Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:56:49 (1852): wrapper (7.7.26015): starting
06:56:49 (1852): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 06:56:49] Arguments: --nthreads 8
[2025-12-16 06:56:49] Threads: 8
[2025-12-16 06:56:49] Checking for CVMFS
[2025-12-16 06:56:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 06:56:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 06:56:51] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 06:56:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 06:56:51] 2.11.2.0 4021 446 56412 154060 2 263 24705326 25165825 4442 130560 0 511368 99.989 111753 3330 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-16 06:56:51] CVMFS is ok
[2025-12-16 06:56:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 06:56:51] Checking for apptainer binary...
[2025-12-16 06:56:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 06:56:52] Running /usr/bin/apptainer --version
[2025-12-16 06:56:52] apptainer version 1.3.2-1.el7
[2025-12-16 06:56:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 06:56:56] cg-vwn448.simple-grid.lan
[2025-12-16 06:56:56] apptainer works
[2025-12-16 06:56:56] Set ATHENA_PROC_NUMBER=8
[2025-12-16 06:56:56] Set ATHENA_CORE_NUMBER=8
[2025-12-16 06:56:57] Starting ATLAS job with PandaID=6929784277
[2025-12-16 06:56:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/25 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 13:06:58]  *** The last 200 lines of the pilot log: ***
[2025-12-16 13:06:58] 2025-12-16 12:06:14,868 | INFO     | using path: /var/lib/boinc/slots/25/PanDA_Pilot-6929784277/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 13:06:58] 2025-12-16 12:06:14,869 | INFO     | extracted standard info from prmon json
[2025-12-16 13:06:58] 2025-12-16 12:06:14,869 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 13:06:58] 2025-12-16 12:06:14,869 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 13:06:58] 2025-12-16 12:06:14,869 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 13:06:58] 2025-12-16 12:06:14,870 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 13:06:58] 2025-12-16 12:06:14,877 | INFO     | fitting pss+swap vs Time
[2025-12-16 13:06:58] 2025-12-16 12:06:14,877 | INFO     | sum of square deviations: 13523929848.0
[2025-12-16 13:06:58] 2025-12-16 12:06:14,881 | INFO     | sum of deviations: 129380826363.50002
[2025-12-16 13:06:58] 2025-12-16 12:06:14,882 | INFO     | mean x: 1765875908.5
[2025-12-16 13:06:58] 2025-12-16 12:06:14,882 | INFO     | mean y: 2468234.3380681816
[2025-12-16 13:06:58] 2025-12-16 12:06:14,882 | INFO     | intersect: -16891325719.415243
[2025-12-16 13:06:58] 2025-12-16 12:06:14,883 | INFO     | chi2: 5.131974895468704
[2025-12-16 13:06:58] 2025-12-16 12:06:14,883 | INFO     | sum of square deviations: 12955770358.0
[2025-12-16 13:06:58] 2025-12-16 12:06:14,890 | INFO     | sum of deviations: 151988994277.0
[2025-12-16 13:06:58] 2025-12-16 12:06:14,890 | INFO     | mean x: 1765875756.0
[2025-12-16 13:06:58] 2025-12-16 12:06:14,891 | INFO     | mean y: 2474226.478386167
[2025-12-16 13:06:58] 2025-12-16 12:06:14,891 | INFO     | intersect: -20713675624.606915
[2025-12-16 13:06:58] 2025-12-16 12:06:14,891 | INFO     | chi2: 4.300674558897094
[2025-12-16 13:06:58] 2025-12-16 12:06:14,891 | INFO     | current chi2=4.300674558897094 (change=16.198449008501775 %)
[2025-12-16 13:06:58] 2025-12-16 12:06:14,891 | INFO     | right removable region: 346
[2025-12-16 13:06:58] 2025-12-16 12:06:14,892 | INFO     | sum of square deviations: 12955770358.0
[2025-12-16 13:06:58] 2025-12-16 12:06:14,899 | INFO     | sum of deviations: 17038564713.0
[2025-12-16 13:06:58] 2025-12-16 12:06:14,899 | INFO     | mean x: 1765876061.0
[2025-12-16 13:06:58] 2025-12-16 12:06:14,900 | INFO     | mean y: 2498350.1296829972
[2025-12-16 13:06:58] 2025-12-16 12:06:14,900 | INFO     | intersect: -2319864018.844165
[2025-12-16 13:06:58] 2025-12-16 12:06:14,900 | INFO     | chi2: 1.2955697655932115
[2025-12-16 13:06:58] 2025-12-16 12:06:14,900 | INFO     | current chi2=1.2955697655932115 (change=74.75494732569446 %)
[2025-12-16 13:06:58] 2025-12-16 12:06:14,901 | INFO     | sum of square deviations: 12403750705.5
[2025-12-16 13:06:58] 2025-12-16 12:06:14,905 | INFO     | sum of deviations: -11300839168.500002
[2025-12-16 13:06:58] 2025-12-16 12:06:14,905 | INFO     | mean x: 1765876213.5
[2025-12-16 13:06:58] 2025-12-16 12:06:14,905 | INFO     | mean y: 2506144.312865497
[2025-12-16 13:06:58] 2025-12-16 12:06:14,905 | INFO     | intersect: 1611364912.4429398
[2025-12-16 13:06:58] 2025-12-16 12:06:14,906 | INFO     | chi2: 0.9570629558809385
[2025-12-16 13:06:58] 2025-12-16 12:06:14,906 | INFO     | current chi2=0.9570629558809385 (change=26.128026348104733 %)
[2025-12-16 13:06:58] 2025-12-16 12:06:14,907 | INFO     | sum of square deviations: 11867638328.0
[2025-12-16 13:06:58] 2025-12-16 12:06:14,910 | INFO     | sum of deviations: -25727975612.0
[2025-12-16 13:06:58] 2025-12-16 12:06:14,910 | INFO     | mean x: 1765876366.0
[2025-12-16 13:06:58] 2025-12-16 12:06:14,911 | INFO     | mean y: 2510232.6201780415
[2025-12-16 13:06:58] 2025-12-16 12:06:14,911 | INFO     | intersect: 3830771831.312806
[2025-12-16 13:06:58] 2025-12-16 12:06:14,911 | INFO     | chi2: 0.8783329081189697
[2025-12-16 13:06:58] 2025-12-16 12:06:14,911 | INFO     | current chi2=0.8783329081189697 (change=8.226214093669618 %)
[2025-12-16 13:06:58] 2025-12-16 12:06:14,911 | INFO     | left removable region: 30
[2025-12-16 13:06:58] 2025-12-16 12:06:14,912 | INFO     | sum of square deviations: 9784425315.0
[2025-12-16 13:06:58] 2025-12-16 12:06:14,915 | INFO     | sum of deviations: -6002322255.499997
[2025-12-16 13:06:58] 2025-12-16 12:06:14,916 | INFO     | mean x: 1765876640.5
[2025-12-16 13:06:58] 2025-12-16 12:06:14,916 | INFO     | mean y: 2518374.174050633
[2025-12-16 13:06:58] 2025-12-16 12:06:14,916 | INFO     | intersect: 1085807409.401432
[2025-12-16 13:06:58] 2025-12-16 12:06:14,916 | INFO     | chi2: 0.006841630319183961
[2025-12-16 13:06:58] 2025-12-16 12:06:14,917 | INFO     | current memory leak: -0.61 B/s (using 316 data points, chi2=0.01)
[2025-12-16 13:06:58] 2025-12-16 12:06:14,917 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2025-12-16 13:06:58] 2025-12-16 12:06:14,917 | INFO     | ..............................
[2025-12-16 13:06:58] 2025-12-16 12:06:14,918 | INFO     | . Timing measurements:
[2025-12-16 13:06:58] 2025-12-16 12:06:14,918 | INFO     | . get job = 0 s
[2025-12-16 13:06:58] 2025-12-16 12:06:14,918 | INFO     | . initial setup = 5 s
[2025-12-16 13:06:58] 2025-12-16 12:06:14,918 | INFO     | . payload setup = 116 s
[2025-12-16 13:06:58] 2025-12-16 12:06:14,918 | INFO     | . stage-in = 0 s
[2025-12-16 13:06:58] 2025-12-16 12:06:14,918 | INFO     | . payload execution = 21623 s
[2025-12-16 13:06:58] 2025-12-16 12:06:14,918 | INFO     | . stage-out = 6 s
[2025-12-16 13:06:58] 2025-12-16 12:06:14,918 | INFO     | . log creation = 1 s
[2025-12-16 13:06:58] 2025-12-16 12:06:14,918 | INFO     | ..............................
[2025-12-16 13:06:58] 2025-12-16 12:06:15,020 | INFO     | time since job start (22024s) is within the limit (174528.0s)
[2025-12-16 13:06:58] 2025-12-16 12:06:15,226 | INFO     | 
[2025-12-16 13:06:58] 2025-12-16 12:06:15,226 | INFO     | job summary report
[2025-12-16 13:06:58] 2025-12-16 12:06:15,226 | INFO     | --------------------------------------------------
[2025-12-16 13:06:58] 2025-12-16 12:06:15,226 | INFO     | PanDA job id: 6929784277
[2025-12-16 13:06:58] 2025-12-16 12:06:15,226 | INFO     | task id: 47898763
[2025-12-16 13:06:58] 2025-12-16 12:06:15,226 | INFO     | errors: (none)
[2025-12-16 13:06:58] 2025-12-16 12:06:15,226 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 13:06:58] 2025-12-16 12:06:15,227 | INFO     | pilot state: finished 
[2025-12-16 13:06:58] 2025-12-16 12:06:15,227 | INFO     | transexitcode: 0
[2025-12-16 13:06:58] 2025-12-16 12:06:15,227 | INFO     | exeerrorcode: 0
[2025-12-16 13:06:58] 2025-12-16 12:06:15,227 | INFO     | exeerrordiag: 
[2025-12-16 13:06:58] 2025-12-16 12:06:15,227 | INFO     | exitcode: 0
[2025-12-16 13:06:58] 2025-12-16 12:06:15,227 | INFO     | exitmsg: OK
[2025-12-16 13:06:58] 2025-12-16 12:06:15,227 | INFO     | cpuconsumptiontime: 83113 s
[2025-12-16 13:06:58] 2025-12-16 12:06:15,227 | INFO     | nevents: 400
[2025-12-16 13:06:58] 2025-12-16 12:06:15,227 | INFO     | neventsw: 0
[2025-12-16 13:06:58] 2025-12-16 12:06:15,228 | INFO     | pid: 12208
[2025-12-16 13:06:58] 2025-12-16 12:06:15,228 | INFO     | pgrp: 12208
[2025-12-16 13:06:58] 2025-12-16 12:06:15,228 | INFO     | corecount: 8
[2025-12-16 13:06:58] 2025-12-16 12:06:15,228 | INFO     | event service: False
[2025-12-16 13:06:58] 2025-12-16 12:06:15,228 | INFO     | sizes: {0: 2283130, 1: 2283987, 12: 2283987, 23: 2284015, 34: 2284043, 44: 2284071, 55: 2284227, 66: 2284255, 76: 2284283, 87: 2284339, 94: 2284629, 98: 2284937, 2
[2025-12-16 13:06:58] 2025-12-16 12:06:15,228 | INFO     | --------------------------------------------------
[2025-12-16 13:06:58] 2025-12-16 12:06:15,228 | INFO     | 
[2025-12-16 13:06:58] 2025-12-16 12:06:15,228 | INFO     | executing command: ls -lF /var/lib/boinc/slots/25
[2025-12-16 13:06:58] 2025-12-16 12:06:15,632 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 13:06:58] 2025-12-16 12:06:15,633 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 13:06:58] 2025-12-16 12:06:15,633 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 13:06:58] 2025-12-16 12:06:15,633 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 13:06:58] 2025-12-16 12:06:15,633 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 13:06:58] 2025-12-16 12:06:15,633 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 13:06:58] 2025-12-16 12:06:15,633 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 13:06:58] 2025-12-16 12:06:15,633 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 13:06:58] 2025-12-16 12:06:15,634 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 13:06:58] 2025-12-16 12:06:15,634 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 13:06:58] 2025-12-16 12:06:15,634 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 13:06:58] 2025-12-16 12:06:15,634 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 13:06:58] 2025-12-16 12:06:15,634 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 13:06:58] 2025-12-16 12:06:15,634 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 13:06:58] 2025-12-16 12:06:15,634 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 13:06:58] 2025-12-16 12:06:15,634 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 13:06:58] 2025-12-16 12:06:15,634 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 13:06:58] 2025-12-16 12:06:15,635 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 13:06:58] 2025-12-16 12:06:15,635 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 13:06:58] 2025-12-16 12:06:15,635 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 13:06:58] 2025-12-16 12:06:15,635 | INFO     | job 6929784277 has completed (purged errors)
[2025-12-16 13:06:58] 2025-12-16 12:06:15,635 | INFO     | overall cleanup function is called
[2025-12-16 13:06:58] 2025-12-16 12:06:16,645 | INFO     | --- collectZombieJob: --- 10, [12208]
[2025-12-16 13:06:58] 2025-12-16 12:06:16,645 | INFO     | zombie collector waiting for pid 12208
[2025-12-16 13:06:58] 2025-12-16 12:06:16,645 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 13:06:58] 2025-12-16 12:06:16,645 | INFO     | collected zombie processes
[2025-12-16 13:06:58] 2025-12-16 12:06:16,645 | INFO     | will attempt to kill all subprocesses of pid=12208
[2025-12-16 13:06:58] 2025-12-16 12:06:16,771 | INFO     | process IDs to be killed: [12208] (in reverse order)
[2025-12-16 13:06:58] 2025-12-16 12:06:17,698 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 13:06:58] 2025-12-16 12:06:17,698 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 13:06:58] 2025-12-16 12:06:17,702 | INFO     | did not find any defunct processes belonging to 12208
[2025-12-16 13:06:58] 2025-12-16 12:06:17,705 | INFO     | did not find any defunct processes belonging to 12208
[2025-12-16 13:06:58] 2025-12-16 12:06:17,705 | INFO     | ready for new job
[2025-12-16 13:06:58] 2025-12-16 12:06:17,705 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 13:06:58] 2025-12-16 12:06:17,708 | INFO     | ***************************************
[2025-12-16 13:06:58] 2025-12-16 12:06:17,708 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 13:06:58] 2025-12-16 12:06:17,708 | INFO     | ***************************************
[2025-12-16 13:06:58] 2025-12-16 12:06:17,708 | INFO     | 
[2025-12-16 13:06:58] 2025-12-16 12:06:17,709 | INFO     | pilot is running in a VM
[2025-12-16 13:06:58] 2025-12-16 12:06:17,709 | INFO     | architecture information:
[2025-12-16 13:06:58] 2025-12-16 12:06:17,719 | INFO     | executing command: cat /etc/os-release
[2025-12-16 13:06:58] 2025-12-16 12:06:18,026 | INFO     | cat /etc/os-release:
[2025-12-16 13:06:58] NAME="CentOS Linux"
[2025-12-16 13:06:58] VERSION="7 (Core)"
[2025-12-16 13:06:58] ID="centos"
[2025-12-16 13:06:58] ID_LIKE="rhel fedora"
[2025-12-16 13:06:58] VERSION_ID="7"
[2025-12-16 13:06:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 13:06:58] ANSI_COLOR="0;31"
[2025-12-16 13:06:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 13:06:58] HOME_URL="https://www.centos.org/"
[2025-12-16 13:06:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 13:06:58] 
[2025-12-16 13:06:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 13:06:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 13:06:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 13:06:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 13:06:58] 
[2025-12-16 13:06:58] 2025-12-16 12:06:18,026 | INFO     | ***************************************
[2025-12-16 13:06:58] 2025-12-16 12:06:18,530 | INFO     | executing command: df -mP /var/lib/boinc/slots/25
[2025-12-16 13:06:58] 2025-12-16 12:06:18,800 | INFO     | sufficient remaining disk space (495841181696 B)
[2025-12-16 13:06:58] 2025-12-16 12:06:18,800 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 13:06:58] 2025-12-16 12:06:18,800 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 13:06:58] 2025-12-16 12:06:18,800 | INFO     | update_server=False
[2025-12-16 13:06:58] 2025-12-16 12:06:18,801 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 13:06:58] 2025-12-16 12:06:18,802 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 13:06:58] 2025-12-16 12:06:18,806 | INFO     | all payload control threads have been joined
[2025-12-16 13:06:58] 2025-12-16 12:06:18,952 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-16 13:06:58] 2025-12-16 12:06:18,956 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-16 13:06:58] 2025-12-16 12:06:18,956 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 13:06:58] 2025-12-16 12:06:18,956 | INFO     | will abort loop
[2025-12-16 13:06:58] 2025-12-16 12:06:19,621 | INFO     | all data control threads have been joined
[2025-12-16 13:06:58] 2025-12-16 12:06:19,716 | INFO     | all job control threads have been joined
[2025-12-16 13:06:58] 2025-12-16 12:06:19,807 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 13:06:58] 2025-12-16 12:06:19,807 | INFO     | [job] retrieve thread has finished
[2025-12-16 13:06:58] 2025-12-16 12:06:19,812 | INFO     | [payload] control thread has finished
[2025-12-16 13:06:58] 2025-12-16 12:06:19,958 | INFO     | [data] copytool_in thread has finished
[2025-12-16 13:06:58] 2025-12-16 12:06:19,958 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 13:06:58] 2025-12-16 12:06:19,965 | INFO     | [job] job monitor thread has finished
[2025-12-16 13:06:58] 2025-12-16 12:06:20,078 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 13:06:58] 2025-12-16 12:06:20,287 | INFO     | [job] validate thread has finished
[2025-12-16 13:06:58] 2025-12-16 12:06:20,459 | INFO     | [payload] failed_post thread has finished
[2025-12-16 13:06:58] 2025-12-16 12:06:20,572 | INFO     | [payload] validate_post thread has finished
[2025-12-16 13:06:58] 2025-12-16 12:06:20,626 | INFO     | [data] control thread has finished
[2025-12-16 13:06:58] 2025-12-16 12:06:20,722 | INFO     | [job] control thread has finished
[2025-12-16 13:06:58] 2025-12-16 12:06:20,809 | INFO     | [data] copytool_out thread has finished
[2025-12-16 13:06:58] 2025-12-16 12:06:20,851 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 13:06:58] 2025-12-16 12:06:20,887 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 13:06:58] 2025-12-16 12:06:21,085 | INFO     | [job] queue monitor thread has finished
[2025-12-16 13:06:58] 2025-12-16 12:06:21,610 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 13:06:58] 2025-12-16 12:06:25,619 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 13:06:58] 2025-12-16 12:06:48,289 | INFO     | PID=5628 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-16 13:06:58] 2025-12-16 12:06:48,289 | INFO     | .. there are 9 such processes running
[2025-12-16 13:06:58] 2025-12-16 12:06:48,295 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 13:06:58] 2025-12-16 12:06:48,295 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 13:06:58] 2025-12-16 12:06:48,295 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 13:06:58] 2025-12-16 12:06:48,363 | INFO     | [monitor] cgroup control has ended
[2025-12-16 13:06:58] 2025-12-16 12:06:50,278 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140112614913856)>', '<ExcThread(monitor, started 140111958238976)>']
[2025-12-16 13:06:58] 2025-12-16 12:06:50,307 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 13:06:58] 2025-12-16 12:06:50,307 | INFO     | [monitor] control thread has ended
[2025-12-16 13:06:58] 2025-12-16 12:06:55,304 | INFO     | all workflow threads have been joined
[2025-12-16 13:06:58] 2025-12-16 12:06:55,304 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 13:06:58] 2025-12-16 12:06:55,304 | INFO     | traces error code: 0
[2025-12-16 13:06:58] 2025-12-16 12:06:55,304 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 13:06:58] 2025-12-16 12:06:55,682 [wrapper] ==== pilot stdout END ====
[2025-12-16 13:06:58] 2025-12-16 12:06:55,791 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 13:06:58] 2025-12-16 12:06:55,896 [wrapper] pilotpid: 5628
[2025-12-16 13:06:58] 2025-12-16 12:06:55,966 [wrapper] Pilot exit status: 0
[2025-12-16 13:06:58] 2025-12-16 12:06:56,305 [wrapper] pandaids: 6929784277
[2025-12-16 13:06:58] 2025-12-16 12:06:56,846 [wrapper] cleanup supervisor_pilot 17054 5629
[2025-12-16 13:06:58] 2025-12-16 12:06:56,859 [wrapper] Test setup, not cleaning
[2025-12-16 13:06:58] 2025-12-16 12:06:56,899 [wrapper] apfmon messages muted
[2025-12-16 13:06:58] 2025-12-16 12:06:56,912 [wrapper] ==== wrapper stdout END ====
[2025-12-16 13:06:58] 2025-12-16 12:06:56,951 [wrapper] ==== wrapper stderr END ====
[2025-12-16 13:06:58]  *** Error codes and diagnostics ***
[2025-12-16 13:06:58]     "exeErrorCode": 0,
[2025-12-16 13:06:58]     "exeErrorDiag": "",
[2025-12-16 13:06:58]     "pilotErrorCode": 0,
[2025-12-16 13:06:58]     "pilotErrorDiag": "",
[2025-12-16 13:06:58]  *** Listing of results directory ***
[2025-12-16 13:06:58] total 446588
[2025-12-16 13:06:58] -rw-r--r--. 1 boinc boinc    579449 Dec 15 14:27 pilot3.tar.gz
[2025-12-16 13:06:58] -rwx------. 1 boinc boinc     36322 Dec 15 14:27 runpilot2-wrapper.sh
[2025-12-16 13:06:58] -rw-r--r--. 1 boinc boinc      5112 Dec 15 14:27 queuedata.json
[2025-12-16 13:06:58] -rw-r--r--. 1 boinc boinc       100 Dec 16 06:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 13:06:58] -rwxr-xr-x. 1 boinc boinc      7986 Dec 16 06:56 run_atlas
[2025-12-16 13:06:58] -rw-r--r--. 1 boinc boinc       105 Dec 16 06:56 job.xml
[2025-12-16 13:06:58] -rw-r--r--. 2 boinc boinc 224349303 Dec 16 06:56 EVNT.47898761._000687.pool.root.1
[2025-12-16 13:06:58] -rw-r--r--. 2 boinc boinc     15847 Dec 16 06:56 start_atlas.sh
[2025-12-16 13:06:58] drwxrwx--x. 2 boinc boinc        68 Dec 16 06:56 shared
[2025-12-16 13:06:58] -rw-r--r--. 2 boinc boinc    592395 Dec 16 06:56 input.tar.gz
[2025-12-16 13:06:58] -rw-r--r--. 1 boinc boinc      6393 Dec 16 06:56 init_data.xml
[2025-12-16 13:06:58] -rw-r--r--. 1 boinc boinc         0 Dec 16 06:56 boinc_lockfile
[2025-12-16 13:06:58] -rw-r--r--. 1 boinc boinc      2508 Dec 16 06:56 pandaJob.out
[2025-12-16 13:06:58] -rw-------. 1 boinc boinc    994531 Dec 16 06:59 agis_schedconf.cvmfs.json
[2025-12-16 13:06:58] drwx------. 5 boinc boinc      4096 Dec 16 06:59 pilot3
[2025-12-16 13:06:58] -rw-------. 1 boinc boinc 222062715 Dec 16 13:03 HITS.47898763._017203.pool.root.1
[2025-12-16 13:06:58] -rw-r--r--. 1 boinc boinc       531 Dec 16 13:03 boinc_task_state.xml
[2025-12-16 13:06:58] -rw-------. 1 boinc boinc      1017 Dec 16 13:04 memory_monitor_summary.json
[2025-12-16 13:06:58] -rw-------. 1 boinc boinc   1516240 Dec 16 13:04 agis_ddmendpoints.agis.ALL.json
[2025-12-16 13:06:58] -rw-------. 1 boinc boinc    569175 Dec 16 13:04 log.47898763._017203.job.log.tgz.1
[2025-12-16 13:06:58] -rw-------. 1 boinc boinc        95 Dec 16 13:05 pilot_heartbeat.json
[2025-12-16 13:06:58] -rw-------. 1 boinc boinc      7781 Dec 16 13:06 heartbeat.json
[2025-12-16 13:06:58] -rw-r--r--. 1 boinc boinc        28 Dec 16 13:06 wrapper_checkpoint.txt
[2025-12-16 13:06:58] -rw-r--r--. 1 boinc boinc      8192 Dec 16 13:06 boinc_mmap_file
[2025-12-16 13:06:58] -rw-------. 1 boinc boinc      5070 Dec 16 13:06 pilotlog.txt
[2025-12-16 13:06:58] -rw-------. 1 boinc boinc   2925968 Dec 16 13:06 log.47898763._017203.job.log.1
[2025-12-16 13:06:58] -rw-------. 1 boinc boinc       357 Dec 16 13:06 output.list
[2025-12-16 13:06:58] -rw-r--r--. 1 boinc boinc       620 Dec 16 13:06 runtime_log
[2025-12-16 13:06:58] -rw-------. 1 boinc boinc   3512320 Dec 16 13:06 result.tar.gz
[2025-12-16 13:06:58] -rw-------. 1 boinc boinc       658 Dec 16 13:06 SENNDm2mNp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmi2XKDmymOntn.diag
[2025-12-16 13:06:58] -rw-r--r--. 1 boinc boinc      8833 Dec 16 13:06 runtime_log.err
[2025-12-16 13:06:58] -rw-r--r--. 1 boinc boinc     20784 Dec 16 13:06 stderr.txt
[2025-12-16 13:06:58] HITS file was successfully produced:
[2025-12-16 13:06:58] -rw-------. 1 boinc boinc 222062715 Dec 16 13:03 shared/HITS.pool.root.1
[2025-12-16 13:06:58]  *** Contents of shared directory: ***
[2025-12-16 13:06:58] total 439980
[2025-12-16 13:06:58] -rw-r--r--. 2 boinc boinc 224349303 Dec 16 06:56 ATLAS.root_0
[2025-12-16 13:06:58] -rw-r--r--. 2 boinc boinc     15847 Dec 16 06:56 start_atlas.sh
[2025-12-16 13:06:58] -rw-r--r--. 2 boinc boinc    592395 Dec 16 06:56 input.tar.gz
[2025-12-16 13:06:58] -rw-------. 1 boinc boinc 222062715 Dec 16 13:03 HITS.pool.root.1
[2025-12-16 13:06:58] -rw-------. 1 boinc boinc   3512320 Dec 16 13:06 result.tar.gz
13:06:59 (1852): run_atlas exited; CPU time 83441.704719
13:06:59 (1852): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN