Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:13:26 (25128): wrapper (7.7.26015): starting
18:13:26 (25128): wrapper: running run_atlas (--nthreads 12)
[2025-12-15 18:13:26] Arguments: --nthreads 12
[2025-12-15 18:13:26] Threads: 12
[2025-12-15 18:13:26] Checking for CVMFS
[2025-12-15 18:13:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 18:13:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 18:13:27] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 18:13:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 18:13:27] 2.11.2.0 2984 315641 91756 154050 2 56 16363969 20275201 1 130560 1 140575101 99.974 17727796 14917 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-15 18:13:27] CVMFS is ok
[2025-12-15 18:13:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 18:13:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 18:13:27] Further information can be found at the LHC@home message board.
[2025-12-15 18:13:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 18:13:27] Checking for apptainer binary...
[2025-12-15 18:13:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 18:13:27] Running /usr/bin/apptainer --version
[2025-12-15 18:13:27] apptainer version 1.3.2-1.el7
[2025-12-15 18:13:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 18:13:28] c-205-26.aglt2.org
[2025-12-15 18:13:28] apptainer works
[2025-12-15 18:13:28] Set ATHENA_PROC_NUMBER=12
[2025-12-15 18:13:28] Set ATHENA_CORE_NUMBER=12
[2025-12-15 18:13:28] Starting ATLAS job with PandaID=6929962527
[2025-12-15 18:13:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 19:53:59]  *** The last 200 lines of the pilot log: ***
[2025-12-15 19:53:59]  lfn=log.47898763._017707.job.log.tgz.1
[2025-12-15 19:53:59]  mtime=0
[2025-12-15 19:53:59]  protocol_id=None
[2025-12-15 19:53:59]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-15 19:53:59]  replicas=None
[2025-12-15 19:53:59]  scope=mc23_13p6TeV
[2025-12-15 19:53:59]  status=None
[2025-12-15 19:53:59]  status_code=0
[2025-12-15 19:53:59]  storage_token=
[2025-12-15 19:53:59]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929962527/log.47898763._017707.job.log.tgz.1
[2025-12-15 19:53:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9e/72/log.47898763._017707.job.log.tgz.1
[2025-12-15 19:53:59]  workdir=None
[2025-12-15 19:53:59] ]
[2025-12-15 19:53:59] 2025-12-16 00:52:49,570 | INFO     | transferring file log.47898763._017707.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929962527/log.47898763._017707.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-15 19:53:59] 2025-12-16 00:52:49,570 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929962527/log.47898763._017707.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898763._017707.job
[2025-12-15 19:53:59] 2025-12-16 00:52:49,593 | INFO     | adding to output.list: log.47898763._017707.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9e/72/log.47898763._017707.job.log.tg
[2025-12-15 19:53:59] 2025-12-16 00:52:49,594 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-15 19:53:59] 2025-12-16 00:52:49,594 | INFO     | summary of transferred files:
[2025-12-15 19:53:59] 2025-12-16 00:52:49,594 | INFO     |  -- lfn=log.47898763._017707.job.log.tgz.1, status_code=0, status=transferred
[2025-12-15 19:53:59] 2025-12-16 00:52:49,595 | INFO     | stage-out finished correctly
[2025-12-15 19:53:59] 2025-12-16 00:52:50,126 | INFO     | monitor loop #441: job 0:6929962527 is in state 'finished'
[2025-12-15 19:53:59] 2025-12-16 00:52:50,127 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 19:53:59] 2025-12-16 00:52:50,638 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-15 19:53:59] 2025-12-16 00:52:50,719 | INFO     | job 6929962527 has state=finished
[2025-12-15 19:53:59] 2025-12-16 00:52:50,719 | INFO     | preparing for final server update for job 6929962527 in state='finished'
[2025-12-15 19:53:59] 2025-12-16 00:52:50,720 | INFO     | this job has now completed (state=finished)
[2025-12-15 19:53:59] 2025-12-16 00:52:50,720 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-15 19:53:59] 2025-12-16 00:52:50,720 | INFO     | log transfer has been attempted: DONE
[2025-12-15 19:53:59] 2025-12-16 00:52:50,720 | INFO     | job 6929962527 has finished - writing final server update
[2025-12-15 19:53:59] 2025-12-16 00:52:50,720 | INFO     | total number of processed events: 400 (read)
[2025-12-15 19:53:59] 2025-12-16 00:52:50,722 | INFO     | executing command: lscpu
[2025-12-15 19:53:59] 2025-12-16 00:52:50,750 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-15 19:53:59] 2025-12-16 00:52:50,896 | INFO     | time since job start (5947s) is within the limit (174528.0s)
[2025-12-15 19:53:59] 2025-12-16 00:52:52,630 | INFO     | monitor loop #442: job 0:6929962527 is in state 'finished'
[2025-12-15 19:53:59] 2025-12-16 00:52:52,630 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 19:53:59] 2025-12-16 00:52:52,902 | INFO     | time since job start (5949s) is within the limit (174528.0s)
[2025-12-15 19:53:59] 2025-12-16 00:52:54,907 | INFO     | time since job start (5951s) is within the limit (174528.0s)
[2025-12-15 19:53:59] 2025-12-16 00:52:55,132 | INFO     | monitor loop #443: job 0:6929962527 is in state 'finished'
[2025-12-15 19:53:59] 2025-12-16 00:52:55,133 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 19:53:59] 2025-12-16 00:52:55,478 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-15 19:53:59] 2025-12-16 00:52:55,482 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-12-15 19:53:59] 2025-12-16 00:52:55,484 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929962527/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 19:53:59] 2025-12-16 00:52:55,485 | INFO     | extracted standard info from prmon json
[2025-12-15 19:53:59] 2025-12-16 00:52:55,486 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 19:53:59] 2025-12-16 00:52:55,486 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 19:53:59] 2025-12-16 00:52:55,486 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-15 19:53:59] 2025-12-16 00:52:55,486 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 19:53:59] 2025-12-16 00:52:55,488 | INFO     | fitting pss+swap vs Time
[2025-12-15 19:53:59] 2025-12-16 00:52:55,488 | INFO     | sum of square deviations: 226022842.5
[2025-12-15 19:53:59] 2025-12-16 00:52:55,489 | INFO     | sum of deviations: -1405409530.4999995
[2025-12-15 19:53:59] 2025-12-16 00:52:55,489 | INFO     | mean x: 1765843472.5
[2025-12-15 19:53:59] 2025-12-16 00:52:55,489 | INFO     | mean y: 2717100.011111111
[2025-12-15 19:53:59] 2025-12-16 00:52:55,489 | INFO     | intersect: 10982727873.137787
[2025-12-15 19:53:59] 2025-12-16 00:52:55,489 | INFO     | chi2: 0.020456762632362888
[2025-12-15 19:53:59] 2025-12-16 00:52:55,489 | INFO     | current memory leak: -6.22 B/s (using 90 data points, chi2=0.02)
[2025-12-15 19:53:59] 2025-12-16 00:52:55,490 | INFO     | could have reported an average CPU frequency of 2134 MHz (7 samples)
[2025-12-15 19:53:59] 2025-12-16 00:52:55,490 | INFO     | ..............................
[2025-12-15 19:53:59] 2025-12-16 00:52:55,490 | INFO     | . Timing measurements:
[2025-12-15 19:53:59] 2025-12-16 00:52:55,490 | INFO     | . get job = 0 s
[2025-12-15 19:53:59] 2025-12-16 00:52:55,490 | INFO     | . initial setup = 2 s
[2025-12-15 19:53:59] 2025-12-16 00:52:55,490 | INFO     | . payload setup = 7 s
[2025-12-15 19:53:59] 2025-12-16 00:52:55,490 | INFO     | . stage-in = 0 s
[2025-12-15 19:53:59] 2025-12-16 00:52:55,490 | INFO     | . payload execution = 5917 s
[2025-12-15 19:53:59] 2025-12-16 00:52:55,490 | INFO     | . stage-out = 0 s
[2025-12-15 19:53:59] 2025-12-16 00:52:55,491 | INFO     | . log creation = 0 s
[2025-12-15 19:53:59] 2025-12-16 00:52:55,491 | INFO     | ..............................
[2025-12-15 19:53:59] 2025-12-16 00:52:55,924 | INFO     | 
[2025-12-15 19:53:59] 2025-12-16 00:52:55,925 | INFO     | job summary report
[2025-12-15 19:53:59] 2025-12-16 00:52:55,925 | INFO     | --------------------------------------------------
[2025-12-15 19:53:59] 2025-12-16 00:52:55,925 | INFO     | PanDA job id: 6929962527
[2025-12-15 19:53:59] 2025-12-16 00:52:55,925 | INFO     | task id: 47898763
[2025-12-15 19:53:59] 2025-12-16 00:52:55,925 | INFO     | errors: (none)
[2025-12-15 19:53:59] 2025-12-16 00:52:55,925 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-15 19:53:59] 2025-12-16 00:52:55,926 | INFO     | pilot state: finished 
[2025-12-15 19:53:59] 2025-12-16 00:52:55,926 | INFO     | transexitcode: 0
[2025-12-15 19:53:59] 2025-12-16 00:52:55,926 | INFO     | exeerrorcode: 0
[2025-12-15 19:53:59] 2025-12-16 00:52:55,926 | INFO     | exeerrordiag: 
[2025-12-15 19:53:59] 2025-12-16 00:52:55,926 | INFO     | exitcode: 0
[2025-12-15 19:53:59] 2025-12-16 00:52:55,926 | INFO     | exitmsg: OK
[2025-12-15 19:53:59] 2025-12-16 00:52:55,926 | INFO     | cpuconsumptiontime: 65971 s
[2025-12-15 19:53:59] 2025-12-16 00:52:55,927 | INFO     | nevents: 400
[2025-12-15 19:53:59] 2025-12-16 00:52:55,927 | INFO     | neventsw: 0
[2025-12-15 19:53:59] 2025-12-16 00:52:55,927 | INFO     | pid: 2952
[2025-12-15 19:53:59] 2025-12-16 00:52:55,927 | INFO     | pgrp: 2952
[2025-12-15 19:53:59] 2025-12-16 00:52:55,927 | INFO     | corecount: 12
[2025-12-15 19:53:59] 2025-12-16 00:52:55,927 | INFO     | event service: False
[2025-12-15 19:53:59] 2025-12-16 00:52:55,928 | INFO     | sizes: {0: 2283787, 1: 2283986, 5: 2284248, 11: 2284304, 5928: 2310998, 5930: 2319996, 5931: 2320180, 5936: 2320374}
[2025-12-15 19:53:59] 2025-12-16 00:52:55,928 | INFO     | --------------------------------------------------
[2025-12-15 19:53:59] 2025-12-16 00:52:55,928 | INFO     | 
[2025-12-15 19:53:59] 2025-12-16 00:52:55,928 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-15 19:53:59] 2025-12-16 00:52:55,955 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-15 19:53:59] 2025-12-16 00:52:55,956 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-15 19:53:59] 2025-12-16 00:52:55,956 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 19:53:59] 2025-12-16 00:52:55,956 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 19:53:59] 2025-12-16 00:52:55,956 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 19:53:59] 2025-12-16 00:52:55,956 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 19:53:59] 2025-12-16 00:52:55,957 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 19:53:59] 2025-12-16 00:52:55,957 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 19:53:59] 2025-12-16 00:52:55,957 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 19:53:59] 2025-12-16 00:52:55,957 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 19:53:59] 2025-12-16 00:52:55,957 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 19:53:59] 2025-12-16 00:52:55,957 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 19:53:59] 2025-12-16 00:52:55,958 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 19:53:59] 2025-12-16 00:52:55,958 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 19:53:59] 2025-12-16 00:52:55,958 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 19:53:59] 2025-12-16 00:52:55,958 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 19:53:59] 2025-12-16 00:52:55,958 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 19:53:59] 2025-12-16 00:52:55,958 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 19:53:59] 2025-12-16 00:52:55,959 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 19:53:59] 2025-12-16 00:52:55,959 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 19:53:59] 2025-12-16 00:52:55,959 | INFO     | job 6929962527 has completed (purged errors)
[2025-12-15 19:53:59] 2025-12-16 00:52:55,959 | INFO     | overall cleanup function is called
[2025-12-15 19:53:59] 2025-12-16 00:52:56,965 | INFO     | --- collectZombieJob: --- 10, [2952]
[2025-12-15 19:53:59] 2025-12-16 00:52:56,966 | INFO     | zombie collector waiting for pid 2952
[2025-12-15 19:53:59] 2025-12-16 00:52:56,966 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 19:53:59] 2025-12-16 00:52:56,966 | INFO     | collected zombie processes
[2025-12-15 19:53:59] 2025-12-16 00:52:56,967 | INFO     | will attempt to kill all subprocesses of pid=2952
[2025-12-15 19:53:59] 2025-12-16 00:52:57,062 | INFO     | process IDs to be killed: [2952] (in reverse order)
[2025-12-15 19:53:59] 2025-12-16 00:52:57,118 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 19:53:59] 2025-12-16 00:52:57,118 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 19:53:59] 2025-12-16 00:52:57,121 | INFO     | did not find any defunct processes belonging to 2952
[2025-12-15 19:53:59] 2025-12-16 00:52:57,125 | INFO     | did not find any defunct processes belonging to 2952
[2025-12-15 19:53:59] 2025-12-16 00:52:57,125 | INFO     | ready for new job
[2025-12-15 19:53:59] 2025-12-16 00:52:57,125 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 19:53:59] 2025-12-16 00:52:57,127 | INFO     | ***************************************
[2025-12-15 19:53:59] 2025-12-16 00:52:57,127 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 19:53:59] 2025-12-16 00:52:57,128 | INFO     | ***************************************
[2025-12-15 19:53:59] 2025-12-16 00:52:57,128 | INFO     | 
[2025-12-15 19:53:59] 2025-12-16 00:52:57,128 | INFO     | architecture information:
[2025-12-15 19:53:59] 2025-12-16 00:52:57,129 | INFO     | executing command: cat /etc/os-release
[2025-12-15 19:53:59] 2025-12-16 00:52:57,145 | INFO     | cat /etc/os-release:
[2025-12-15 19:53:59] NAME="CentOS Linux"
[2025-12-15 19:53:59] VERSION="7 (Core)"
[2025-12-15 19:53:59] ID="centos"
[2025-12-15 19:53:59] ID_LIKE="rhel fedora"
[2025-12-15 19:53:59] VERSION_ID="7"
[2025-12-15 19:53:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 19:53:59] ANSI_COLOR="0;31"
[2025-12-15 19:53:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 19:53:59] HOME_URL="https://www.centos.org/"
[2025-12-15 19:53:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 19:53:59] 
[2025-12-15 19:53:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 19:53:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 19:53:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 19:53:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 19:53:59] 
[2025-12-15 19:53:59] 2025-12-16 00:52:57,145 | INFO     | ***************************************
[2025-12-15 19:53:59] 2025-12-16 00:52:57,648 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-15 19:53:59] 2025-12-16 00:52:57,666 | INFO     | sufficient remaining disk space (29316087808 B)
[2025-12-15 19:53:59] 2025-12-16 00:52:57,667 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 19:53:59] 2025-12-16 00:52:57,667 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 19:53:59] 2025-12-16 00:52:57,667 | INFO     | update_server=False
[2025-12-15 19:53:59] 2025-12-16 00:52:57,667 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 19:53:59] 2025-12-16 00:52:57,667 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 19:53:59] 2025-12-16 00:52:57,669 | INFO     | all payload control threads have been joined
[2025-12-15 19:53:59] 2025-12-16 00:52:57,689 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 19:53:59] 2025-12-16 00:52:58,544 | INFO     | all data control threads have been joined
[2025-12-15 19:53:59] 2025-12-16 00:52:58,641 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 19:53:59] 2025-12-16 00:52:58,641 | INFO     | aborting loop
[2025-12-15 19:53:59] 2025-12-16 00:52:58,670 | INFO     | [payload] control thread has finished
[2025-12-15 19:53:59] 2025-12-16 00:52:58,673 | INFO     | [job] retrieve thread has finished
[2025-12-15 19:53:59] 2025-12-16 00:52:58,971 | INFO     | [payload] validate_post thread has finished
[2025-12-15 19:53:59] 2025-12-16 00:52:59,037 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 19:53:59] 2025-12-16 00:52:59,038 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 19:53:59] 2025-12-16 00:52:59,044 | INFO     | [data] copytool_in thread has finished
[2025-12-15 19:53:59] 2025-12-16 00:52:59,215 | INFO     | all job control threads have been joined
[2025-12-15 19:53:59] 2025-12-16 00:52:59,237 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 19:53:59] 2025-12-16 00:52:59,530 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 19:53:59] 2025-12-16 00:52:59,550 | INFO     | [data] control thread has finished
[2025-12-15 19:53:59] 2025-12-16 00:52:59,647 | INFO     | [job] job monitor thread has finished
[2025-12-15 19:53:59] 2025-12-16 00:52:59,694 | INFO     | [data] copytool_out thread has finished
[2025-12-15 19:53:59] 2025-12-16 00:52:59,990 | INFO     | [payload] failed_post thread has finished
[2025-12-15 19:53:59] 2025-12-16 00:53:00,167 | INFO     | [job] validate thread has finished
[2025-12-15 19:53:59] 2025-12-16 00:53:00,221 | INFO     | [job] control thread has finished
[2025-12-15 19:53:59] 2025-12-16 00:53:00,583 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 19:53:59] 2025-12-16 00:53:01,588 | INFO     | [job] queue monitor thread has finished
[2025-12-15 19:53:59] 2025-12-16 00:53:01,673 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 19:53:59] 2025-12-16 00:53:28,111 | INFO     | PID=28819 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-15 19:53:59] 2025-12-16 00:53:28,112 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 19:53:59] 2025-12-16 00:53:28,112 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 19:53:59] 2025-12-16 00:53:28,112 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 19:53:59] 2025-12-16 00:53:53,146 | INFO     | [monitor] cgroup control has ended
[2025-12-15 19:53:59] 2025-12-16 00:53:54,082 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139768675571520)>', '<ExcThread(monitor, started 139767916238592)>']
[2025-12-15 19:53:59] 2025-12-16 00:53:54,236 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 19:53:59] 2025-12-16 00:53:54,236 | INFO     | [monitor] control thread has ended
[2025-12-15 19:53:59] 2025-12-16 00:53:59,107 | INFO     | all workflow threads have been joined
[2025-12-15 19:53:59] 2025-12-16 00:53:59,107 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 19:53:59] 2025-12-16 00:53:59,110 | INFO     | traces error code: 0
[2025-12-15 19:53:59] 2025-12-16 00:53:59,110 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 19:53:59] 2025-12-16 00:53:59,210 [wrapper] ==== pilot stdout END ====
[2025-12-15 19:53:59] 2025-12-16 00:53:59,214 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 19:53:59] 2025-12-16 00:53:59,218 [wrapper] pilotpid: 28819
[2025-12-15 19:53:59] 2025-12-16 00:53:59,222 [wrapper] Pilot exit status: 0
[2025-12-15 19:53:59] 2025-12-16 00:53:59,236 [wrapper] pandaids: 6929962527
[2025-12-15 19:53:59] 2025-12-16 00:53:59,282 [wrapper] cleanup supervisor_pilot  1912 28820
[2025-12-15 19:53:59] 2025-12-16 00:53:59,286 [wrapper] Test setup, not cleaning
[2025-12-15 19:53:59] 2025-12-16 00:53:59,290 [wrapper] apfmon messages muted
[2025-12-15 19:53:59] 2025-12-16 00:53:59,294 [wrapper] ==== wrapper stdout END ====
[2025-12-15 19:53:59] 2025-12-16 00:53:59,298 [wrapper] ==== wrapper stderr END ====
[2025-12-15 19:53:59]  *** Error codes and diagnostics ***
[2025-12-15 19:53:59]     "exeErrorCode": 0,
[2025-12-15 19:53:59]     "exeErrorDiag": "",
[2025-12-15 19:53:59]     "pilotErrorCode": 0,
[2025-12-15 19:53:59]     "pilotErrorDiag": "",
[2025-12-15 19:53:59]  *** Listing of results directory ***
[2025-12-15 19:53:59] total 440516
[2025-12-15 19:53:59] -rw-r--r-- 1 boincer umatlas    579449 Dec 15 13:24 pilot3.tar.gz
[2025-12-15 19:53:59] -rwx------ 1 boincer umatlas     36322 Dec 15 13:26 runpilot2-wrapper.sh
[2025-12-15 19:53:59] -rw-r--r-- 1 boincer umatlas      5112 Dec 15 13:27 queuedata.json
[2025-12-15 19:53:59] -rw-r--r-- 1 boincer umatlas       100 Dec 15 18:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 19:53:59] -rwxr-xr-x 1 boincer umatlas      7986 Dec 15 18:13 run_atlas
[2025-12-15 19:53:59] -rw-r--r-- 1 boincer umatlas       105 Dec 15 18:13 job.xml
[2025-12-15 19:53:59] -rw-r--r-- 2 boincer umatlas 226673682 Dec 15 18:13 EVNT.47898761._000706.pool.root.1
[2025-12-15 19:53:59] -rw-r--r-- 2 boincer umatlas     15847 Dec 15 18:13 start_atlas.sh
[2025-12-15 19:53:59] drwxrwx--x 2 boincer umatlas      4096 Dec 15 18:13 shared
[2025-12-15 19:53:59] -rw-r--r-- 2 boincer umatlas    592401 Dec 15 18:13 input.tar.gz
[2025-12-15 19:53:59] -rw-r--r-- 1 boincer umatlas         0 Dec 15 18:13 boinc_lockfile
[2025-12-15 19:53:59] -rw-r--r-- 1 boincer umatlas      2508 Dec 15 18:13 pandaJob.out
[2025-12-15 19:53:59] -rw------- 1 boincer umatlas        57 Dec 15 18:13 setup.sh.local
[2025-12-15 19:53:59] -rw------- 1 boincer umatlas    994547 Dec 15 18:13 agis_schedconf.cvmfs.json
[2025-12-15 19:53:59] -rw------- 1 boincer umatlas   1516240 Dec 15 18:13 agis_ddmendpoints.agis.ALL.json
[2025-12-15 19:53:59] drwx------ 5 boincer umatlas      4096 Dec 15 18:13 pilot3
[2025-12-15 19:53:59] -rw-r--r-- 1 boincer umatlas      5953 Dec 15 19:48 init_data.xml
[2025-12-15 19:53:59] -rw------- 1 boincer umatlas 217969557 Dec 15 19:52 HITS.47898763._017707.pool.root.1
[2025-12-15 19:53:59] -rw-r--r-- 1 boincer umatlas       529 Dec 15 19:52 boinc_task_state.xml
[2025-12-15 19:53:59] -rw------- 1 boincer umatlas      1048 Dec 15 19:52 memory_monitor_summary.json
[2025-12-15 19:53:59] -rw------- 1 boincer umatlas    416731 Dec 15 19:52 log.47898763._017707.job.log.tgz.1
[2025-12-15 19:53:59] -rw------- 1 boincer umatlas      7850 Dec 15 19:52 heartbeat.json
[2025-12-15 19:53:59] -rw------- 1 boincer umatlas        95 Dec 15 19:53 pilot_heartbeat.json
[2025-12-15 19:53:59] -rw-r--r-- 1 boincer umatlas        27 Dec 15 19:53 wrapper_checkpoint.txt
[2025-12-15 19:53:59] -rw-r--r-- 1 boincer umatlas      8192 Dec 15 19:53 boinc_mmap_file
[2025-12-15 19:53:59] -rw------- 1 boincer umatlas      4746 Dec 15 19:53 pilotlog.txt
[2025-12-15 19:53:59] -rw------- 1 boincer umatlas    845031 Dec 15 19:53 log.47898763._017707.job.log.1
[2025-12-15 19:53:59] -rw------- 1 boincer umatlas       357 Dec 15 19:53 output.list
[2025-12-15 19:53:59] -rw-r--r-- 1 boincer umatlas       620 Dec 15 19:53 runtime_log
[2025-12-15 19:53:59] -rw------- 1 boincer umatlas   1280000 Dec 15 19:53 result.tar.gz
[2025-12-15 19:53:59] -rw-r--r-- 1 boincer umatlas      9344 Dec 15 19:53 runtime_log.err
[2025-12-15 19:53:59] -rw------- 1 boincer umatlas       659 Dec 15 19:53 9GwNDmvRSp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmU3TKDmwHVQen.diag
[2025-12-15 19:53:59] -rw-r--r-- 1 boincer umatlas     21701 Dec 15 19:53 stderr.txt
[2025-12-15 19:53:59] HITS file was successfully produced:
[2025-12-15 19:53:59] -rw------- 1 boincer umatlas 217969557 Dec 15 19:52 shared/HITS.pool.root.1
[2025-12-15 19:53:59]  *** Contents of shared directory: ***
[2025-12-15 19:53:59] total 436080
[2025-12-15 19:53:59] -rw-r--r-- 2 boincer umatlas 226673682 Dec 15 18:13 ATLAS.root_0
[2025-12-15 19:53:59] -rw-r--r-- 2 boincer umatlas     15847 Dec 15 18:13 start_atlas.sh
[2025-12-15 19:53:59] -rw-r--r-- 2 boincer umatlas    592401 Dec 15 18:13 input.tar.gz
[2025-12-15 19:53:59] -rw------- 1 boincer umatlas 217969557 Dec 15 19:52 HITS.pool.root.1
[2025-12-15 19:53:59] -rw------- 1 boincer umatlas   1280000 Dec 15 19:53 result.tar.gz
19:54:01 (25128): run_atlas exited; CPU time 65953.407052
19:54:01 (25128): called boinc_finish(0)

</stderr_txt>
]]>

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