Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:30:46 (1920275): wrapper (7.7.26015): starting
09:30:46 (1920275): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 09:30:46] Arguments: --nthreads 4
[2025-12-16 09:30:46] Threads: 4
[2025-12-16 09:30:46] Checking for CVMFS
[2025-12-16 09:30:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 09:30:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 09:30:47] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 09:30:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 09:30:47] 2.9.2.0 382260 4186 92908 154064 2 57 25198505 36864001 0 130560 0 3306379 99.991 152169 17535 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-16 09:30:47] CVMFS is ok
[2025-12-16 09:30:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 09:30:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 09:30:47] Further information can be found at the LHC@home message board.
[2025-12-16 09:30:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 09:30:47] Checking for apptainer binary...
[2025-12-16 09:30:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 09:30:47] Running /usr/bin/apptainer --version
[2025-12-16 09:30:47] apptainer version 1.4.1-1.1
[2025-12-16 09:30:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 09:30:47] atlasA237
[2025-12-16 09:30:47] apptainer works
[2025-12-16 09:30:47] Set ATHENA_PROC_NUMBER=4
[2025-12-16 09:30:47] Set ATHENA_CORE_NUMBER=4
[2025-12-16 09:30:47] Starting ATLAS job with PandaID=6929962479
[2025-12-16 09:30:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 11:10:07]  *** The last 200 lines of the pilot log: ***
[2025-12-16 11:10:07] 2025-12-16 10:09:10,134 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 11:10:07] 2025-12-16 10:09:10,134 | INFO     | update_server=False
[2025-12-16 11:10:07] 2025-12-16 10:09:10,134 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 11:10:07] 2025-12-16 10:09:10,135 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 11:10:07] 2025-12-16 10:09:10,142 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-16 11:10:07] 2025-12-16 10:09:10,142 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-16 11:10:07] 2025-12-16 10:09:10,143 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 11:10:07] 2025-12-16 10:09:10,143 | INFO     | will abort loop
[2025-12-16 11:10:07] 2025-12-16 10:09:10,453 | INFO     | all payload control threads have been joined
[2025-12-16 11:10:07] 2025-12-16 10:09:10,541 | INFO     | all data control threads have been joined
[2025-12-16 11:10:07] 2025-12-16 10:09:10,930 | INFO     | all job control threads have been joined
[2025-12-16 11:10:07] 2025-12-16 10:09:11,140 | INFO     | [job] retrieve thread has finished
[2025-12-16 11:10:07] 2025-12-16 10:09:11,140 | INFO     | [job] queue monitor thread has finished
[2025-12-16 11:10:07] 2025-12-16 10:09:11,148 | INFO     | [job] job monitor thread has finished
[2025-12-16 11:10:07] 2025-12-16 10:09:11,213 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 11:10:07] 2025-12-16 10:09:11,349 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 11:10:07] 2025-12-16 10:09:11,459 | INFO     | [payload] control thread has finished
[2025-12-16 11:10:07] 2025-12-16 10:09:11,547 | INFO     | [data] control thread has finished
[2025-12-16 11:10:07] 2025-12-16 10:09:11,609 | INFO     | [data] copytool_in thread has finished
[2025-12-16 11:10:07] 2025-12-16 10:09:11,927 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 11:10:07] 2025-12-16 10:09:11,936 | INFO     | [job] control thread has finished
[2025-12-16 11:10:07] 2025-12-16 10:09:12,114 | INFO     | [payload] failed_post thread has finished
[2025-12-16 11:10:07] 2025-12-16 10:09:12,446 | INFO     | [job] validate thread has finished
[2025-12-16 11:10:07] 2025-12-16 10:09:12,567 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 11:10:07] 2025-12-16 10:09:12,667 | INFO     | [payload] validate_post thread has finished
[2025-12-16 11:10:07] 2025-12-16 10:09:13,033 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 11:10:07] 2025-12-16 10:09:13,355 | INFO     | [data] copytool_out thread has finished
[2025-12-16 11:10:07] 2025-12-16 10:09:17,040 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 11:10:07] 2025-12-16 10:09:20,887 | INFO     | job.realtimelogging is not enabled
[2025-12-16 11:10:07] 2025-12-16 10:09:21,893 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 11:10:07] 2025-12-16 10:09:40,439 | INFO     | PID=1924071 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 11:10:07] 2025-12-16 10:09:40,440 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 11:10:07] 2025-12-16 10:09:40,440 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 11:10:07] 2025-12-16 10:09:40,440 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 11:10:07] 2025-12-16 10:10:01,110 | INFO     | [monitor] cgroup control has ended
[2025-12-16 11:10:07] 2025-12-16 10:10:01,834 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140235446417216)>', '<ExcThread(monitor, started 140234348021504)>']
[2025-12-16 11:10:07] 2025-12-16 10:10:02,554 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 11:10:07] 2025-12-16 10:10:02,554 | INFO     | [monitor] control thread has ended
[2025-12-16 11:10:07] 2025-12-16 10:10:06,860 | INFO     | all workflow threads have been joined
[2025-12-16 11:10:07] 2025-12-16 10:10:06,860 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 11:10:07] 2025-12-16 10:10:06,861 | INFO     | traces error code: 0
[2025-12-16 11:10:07] 2025-12-16 10:10:06,861 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 11:10:07] 2025-12-16 10:10:06,930 [wrapper] ==== pilot stdout END ====
[2025-12-16 11:10:07] 2025-12-16 10:10:06,933 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 11:10:07] 2025-12-16 10:10:06,937 [wrapper] pilotpid: 1924071
[2025-12-16 11:10:07] 2025-12-16 10:10:06,941 [wrapper] Pilot exit status: 0
[2025-12-16 11:10:07] 2025-12-16 10:10:06,952 [wrapper] pandaids: 6929962479
[2025-12-16 11:10:07] 2025-12-16 10:10:06,978 [wrapper] cleanup supervisor_pilot 1949294 1924072
[2025-12-16 11:10:07] 2025-12-16 10:10:06,982 [wrapper] Test setup, not cleaning
[2025-12-16 11:10:07] 2025-12-16 10:10:06,985 [wrapper] apfmon messages muted
[2025-12-16 11:10:07] 2025-12-16 10:10:06,989 [wrapper] ==== wrapper stdout END ====
[2025-12-16 11:10:07] 2025-12-16 10:10:06,992 [wrapper] ==== wrapper stderr END ====
[2025-12-16 11:10:07]  *** Error codes and diagnostics ***
[2025-12-16 11:10:07]     "exeErrorCode": 0,
[2025-12-16 11:10:07]     "exeErrorDiag": "",
[2025-12-16 11:10:07]     "pilotErrorCode": 0,
[2025-12-16 11:10:07]     "pilotErrorDiag": "",
[2025-12-16 11:10:07]  *** Listing of results directory ***
[2025-12-16 11:10:07] total 438880
[2025-12-16 11:10:07] -rw-r--r-- 1 boinc boinc    579449 Dec 15 19:24 pilot3.tar.gz
[2025-12-16 11:10:07] -rwx------ 1 boinc boinc     36322 Dec 15 19:26 runpilot2-wrapper.sh
[2025-12-16 11:10:07] -rw-r--r-- 1 boinc boinc      5112 Dec 15 19:27 queuedata.json
[2025-12-16 11:10:07] -rw-r--r-- 1 boinc boinc       100 Dec 16 09:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 11:10:07] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 09:30 run_atlas
[2025-12-16 11:10:07] -rw-r--r-- 1 boinc boinc       105 Dec 16 09:30 job.xml
[2025-12-16 11:10:07] -rw-r--r-- 2 boinc boinc 222445002 Dec 16 09:30 EVNT.47898761._000704.pool.root.1
[2025-12-16 11:10:07] -rw-r--r-- 2 boinc boinc    592398 Dec 16 09:30 input.tar.gz
[2025-12-16 11:10:07] -rw-r--r-- 2 boinc boinc     15847 Dec 16 09:30 start_atlas.sh
[2025-12-16 11:10:07] drwxrwx--x 2 boinc boinc      4096 Dec 16 09:30 shared
[2025-12-16 11:10:07] -rw-r--r-- 1 boinc boinc         0 Dec 16 09:30 boinc_setup_complete
[2025-12-16 11:10:07] -rw-r--r-- 1 boinc boinc      6372 Dec 16 09:30 init_data.xml
[2025-12-16 11:10:07] -rw-r--r-- 1 boinc boinc         0 Dec 16 09:30 boinc_lockfile
[2025-12-16 11:10:07] -rw-r--r-- 1 boinc boinc      2508 Dec 16 09:30 pandaJob.out
[2025-12-16 11:10:07] -rw------- 1 boinc boinc    994528 Dec 16 09:30 agis_schedconf.cvmfs.json
[2025-12-16 11:10:07] -rw------- 1 boinc boinc   1516240 Dec 16 09:30 agis_ddmendpoints.agis.ALL.json
[2025-12-16 11:10:07] drwx------ 5 boinc boinc      4096 Dec 16 09:30 pilot3
[2025-12-16 11:10:07] -rw------- 1 boinc boinc 220769048 Dec 16 11:08 HITS.47898763._017659.pool.root.1
[2025-12-16 11:10:07] -rw-r--r-- 1 boinc boinc       530 Dec 16 11:08 boinc_task_state.xml
[2025-12-16 11:10:07] -rw------- 1 boinc boinc      1023 Dec 16 11:08 memory_monitor_summary.json
[2025-12-16 11:10:07] -rw------- 1 boinc boinc    297514 Dec 16 11:09 log.47898763._017659.job.log.tgz.1
[2025-12-16 11:10:07] -rw------- 1 boinc boinc      7772 Dec 16 11:09 heartbeat.json
[2025-12-16 11:10:07] -rw------- 1 boinc boinc        95 Dec 16 11:09 pilot_heartbeat.json
[2025-12-16 11:10:07] -rw-r--r-- 1 boinc boinc      8192 Dec 16 11:09 boinc_mmap_file
[2025-12-16 11:10:07] -rw-r--r-- 1 boinc boinc        27 Dec 16 11:09 wrapper_checkpoint.txt
[2025-12-16 11:10:07] -rw------- 1 boinc boinc      5010 Dec 16 11:10 pilotlog.txt
[2025-12-16 11:10:07] -rw------- 1 boinc boinc    855021 Dec 16 11:10 log.47898763._017659.job.log.1
[2025-12-16 11:10:07] -rw------- 1 boinc boinc       357 Dec 16 11:10 output.list
[2025-12-16 11:10:07] -rw-r--r-- 1 boinc boinc       620 Dec 16 11:10 runtime_log
[2025-12-16 11:10:07] -rw------- 1 boinc boinc   1167360 Dec 16 11:10 result.tar.gz
[2025-12-16 11:10:07] -rw-r--r-- 1 boinc boinc      8912 Dec 16 11:10 runtime_log.err
[2025-12-16 11:10:07] -rw------- 1 boinc boinc       662 Dec 16 11:10 ULpMDmvRSp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm52TKDmKNzrSn.diag
[2025-12-16 11:10:07] -rw-r--r-- 1 boinc boinc      7845 Dec 16 11:10 stderr.txt
[2025-12-16 11:10:07] HITS file was successfully produced:
[2025-12-16 11:10:07] -rw------- 1 boinc boinc 220769048 Dec 16 11:08 shared/HITS.pool.root.1
[2025-12-16 11:10:07]  *** Contents of shared directory: ***
[2025-12-16 11:10:07] total 434572
[2025-12-16 11:10:07] -rw-r--r-- 2 boinc boinc 222445002 Dec 16 09:30 ATLAS.root_0
[2025-12-16 11:10:07] -rw-r--r-- 2 boinc boinc    592398 Dec 16 09:30 input.tar.gz
[2025-12-16 11:10:07] -rw-r--r-- 2 boinc boinc     15847 Dec 16 09:30 start_atlas.sh
[2025-12-16 11:10:07] -rw------- 1 boinc boinc 220769048 Dec 16 11:08 HITS.pool.root.1
[2025-12-16 11:10:07] -rw------- 1 boinc boinc   1167360 Dec 16 11:10 result.tar.gz
11:10:08 (1920275): run_atlas exited; CPU time 22350.279720
11:10:08 (1920275): called boinc_finish(0)

</stderr_txt>
]]>

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