_LIKE="rhel fedora"
[2025-12-16 10:49:52] VERSION_ID="7"
[2025-12-16 10:49:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 10:49:52] ANSI_COLOR="0;31"
[2025-12-16 10:49:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 10:49:52] HOME_URL="https://www.centos.org/"
[2025-12-16 10:49:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 10:49:52] 
[2025-12-16 10:49:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 10:49:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 10:49:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 10:49:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 10:49:52] 
[2025-12-16 10:49:52] 2025-12-16 09:49:07,629 | INFO     | ***************************************
[2025-12-16 10:49:52] 2025-12-16 09:49:08,133 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-16 10:49:52] 2025-12-16 09:49:08,144 | INFO     | sufficient remaining disk space (386150694912 B)
[2025-12-16 10:49:52] 2025-12-16 09:49:08,144 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 10:49:52] 2025-12-16 09:49:08,144 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 10:49:52] 2025-12-16 09:49:08,144 | INFO     | update_server=False
[2025-12-16 10:49:52] 2025-12-16 09:49:08,144 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 10:49:52] 2025-12-16 09:49:08,144 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 10:49:52] 2025-12-16 09:49:08,145 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 10:49:52] 2025-12-16 09:49:08,145 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 10:49:52] 2025-12-16 09:49:08,145 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 10:49:52] 2025-12-16 09:49:08,145 | INFO     | aborting loop
[2025-12-16 10:49:52] 2025-12-16 09:49:08,740 | INFO     | all data control threads have been joined
[2025-12-16 10:49:52] 2025-12-16 09:49:09,142 | INFO     | all payload control threads have been joined
[2025-12-16 10:49:52] 2025-12-16 09:49:09,149 | INFO     | [job] job monitor thread has finished
[2025-12-16 10:49:52] 2025-12-16 09:49:09,149 | INFO     | [job] retrieve thread has finished
[2025-12-16 10:49:52] 2025-12-16 09:49:09,150 | INFO     | [job] queue monitor thread has finished
[2025-12-16 10:49:52] 2025-12-16 09:49:09,175 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 10:49:52] 2025-12-16 09:49:09,175 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 10:49:52] 2025-12-16 09:49:09,515 | INFO     | [payload] failed_post thread has finished
[2025-12-16 10:49:52] 2025-12-16 09:49:09,642 | INFO     | all job control threads have been joined
[2025-12-16 10:49:52] 2025-12-16 09:49:09,745 | INFO     | [data] control thread has finished
[2025-12-16 10:49:52] 2025-12-16 09:49:10,051 | INFO     | [data] copytool_in thread has finished
[2025-12-16 10:49:52] 2025-12-16 09:49:10,146 | INFO     | [payload] control thread has finished
[2025-12-16 10:49:52] 2025-12-16 09:49:10,151 | INFO     | [data] copytool_out thread has finished
[2025-12-16 10:49:52] 2025-12-16 09:49:10,154 | INFO     | [payload] validate_post thread has finished
[2025-12-16 10:49:52] 2025-12-16 09:49:10,519 | INFO     | [job] validate thread has finished
[2025-12-16 10:49:52] 2025-12-16 09:49:10,544 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 10:49:52] 2025-12-16 09:49:10,648 | INFO     | [job] control thread has finished
[2025-12-16 10:49:52] 2025-12-16 09:49:12,152 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 10:49:52] 2025-12-16 09:49:18,402 | INFO     | job.realtimelogging is not enabled
[2025-12-16 10:49:52] 2025-12-16 09:49:19,407 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 10:49:52] 2025-12-16 09:49:38,954 | INFO     | PID=774036 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 10:49:52] 2025-12-16 09:49:38,955 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 10:49:52] 2025-12-16 09:49:38,955 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 10:49:52] 2025-12-16 09:49:38,955 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 10:49:52] 2025-12-16 09:49:46,216 | INFO     | [monitor] cgroup control has ended
[2025-12-16 10:49:52] 2025-12-16 09:49:47,109 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140627204671296)>', '<ExcThread(monitor, started 140626490291968)>']
[2025-12-16 10:49:52] 2025-12-16 09:49:48,000 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 10:49:52] 2025-12-16 09:49:48,001 | INFO     | [monitor] control thread has ended
[2025-12-16 10:49:52] 2025-12-16 09:49:52,126 | INFO     | all workflow threads have been joined
[2025-12-16 10:49:52] 2025-12-16 09:49:52,127 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 10:49:52] 2025-12-16 09:49:52,127 | INFO     | traces error code: 0
[2025-12-16 10:49:52] 2025-12-16 09:49:52,127 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 10:49:52] 2025-12-16 09:49:52,176 [wrapper] ==== pilot stdout END ====
[2025-12-16 10:49:52] 2025-12-16 09:49:52,178 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 10:49:52] 2025-12-16 09:49:52,181 [wrapper] pilotpid: 774036
[2025-12-16 10:49:52] 2025-12-16 09:49:52,183 [wrapper] Pilot exit status: 0
[2025-12-16 10:49:52] 2025-12-16 09:49:52,190 [wrapper] pandaids: 6929804646
[2025-12-16 10:49:52] 2025-12-16 09:49:52,208 [wrapper] cleanup supervisor_pilot  797268 774037
[2025-12-16 10:49:52] 2025-12-16 09:49:52,210 [wrapper] Test setup, not cleaning
[2025-12-16 10:49:52] 2025-12-16 09:49:52,212 [wrapper] apfmon messages muted
[2025-12-16 10:49:52] 2025-12-16 09:49:52,215 [wrapper] ==== wrapper stdout END ====
[2025-12-16 10:49:52] 2025-12-16 09:49:52,217 [wrapper] ==== wrapper stderr END ====
[2025-12-16 10:49:52]  *** Error codes and diagnostics ***
[2025-12-16 10:49:52]     "exeErrorCode": 0,
[2025-12-16 10:49:52]     "exeErrorDiag": "",
[2025-12-16 10:49:52]     "pilotErrorCode": 0,
[2025-12-16 10:49:52]     "pilotErrorDiag": "",
[2025-12-16 10:49:52]  *** Listing of results directory ***
[2025-12-16 10:49:52] total 403492
[2025-12-16 10:49:52] -rw-r--r-- 1 boinc boinc    579449 Dec 15 14:27 pilot3.tar.gz
[2025-12-16 10:49:52] -rwx------ 1 boinc boinc     36322 Dec 15 14:27 runpilot2-wrapper.sh
[2025-12-16 10:49:52] -rw-r--r-- 1 boinc boinc      5112 Dec 15 14:29 queuedata.json
[2025-12-16 10:49:52] -rw-r--r-- 1 boinc boinc       100 Dec 16 08:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 10:49:52] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 08:56 run_atlas
[2025-12-16 10:49:52] -rw-r--r-- 1 boinc boinc       105 Dec 16 08:56 job.xml
[2025-12-16 10:49:52] -rw-r--r-- 2 boinc boinc 203063527 Dec 16 08:56 EVNT.47905905._000021.pool.root.1
[2025-12-16 10:49:52] -rw-r--r-- 2 boinc boinc    592376 Dec 16 08:56 input.tar.gz
[2025-12-16 10:49:52] -rw-r--r-- 2 boinc boinc     15847 Dec 16 08:56 start_atlas.sh
[2025-12-16 10:49:52] drwxrwx--x 2 boinc boinc      4096 Dec 16 08:56 shared
[2025-12-16 10:49:52] -rw-r--r-- 1 boinc boinc         0 Dec 16 08:56 boinc_setup_complete
[2025-12-16 10:49:52] -rw-r--r-- 1 boinc boinc      6447 Dec 16 08:56 init_data.xml
[2025-12-16 10:49:52] -rw-r--r-- 1 boinc boinc         0 Dec 16 08:56 boinc_lockfile
[2025-12-16 10:49:52] -rw-r--r-- 1 boinc boinc      2475 Dec 16 08:56 pandaJob.out
[2025-12-16 10:49:52] -rw------- 1 boinc boinc    994531 Dec 16 08:56 agis_schedconf.cvmfs.json
[2025-12-16 10:49:52] -rw------- 1 boinc boinc   1516240 Dec 16 08:56 agis_ddmendpoints.agis.ALL.json
[2025-12-16 10:49:52] drwx------ 5 boinc boinc      4096 Dec 16 08:56 pilot3
[2025-12-16 10:49:52] -rw------- 1 boinc boinc 203684838 Dec 16 10:48 HITS.47905907._000440.pool.root.1
[2025-12-16 10:49:52] -rw-r--r-- 1 boinc boinc       529 Dec 16 10:48 boinc_task_state.xml
[2025-12-16 10:49:52] -rw------- 1 boinc boinc      1033 Dec 16 10:48 memory_monitor_summary.json
[2025-12-16 10:49:52] -rw------- 1 boinc boinc    284091 Dec 16 10:48 log.47905907._000440.job.log.tgz.1
[2025-12-16 10:49:52] -rw------- 1 boinc boinc      7738 Dec 16 10:49 heartbeat.json
[2025-12-16 10:49:52] -rw------- 1 boinc boinc        95 Dec 16 10:49 pilot_heartbeat.json
[2025-12-16 10:49:52] -rw------- 1 boinc boinc      4823 Dec 16 10:49 pilotlog.txt
[2025-12-16 10:49:52] -rw-r--r-- 1 boinc boinc      8192 Dec 16 10:49 boinc_mmap_file
[2025-12-16 10:49:52] -rw------- 1 boinc boinc    973585 Dec 16 10:49 log.47905907._000440.job.log.1
[2025-12-16 10:49:52] -rw------- 1 boinc boinc       357 Dec 16 10:49 output.list
[2025-12-16 10:49:52] -rw-r--r-- 1 boinc boinc       620 Dec 16 10:49 runtime_log
[2025-12-16 10:49:52] -rw------- 1 boinc boinc   1280000 Dec 16 10:49 result.tar.gz
[2025-12-16 10:49:52] -rw-r--r-- 1 boinc boinc      8902 Dec 16 10:49 runtime_log.err
[2025-12-16 10:49:52] -rw------- 1 boinc boinc       660 Dec 16 10:49 rQuLDmNnNp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIbTKDmJV9m7m.diag
[2025-12-16 10:49:52] -rw-r--r-- 1 boinc boinc        27 Dec 16 10:49 wrapper_checkpoint.txt
[2025-12-16 10:49:52] -rw-r--r-- 1 boinc boinc     12227 Dec 16 10:49 stderr.txt
[2025-12-16 10:49:52] HITS file was successfully produced:
[2025-12-16 10:49:52] -rw------- 1 boinc boinc 203684838 Dec 16 10:48 shared/HITS.pool.root.1
[2025-12-16 10:49:52]  *** Contents of shared directory: ***
[2025-12-16 10:49:52] total 399076
[2025-12-16 10:49:52] -rw-r--r-- 2 boinc boinc 203063527 Dec 16 08:56 ATLAS.root_0
[2025-12-16 10:49:52] -rw-r--r-- 2 boinc boinc    592376 Dec 16 08:56 input.tar.gz
[2025-12-16 10:49:52] -rw-r--r-- 2 boinc boinc     15847 Dec 16 08:56 start_atlas.sh
[2025-12-16 10:49:52] -rw------- 1 boinc boinc 203684838 Dec 16 10:48 HITS.pool.root.1
[2025-12-16 10:49:52] -rw------- 1 boinc boinc   1280000 Dec 16 10:49 result.tar.gz
10:50:14 (770310): run_atlas exited; CPU time 19404.394014
10:50:14 (770310): called boinc_finish(0)

</stderr_txt>
]]>

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