Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:50:18 (29609): wrapper (7.7.26015): starting
06:50:18 (29609): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 06:50:18] Arguments: --nthreads 8
[2025-12-16 06:50:18] Threads: 8
[2025-12-16 06:50:18] Checking for CVMFS
[2025-12-16 06:50:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 06:50:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 06:50:20] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 06:50:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 06:50:21] 2.11.2.0 22837 457 60248 154060 2 60 24770991 25165824 4712 130560 0 581483 99.829 238904 1621 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-16 06:50:21] CVMFS is ok
[2025-12-16 06:50:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 06:50:21] Checking for apptainer binary...
[2025-12-16 06:50:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 06:50:21] Running /usr/bin/apptainer --version
[2025-12-16 06:50:21] apptainer version 1.3.2-1.el7
[2025-12-16 06:50:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 06:51:09] cg-vwn396.simple-grid.lan
[2025-12-16 06:51:09] apptainer works
[2025-12-16 06:51:09] Set ATHENA_PROC_NUMBER=8
[2025-12-16 06:51:09] Set ATHENA_CORE_NUMBER=8
[2025-12-16 06:51:09] Starting ATLAS job with PandaID=6929808829
[2025-12-16 06:51:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 12:58:00]  *** The last 200 lines of the pilot log: ***
[2025-12-16 12:58:00] 2025-12-16 11:56:48,489 | INFO     | time since job start (21755s) is within the limit (174528.0s)
[2025-12-16 12:58:00] 2025-12-16 11:56:50,068 | INFO     | monitor loop #1520: job 0:6929808829 is in state 'finished'
[2025-12-16 12:58:00] 2025-12-16 11:56:50,068 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 12:58:00] 2025-12-16 11:56:50,496 | INFO     | time since job start (21757s) is within the limit (174528.0s)
[2025-12-16 12:58:00] 2025-12-16 11:56:51,571 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 12:58:00] 2025-12-16 11:56:51,572 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-16 12:58:00] 2025-12-16 11:56:51,574 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6929808829/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 12:58:00] 2025-12-16 11:56:51,575 | INFO     | extracted standard info from prmon json
[2025-12-16 12:58:00] 2025-12-16 11:56:51,575 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 12:58:00] 2025-12-16 11:56:51,575 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 12:58:00] 2025-12-16 11:56:51,575 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 12:58:00] 2025-12-16 11:56:51,576 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 12:58:00] 2025-12-16 11:56:51,582 | INFO     | fitting pss+swap vs Time
[2025-12-16 12:58:00] 2025-12-16 11:56:51,583 | INFO     | sum of square deviations: 13181084350.0
[2025-12-16 12:58:00] 2025-12-16 11:56:51,587 | INFO     | sum of deviations: 118054556966.00003
[2025-12-16 12:58:00] 2025-12-16 11:56:51,587 | INFO     | mean x: 1765875505.0
[2025-12-16 12:58:00] 2025-12-16 11:56:51,588 | INFO     | mean y: 2469915.6676217765
[2025-12-16 12:58:00] 2025-12-16 11:56:51,588 | INFO     | intersect: -15813349546.85532
[2025-12-16 12:58:00] 2025-12-16 11:56:51,588 | INFO     | chi2: 4.548581539767884
[2025-12-16 12:58:00] 2025-12-16 11:56:51,589 | INFO     | sum of square deviations: 12622636670.0
[2025-12-16 12:58:00] 2025-12-16 11:56:51,593 | INFO     | sum of deviations: 139074480384.5
[2025-12-16 12:58:00] 2025-12-16 11:56:51,593 | INFO     | mean x: 1765875352.5
[2025-12-16 12:58:00] 2025-12-16 11:56:51,593 | INFO     | mean y: 2475581.5610465114
[2025-12-16 12:58:00] 2025-12-16 11:56:51,593 | INFO     | intersect: -19453696967.270885
[2025-12-16 12:58:00] 2025-12-16 11:56:51,594 | INFO     | chi2: 3.788930337896816
[2025-12-16 12:58:00] 2025-12-16 11:56:51,594 | INFO     | current chi2=3.788930337896816 (change=16.700837288053396 %)
[2025-12-16 12:58:00] 2025-12-16 11:56:51,594 | INFO     | right removable region: 343
[2025-12-16 12:58:00] 2025-12-16 11:56:51,595 | INFO     | sum of square deviations: 12622636670.0
[2025-12-16 12:58:00] 2025-12-16 11:56:51,598 | INFO     | sum of deviations: 9648655174.999996
[2025-12-16 12:58:00] 2025-12-16 11:56:51,599 | INFO     | mean x: 1765875657.5
[2025-12-16 12:58:00] 2025-12-16 11:56:51,599 | INFO     | mean y: 2499471.5755813955
[2025-12-16 12:58:00] 2025-12-16 11:56:51,599 | INFO     | intersect: -1347323528.6885858
[2025-12-16 12:58:00] 2025-12-16 11:56:51,599 | INFO     | chi2: 0.8885846164630462
[2025-12-16 12:58:00] 2025-12-16 11:56:51,599 | INFO     | current chi2=0.8885846164630462 (change=80.4645776118506 %)
[2025-12-16 12:58:00] 2025-12-16 11:56:51,600 | INFO     | sum of square deviations: 12080189290.0
[2025-12-16 12:58:00] 2025-12-16 11:56:51,604 | INFO     | sum of deviations: -2032845739.9999962
[2025-12-16 12:58:00] 2025-12-16 11:56:51,604 | INFO     | mean x: 1765875810.0
[2025-12-16 12:58:00] 2025-12-16 11:56:51,604 | INFO     | mean y: 2502736.103244838
[2025-12-16 12:58:00] 2025-12-16 11:56:51,604 | INFO     | intersect: 299663072.8786914
[2025-12-16 12:58:00] 2025-12-16 11:56:51,605 | INFO     | chi2: 0.8268596359743001
[2025-12-16 12:58:00] 2025-12-16 11:56:51,605 | INFO     | current chi2=0.8268596359743001 (change=6.946438115757438 %)
[2025-12-16 12:58:00] 2025-12-16 11:56:51,605 | INFO     | left removable region: 20
[2025-12-16 12:58:00] 2025-12-16 11:56:51,606 | INFO     | sum of square deviations: 10449170802.0
[2025-12-16 12:58:00] 2025-12-16 11:56:51,609 | INFO     | sum of deviations: 23624379998.0
[2025-12-16 12:58:00] 2025-12-16 11:56:51,609 | INFO     | mean x: 1765875932.0
[2025-12-16 12:58:00] 2025-12-16 11:56:51,609 | INFO     | mean y: 2507886.2198142414
[2025-12-16 12:58:00] 2025-12-16 11:56:51,609 | INFO     | intersect: -3989935613.5941157
[2025-12-16 12:58:00] 2025-12-16 11:56:51,610 | INFO     | chi2: 0.0021390360149636423
[2025-12-16 12:58:00] 2025-12-16 11:56:51,610 | INFO     | current memory leak: 2.26 B/s (using 323 data points, chi2=0.00)
[2025-12-16 12:58:00] 2025-12-16 11:56:51,611 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2025-12-16 12:58:00] 2025-12-16 11:56:51,611 | INFO     | ..............................
[2025-12-16 12:58:00] 2025-12-16 11:56:51,611 | INFO     | . Timing measurements:
[2025-12-16 12:58:00] 2025-12-16 11:56:51,611 | INFO     | . get job = 0 s
[2025-12-16 12:58:00] 2025-12-16 11:56:51,611 | INFO     | . initial setup = 6 s
[2025-12-16 12:58:00] 2025-12-16 11:56:51,611 | INFO     | . payload setup = 120 s
[2025-12-16 12:58:00] 2025-12-16 11:56:51,611 | INFO     | . stage-in = 0 s
[2025-12-16 12:58:00] 2025-12-16 11:56:51,611 | INFO     | . payload execution = 21418 s
[2025-12-16 12:58:00] 2025-12-16 11:56:51,612 | INFO     | . stage-out = 1 s
[2025-12-16 12:58:00] 2025-12-16 11:56:51,612 | INFO     | . log creation = 0 s
[2025-12-16 12:58:00] 2025-12-16 11:56:51,612 | INFO     | ..............................
[2025-12-16 12:58:00] 2025-12-16 11:56:52,296 | INFO     | 
[2025-12-16 12:58:00] 2025-12-16 11:56:52,296 | INFO     | job summary report
[2025-12-16 12:58:00] 2025-12-16 11:56:52,296 | INFO     | --------------------------------------------------
[2025-12-16 12:58:00] 2025-12-16 11:56:52,296 | INFO     | PanDA job id: 6929808829
[2025-12-16 12:58:00] 2025-12-16 11:56:52,296 | INFO     | task id: 47898826
[2025-12-16 12:58:00] 2025-12-16 11:56:52,296 | INFO     | errors: (none)
[2025-12-16 12:58:00] 2025-12-16 11:56:52,297 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 12:58:00] 2025-12-16 11:56:52,297 | INFO     | pilot state: finished 
[2025-12-16 12:58:00] 2025-12-16 11:56:52,297 | INFO     | transexitcode: 0
[2025-12-16 12:58:00] 2025-12-16 11:56:52,297 | INFO     | exeerrorcode: 0
[2025-12-16 12:58:00] 2025-12-16 11:56:52,297 | INFO     | exeerrordiag: 
[2025-12-16 12:58:00] 2025-12-16 11:56:52,297 | INFO     | exitcode: 0
[2025-12-16 12:58:00] 2025-12-16 11:56:52,297 | INFO     | exitmsg: OK
[2025-12-16 12:58:00] 2025-12-16 11:56:52,297 | INFO     | cpuconsumptiontime: 80843 s
[2025-12-16 12:58:00] 2025-12-16 11:56:52,297 | INFO     | nevents: 400
[2025-12-16 12:58:00] 2025-12-16 11:56:52,297 | INFO     | neventsw: 0
[2025-12-16 12:58:00] 2025-12-16 11:56:52,297 | INFO     | pid: 7563
[2025-12-16 12:58:00] 2025-12-16 11:56:52,298 | INFO     | pgrp: 7563
[2025-12-16 12:58:00] 2025-12-16 11:56:52,298 | INFO     | corecount: 8
[2025-12-16 12:58:00] 2025-12-16 11:56:52,298 | INFO     | event service: False
[2025-12-16 12:58:00] 2025-12-16 11:56:52,298 | INFO     | sizes: {0: 2283790, 1: 2283989, 12: 2283989, 23: 2284017, 34: 2284045, 44: 2284073, 55: 2284229, 66: 2284257, 72: 2284547, 76: 2284575, 21543: 2317774, 21544: 2318
[2025-12-16 12:58:00] 2025-12-16 11:56:52,298 | INFO     | --------------------------------------------------
[2025-12-16 12:58:00] 2025-12-16 11:56:52,298 | INFO     | 
[2025-12-16 12:58:00] 2025-12-16 11:56:52,298 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-12-16 12:58:00] 2025-12-16 11:56:52,505 | INFO     | time since job start (21759s) is within the limit (174528.0s)
[2025-12-16 12:58:00] 2025-12-16 11:56:52,803 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 12:58:00] 2025-12-16 11:56:52,804 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 12:58:00] 2025-12-16 11:56:52,804 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 12:58:00] 2025-12-16 11:56:52,804 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 12:58:00] 2025-12-16 11:56:52,804 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 12:58:00] 2025-12-16 11:56:52,804 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 12:58:00] 2025-12-16 11:56:52,804 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 12:58:00] 2025-12-16 11:56:52,804 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 12:58:00] 2025-12-16 11:56:52,804 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 12:58:00] 2025-12-16 11:56:52,805 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 12:58:00] 2025-12-16 11:56:52,805 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 12:58:00] 2025-12-16 11:56:52,805 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 12:58:00] 2025-12-16 11:56:52,805 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 12:58:00] 2025-12-16 11:56:52,805 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 12:58:00] 2025-12-16 11:56:52,805 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 12:58:00] 2025-12-16 11:56:52,805 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 12:58:00] 2025-12-16 11:56:52,805 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 12:58:00] 2025-12-16 11:56:52,805 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 12:58:00] 2025-12-16 11:56:52,806 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 12:58:00] 2025-12-16 11:56:52,806 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 12:58:00] 2025-12-16 11:56:52,806 | INFO     | job 6929808829 has completed (purged errors)
[2025-12-16 12:58:00] 2025-12-16 11:56:52,806 | INFO     | overall cleanup function is called
[2025-12-16 12:58:00] 2025-12-16 11:56:53,645 | INFO     | PID=988 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-12-16 12:58:00] 2025-12-16 11:56:53,645 | INFO     | .. there are 9 such processes running
[2025-12-16 12:58:00] 2025-12-16 11:56:53,815 | INFO     | --- collectZombieJob: --- 10, [7563]
[2025-12-16 12:58:00] 2025-12-16 11:56:53,815 | INFO     | zombie collector waiting for pid 7563
[2025-12-16 12:58:00] 2025-12-16 11:56:53,815 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 12:58:00] 2025-12-16 11:56:53,815 | INFO     | collected zombie processes
[2025-12-16 12:58:00] 2025-12-16 11:56:53,816 | INFO     | will attempt to kill all subprocesses of pid=7563
[2025-12-16 12:58:00] 2025-12-16 11:56:53,930 | INFO     | process IDs to be killed: [7563] (in reverse order)
[2025-12-16 12:58:00] 2025-12-16 11:56:54,734 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 12:58:00] 2025-12-16 11:56:54,735 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 12:58:00] 2025-12-16 11:56:54,738 | INFO     | did not find any defunct processes belonging to 7563
[2025-12-16 12:58:00] 2025-12-16 11:56:54,741 | INFO     | did not find any defunct processes belonging to 7563
[2025-12-16 12:58:00] 2025-12-16 11:56:54,742 | INFO     | ready for new job
[2025-12-16 12:58:00] 2025-12-16 11:56:54,742 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 12:58:00] 2025-12-16 11:56:54,744 | INFO     | ***************************************
[2025-12-16 12:58:00] 2025-12-16 11:56:54,744 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 12:58:00] 2025-12-16 11:56:54,745 | INFO     | ***************************************
[2025-12-16 12:58:00] 2025-12-16 11:56:54,745 | INFO     | 
[2025-12-16 12:58:00] 2025-12-16 11:56:54,745 | INFO     | pilot is running in a VM
[2025-12-16 12:58:00] 2025-12-16 11:56:54,745 | INFO     | architecture information:
[2025-12-16 12:58:00] 2025-12-16 11:56:54,758 | INFO     | executing command: cat /etc/os-release
[2025-12-16 12:58:00] 2025-12-16 11:56:55,021 | INFO     | cat /etc/os-release:
[2025-12-16 12:58:00] NAME="CentOS Linux"
[2025-12-16 12:58:00] VERSION="7 (Core)"
[2025-12-16 12:58:00] ID="centos"
[2025-12-16 12:58:00] ID_LIKE="rhel fedora"
[2025-12-16 12:58:00] VERSION_ID="7"
[2025-12-16 12:58:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 12:58:00] ANSI_COLOR="0;31"
[2025-12-16 12:58:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 12:58:00] HOME_URL="https://www.centos.org/"
[2025-12-16 12:58:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 12:58:00] 
[2025-12-16 12:58:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 12:58:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 12:58:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 12:58:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 12:58:00] 
[2025-12-16 12:58:00] 2025-12-16 11:56:55,022 | INFO     | ***************************************
[2025-12-16 12:58:00] 2025-12-16 11:56:55,525 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-12-16 12:58:00] 2025-12-16 11:56:55,824 | INFO     | sufficient remaining disk space (495885221888 B)
[2025-12-16 12:58:00] 2025-12-16 11:56:55,824 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 12:58:00] 2025-12-16 11:56:55,824 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 12:58:00] 2025-12-16 11:56:55,825 | INFO     | update_server=False
[2025-12-16 12:58:00] 2025-12-16 11:56:55,825 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 12:58:00] 2025-12-16 11:56:55,905 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 12:58:00] 2025-12-16 11:56:56,083 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 12:58:00] 2025-12-16 11:56:56,083 | INFO     | aborting loop
[2025-12-16 12:58:00] 2025-12-16 11:56:56,148 | INFO     | all data control threads have been joined
[2025-12-16 12:58:00] 2025-12-16 11:56:56,521 | INFO     | all payload control threads have been joined
[2025-12-16 12:58:00] 2025-12-16 11:56:56,816 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 12:58:00] 2025-12-16 11:56:56,831 | INFO     | [job] retrieve thread has finished
[2025-12-16 12:58:00] 2025-12-16 11:56:56,994 | INFO     | [payload] validate_post thread has finished
[2025-12-16 12:58:00] 2025-12-16 11:56:57,089 | INFO     | [job] job monitor thread has finished
[2025-12-16 12:58:00] 2025-12-16 11:56:57,154 | INFO     | [data] control thread has finished
[2025-12-16 12:58:00] 2025-12-16 11:56:57,206 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 12:58:00] 2025-12-16 11:56:57,343 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 12:58:00] 2025-12-16 11:56:57,367 | INFO     | [payload] failed_post thread has finished
[2025-12-16 12:58:00] 2025-12-16 11:56:57,380 | INFO     | all job control threads have been joined
[2025-12-16 12:58:00] 2025-12-16 11:56:57,527 | INFO     | [payload] control thread has finished
[2025-12-16 12:58:00] 2025-12-16 11:56:57,822 | INFO     | [job] queue monitor thread has finished
[2025-12-16 12:58:00] 2025-12-16 11:56:57,912 | INFO     | [data] copytool_out thread has finished
[2025-12-16 12:58:00] 2025-12-16 11:56:57,999 | INFO     | [job] validate thread has finished
[2025-12-16 12:58:00] 2025-12-16 11:56:58,244 | INFO     | [data] copytool_in thread has finished
[2025-12-16 12:58:00] 2025-12-16 11:56:58,261 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 12:58:00] 2025-12-16 11:56:58,386 | INFO     | [job] control thread has finished
[2025-12-16 12:58:00] 2025-12-16 11:56:58,715 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 12:58:00] 2025-12-16 11:57:02,724 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 12:58:00] 2025-12-16 11:57:06,566 | INFO     | job.realtimelogging is not enabled
[2025-12-16 12:58:00] 2025-12-16 11:57:07,572 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 12:58:00] 2025-12-16 11:57:25,799 | INFO     | PID=988 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-12-16 12:58:00] 2025-12-16 11:57:25,799 | INFO     | .. there are 9 such processes running
[2025-12-16 12:58:00] 2025-12-16 11:57:25,800 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 12:58:00] 2025-12-16 11:57:25,800 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 12:58:00] 2025-12-16 11:57:25,800 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 12:58:00] 2025-12-16 11:57:50,442 | INFO     | [monitor] cgroup control has ended
[2025-12-16 12:58:00] 2025-12-16 11:57:50,819 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139687365375808)>', '<ExcThread(monitor, started 139686630651648)>']
[2025-12-16 12:58:00] 2025-12-16 11:57:50,946 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 12:58:00] 2025-12-16 11:57:50,946 | INFO     | [monitor] control thread has ended
[2025-12-16 12:58:00] 2025-12-16 11:57:55,844 | INFO     | all workflow threads have been joined
[2025-12-16 12:58:00] 2025-12-16 11:57:55,844 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 12:58:00] 2025-12-16 11:57:55,844 | INFO     | traces error code: 0
[2025-12-16 12:58:00] 2025-12-16 11:57:55,845 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 12:58:00] 2025-12-16 11:57:56,041 [wrapper] ==== pilot stdout END ====
[2025-12-16 12:58:00] 2025-12-16 11:57:56,067 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 12:58:00] 2025-12-16 11:57:56,105 [wrapper] pilotpid: 988
[2025-12-16 12:58:00] 2025-12-16 11:57:56,168 [wrapper] Pilot exit status: 0
[2025-12-16 12:58:00] 2025-12-16 11:57:56,594 [wrapper] pandaids: 6929808829
[2025-12-16 12:58:00] 2025-12-16 11:57:57,389 [wrapper] cleanup supervisor_pilot 10991 989
[2025-12-16 12:58:00] 2025-12-16 11:57:57,433 [wrapper] Test setup, not cleaning
[2025-12-16 12:58:00] 2025-12-16 11:57:57,516 [wrapper] apfmon messages muted
[2025-12-16 12:58:00] 2025-12-16 11:57:57,583 [wrapper] ==== wrapper stdout END ====
[2025-12-16 12:58:00] 2025-12-16 11:57:57,627 [wrapper] ==== wrapper stderr END ====
[2025-12-16 12:58:00]  *** Error codes and diagnostics ***
[2025-12-16 12:58:00]     "exeErrorCode": 0,
[2025-12-16 12:58:00]     "exeErrorDiag": "",
[2025-12-16 12:58:00]     "pilotErrorCode": 0,
[2025-12-16 12:58:00]     "pilotErrorDiag": "",
[2025-12-16 12:58:00]  *** Listing of results directory ***
[2025-12-16 12:58:00] total 452308
[2025-12-16 12:58:00] -rw-r--r--. 1 boinc boinc    579449 Dec 15 19:24 pilot3.tar.gz
[2025-12-16 12:58:00] -rwx------. 1 boinc boinc     36322 Dec 15 19:28 runpilot2-wrapper.sh
[2025-12-16 12:58:00] -rw-r--r--. 1 boinc boinc      5112 Dec 15 19:31 queuedata.json
[2025-12-16 12:58:00] -rw-r--r--. 1 boinc boinc       100 Dec 16 06:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 12:58:00] -rwxr-xr-x. 1 boinc boinc      7986 Dec 16 06:50 run_atlas
[2025-12-16 12:58:00] -rw-r--r--. 1 boinc boinc       105 Dec 16 06:50 job.xml
[2025-12-16 12:58:00] -rw-r--r--. 1 boinc boinc      6393 Dec 16 06:50 init_data.xml
[2025-12-16 12:58:00] -rw-r--r--. 2 boinc boinc 223990613 Dec 16 06:50 EVNT.47898824._000103.pool.root.1
[2025-12-16 12:58:00] -rw-r--r--. 2 boinc boinc     15847 Dec 16 06:50 start_atlas.sh
[2025-12-16 12:58:00] drwxrwx--x. 2 boinc boinc        68 Dec 16 06:50 shared
[2025-12-16 12:58:00] -rw-r--r--. 2 boinc boinc    592384 Dec 16 06:50 input.tar.gz
[2025-12-16 12:58:00] -rw-r--r--. 1 boinc boinc         0 Dec 16 06:50 boinc_lockfile
[2025-12-16 12:58:00] -rw-r--r--. 1 boinc boinc      2514 Dec 16 06:51 pandaJob.out
[2025-12-16 12:58:00] -rw-------. 1 boinc boinc    994531 Dec 16 06:54 agis_schedconf.cvmfs.json
[2025-12-16 12:58:00] drwx------. 5 boinc boinc      4096 Dec 16 06:54 pilot3
[2025-12-16 12:58:00] -rw-------. 1 boinc boinc 228356636 Dec 16 12:55 HITS.47898826._002613.pool.root.1
[2025-12-16 12:58:00] -rw-r--r--. 1 boinc boinc       531 Dec 16 12:55 boinc_task_state.xml
[2025-12-16 12:58:00] -rw-------. 1 boinc boinc      1016 Dec 16 12:55 memory_monitor_summary.json
[2025-12-16 12:58:00] -rw-------. 1 boinc boinc   1516240 Dec 16 12:55 agis_ddmendpoints.agis.ALL.json
[2025-12-16 12:58:00] -rw-------. 1 boinc boinc    557395 Dec 16 12:55 log.47898826._002613.job.log.tgz.1
[2025-12-16 12:58:00] -rw-------. 1 boinc boinc        95 Dec 16 12:56 pilot_heartbeat.json
[2025-12-16 12:58:00] -rw-------. 1 boinc boinc      7776 Dec 16 12:56 heartbeat.json
[2025-12-16 12:58:00] -rw-r--r--. 1 boinc boinc      8192 Dec 16 12:57 boinc_mmap_file
[2025-12-16 12:58:00] -rw-r--r--. 1 boinc boinc        28 Dec 16 12:57 wrapper_checkpoint.txt
[2025-12-16 12:58:00] -rw-------. 1 boinc boinc      4954 Dec 16 12:57 pilotlog.txt
[2025-12-16 12:58:00] -rw-------. 1 boinc boinc   2899533 Dec 16 12:57 log.47898826._002613.job.log.1
[2025-12-16 12:58:00] -rw-------. 1 boinc boinc       357 Dec 16 12:57 output.list
[2025-12-16 12:58:00] -rw-r--r--. 1 boinc boinc       620 Dec 16 12:57 runtime_log
[2025-12-16 12:58:00] -rw-------. 1 boinc boinc   3471360 Dec 16 12:57 result.tar.gz
[2025-12-16 12:58:00] -rw-------. 1 boinc boinc       658 Dec 16 12:57 vGsKDmPUSp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmd9TKDmY9oIJo.diag
[2025-12-16 12:58:00] -rw-r--r--. 1 boinc boinc      8817 Dec 16 12:57 runtime_log.err
[2025-12-16 12:58:00] -rw-r--r--. 1 boinc boinc     21026 Dec 16 12:58 stderr.txt
[2025-12-16 12:58:00] HITS file was successfully produced:
[2025-12-16 12:58:00] -rw-------. 1 boinc boinc 228356636 Dec 16 12:55 shared/HITS.pool.root.1
[2025-12-16 12:58:00]  *** Contents of shared directory: ***
[2025-12-16 12:58:00] total 445740
[2025-12-16 12:58:00] -rw-r--r--. 2 boinc boinc 223990613 Dec 16 06:50 ATLAS.root_0
[2025-12-16 12:58:00] -rw-r--r--. 2 boinc boinc     15847 Dec 16 06:50 start_atlas.sh
[2025-12-16 12:58:00] -rw-r--r--. 2 boinc boinc    592384 Dec 16 06:50 input.tar.gz
[2025-12-16 12:58:00] -rw-------. 1 boinc boinc 228356636 Dec 16 12:55 HITS.pool.root.1
[2025-12-16 12:58:00] -rw-------. 1 boinc boinc   3471360 Dec 16 12:57 result.tar.gz
12:58:02 (29609): run_atlas exited; CPU time 81167.306879
12:58:02 (29609): called boinc_finish(0)

</stderr_txt>
]]>

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