Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:06:32 (1932950): wrapper (7.7.26015): starting
14:06:32 (1932950): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 14:06:32] Arguments: --nthreads 4
[2025-12-16 14:06:32] Threads: 4
[2025-12-16 14:06:32] Checking for CVMFS
[2025-12-16 14:06:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 14:06:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 14:06:32] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 14:06:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 14:06:33] 2.9.2.0 386248 4656 97380 154071 3 57 36761333 36864001 0 130560 0 3752900 99.991 166773 11096 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-16 14:06:33] CVMFS is ok
[2025-12-16 14:06:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 14:06:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 14:06:33] Further information can be found at the LHC@home message board.
[2025-12-16 14:06:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 14:06:33] Checking for apptainer binary...
[2025-12-16 14:06:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 14:06:33] Running /usr/bin/apptainer --version
[2025-12-16 14:06:33] apptainer version 1.4.1-1.1
[2025-12-16 14:06:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 14:06:33] thA314
[2025-12-16 14:06:33] apptainer works
[2025-12-16 14:06:33] Set ATHENA_PROC_NUMBER=4
[2025-12-16 14:06:33] Set ATHENA_CORE_NUMBER=4
[2025-12-16 14:06:33] Starting ATLAS job with PandaID=6929962848
[2025-12-16 14:06:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 15:25:52]  *** The last 200 lines of the pilot log: ***
[2025-12-16 15:25:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-16 15:25:52]  replicas=None
[2025-12-16 15:25:52]  scope=mc23_13p6TeV
[2025-12-16 15:25:52]  status=None
[2025-12-16 15:25:52]  status_code=0
[2025-12-16 15:25:52]  storage_token=
[2025-12-16 15:25:52]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6929962848/log.47886831._009464.job.log.tgz.1
[2025-12-16 15:25:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8e/30/log.47886831._009464.job.log.tgz.1
[2025-12-16 15:25:52]  workdir=None
[2025-12-16 15:25:52] ]
[2025-12-16 15:25:52] 2025-12-16 14:24:58,498 | INFO     | transferring file log.47886831._009464.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6929962848/log.47886831._009464.job.log.tgz.1 to /local/data/boinc/
[2025-12-16 15:25:52] 2025-12-16 14:24:58,498 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6929962848/log.47886831._009464.job.log.tgz.1 /local/data/boinc/slots/0/log.47886831._0094
[2025-12-16 15:25:52] 2025-12-16 14:24:58,518 | INFO     | adding to output.list: log.47886831._009464.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8e/30/log.47886831._009464.job.log.tg
[2025-12-16 15:25:52] 2025-12-16 14:24:58,518 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-16 15:25:52] 2025-12-16 14:24:58,518 | INFO     | summary of transferred files:
[2025-12-16 15:25:52] 2025-12-16 14:24:58,518 | INFO     |  -- lfn=log.47886831._009464.job.log.tgz.1, status_code=0, status=transferred
[2025-12-16 15:25:52] 2025-12-16 14:24:58,518 | INFO     | stage-out finished correctly
[2025-12-16 15:25:52] 2025-12-16 14:25:00,260 | INFO     | time since job start (4699s) is within the limit (174528.0s)
[2025-12-16 15:25:52] 2025-12-16 14:25:00,363 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-16 15:25:52] 2025-12-16 14:25:00,845 | WARNING  | process 1943312 can no longer be monitored (due to stat problems) - aborting
[2025-12-16 15:25:52] 2025-12-16 14:25:00,845 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6929962848/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 15:25:52] 2025-12-16 14:25:00,895 | INFO     | number of running child processes to parent process 1943312: 1
[2025-12-16 15:25:52] 2025-12-16 14:25:00,895 | INFO     | maximum number of monitored processes: 6
[2025-12-16 15:25:52] 2025-12-16 14:25:02,182 | INFO     | job 6929962848 has state=finished
[2025-12-16 15:25:52] 2025-12-16 14:25:02,182 | INFO     | preparing for final server update for job 6929962848 in state='finished'
[2025-12-16 15:25:52] 2025-12-16 14:25:02,183 | INFO     | this job has now completed (state=finished)
[2025-12-16 15:25:52] 2025-12-16 14:25:02,183 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-16 15:25:52] 2025-12-16 14:25:02,183 | INFO     | log transfer has been attempted: DONE
[2025-12-16 15:25:52] 2025-12-16 14:25:02,183 | INFO     | job 6929962848 has finished - writing final server update
[2025-12-16 15:25:52] 2025-12-16 14:25:02,183 | INFO     | total number of processed events: 400 (read)
[2025-12-16 15:25:52] 2025-12-16 14:25:02,184 | INFO     | executing command: lscpu
[2025-12-16 15:25:52] 2025-12-16 14:25:02,207 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 15:25:52] 2025-12-16 14:25:02,266 | INFO     | time since job start (4701s) is within the limit (174528.0s)
[2025-12-16 15:25:52] 2025-12-16 14:25:03,398 | INFO     | monitor loop #361: job 0:6929962848 is in state 'finished'
[2025-12-16 15:25:52] 2025-12-16 14:25:03,398 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 15:25:52] 2025-12-16 14:25:04,272 | INFO     | time since job start (4703s) is within the limit (174528.0s)
[2025-12-16 15:25:52] 2025-12-16 14:25:05,901 | INFO     | monitor loop #362: job 0:6929962848 is in state 'finished'
[2025-12-16 15:25:52] 2025-12-16 14:25:05,901 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 15:25:52] 2025-12-16 14:25:06,277 | INFO     | time since job start (4705s) is within the limit (174528.0s)
[2025-12-16 15:25:52] 2025-12-16 14:25:07,009 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 15:25:52] 2025-12-16 14:25:07,011 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3341.9670625000003
[2025-12-16 15:25:52] 2025-12-16 14:25:07,012 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6929962848/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 15:25:52] 2025-12-16 14:25:07,012 | INFO     | extracted standard info from prmon json
[2025-12-16 15:25:52] 2025-12-16 14:25:07,012 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 15:25:52] 2025-12-16 14:25:07,012 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 15:25:52] 2025-12-16 14:25:07,013 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 15:25:52] 2025-12-16 14:25:07,013 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 15:25:52] 2025-12-16 14:25:07,013 | INFO     | fitting pss+swap vs Time
[2025-12-16 15:25:52] 2025-12-16 14:25:07,013 | INFO     | sum of square deviations: 106336877.5
[2025-12-16 15:25:52] 2025-12-16 14:25:07,014 | INFO     | sum of deviations: -709670431.5
[2025-12-16 15:25:52] 2025-12-16 14:25:07,014 | INFO     | mean x: 1765892834.5
[2025-12-16 15:25:52] 2025-12-16 14:25:07,014 | INFO     | mean y: 2392925.5
[2025-12-16 15:25:52] 2025-12-16 14:25:07,014 | INFO     | intersect: 11787598202.40286
[2025-12-16 15:25:52] 2025-12-16 14:25:07,014 | INFO     | chi2: 0.04648975983714894
[2025-12-16 15:25:52] 2025-12-16 14:25:07,014 | INFO     | current memory leak: -6.67 B/s (using 70 data points, chi2=0.05)
[2025-12-16 15:25:52] 2025-12-16 14:25:07,014 | INFO     | could have reported an average CPU frequency of 3754 MHz (6 samples)
[2025-12-16 15:25:52] 2025-12-16 14:25:07,014 | INFO     | ..............................
[2025-12-16 15:25:52] 2025-12-16 14:25:07,014 | INFO     | . Timing measurements:
[2025-12-16 15:25:52] 2025-12-16 14:25:07,014 | INFO     | . get job = 0 s
[2025-12-16 15:25:52] 2025-12-16 14:25:07,014 | INFO     | . initial setup = 1 s
[2025-12-16 15:25:52] 2025-12-16 14:25:07,014 | INFO     | . payload setup = 4 s
[2025-12-16 15:25:52] 2025-12-16 14:25:07,014 | INFO     | . stage-in = 0 s
[2025-12-16 15:25:52] 2025-12-16 14:25:07,014 | INFO     | . payload execution = 4674 s
[2025-12-16 15:25:52] 2025-12-16 14:25:07,014 | INFO     | . stage-out = 0 s
[2025-12-16 15:25:52] 2025-12-16 14:25:07,014 | INFO     | . log creation = 0 s
[2025-12-16 15:25:52] 2025-12-16 14:25:07,014 | INFO     | ..............................
[2025-12-16 15:25:52] 2025-12-16 14:25:07,054 | INFO     | 
[2025-12-16 15:25:52] 2025-12-16 14:25:07,054 | INFO     | job summary report
[2025-12-16 15:25:52] 2025-12-16 14:25:07,054 | INFO     | --------------------------------------------------
[2025-12-16 15:25:52] 2025-12-16 14:25:07,054 | INFO     | PanDA job id: 6929962848
[2025-12-16 15:25:52] 2025-12-16 14:25:07,054 | INFO     | task id: 47886831
[2025-12-16 15:25:52] 2025-12-16 14:25:07,055 | INFO     | errors: (none)
[2025-12-16 15:25:52] 2025-12-16 14:25:07,055 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 15:25:52] 2025-12-16 14:25:07,055 | INFO     | pilot state: finished 
[2025-12-16 15:25:52] 2025-12-16 14:25:07,055 | INFO     | transexitcode: 0
[2025-12-16 15:25:52] 2025-12-16 14:25:07,055 | INFO     | exeerrorcode: 0
[2025-12-16 15:25:52] 2025-12-16 14:25:07,055 | INFO     | exeerrordiag: 
[2025-12-16 15:25:52] 2025-12-16 14:25:07,055 | INFO     | exitcode: 0
[2025-12-16 15:25:52] 2025-12-16 14:25:07,055 | INFO     | exitmsg: OK
[2025-12-16 15:25:52] 2025-12-16 14:25:07,055 | INFO     | cpuconsumptiontime: 17702 s
[2025-12-16 15:25:52] 2025-12-16 14:25:07,055 | INFO     | nevents: 400
[2025-12-16 15:25:52] 2025-12-16 14:25:07,055 | INFO     | neventsw: 0
[2025-12-16 15:25:52] 2025-12-16 14:25:07,055 | INFO     | pid: 1943312
[2025-12-16 15:25:52] 2025-12-16 14:25:07,055 | INFO     | pgrp: 1943312
[2025-12-16 15:25:52] 2025-12-16 14:25:07,055 | INFO     | corecount: 4
[2025-12-16 15:25:52] 2025-12-16 14:25:07,055 | INFO     | event service: False
[2025-12-16 15:25:52] 2025-12-16 14:25:07,055 | INFO     | sizes: {0: 2283986, 4: 2284248, 11: 2284276, 4682: 2310591, 4683: 2319595, 4684: 2319651, 4691: 2319973}
[2025-12-16 15:25:52] 2025-12-16 14:25:07,055 | INFO     | --------------------------------------------------
[2025-12-16 15:25:52] 2025-12-16 14:25:07,055 | INFO     | 
[2025-12-16 15:25:52] 2025-12-16 14:25:07,055 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-12-16 15:25:52] 2025-12-16 14:25:07,075 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 15:25:52] 2025-12-16 14:25:07,076 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 15:25:52] 2025-12-16 14:25:07,076 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 15:25:52] 2025-12-16 14:25:07,076 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 15:25:52] 2025-12-16 14:25:07,076 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 15:25:52] 2025-12-16 14:25:07,076 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 15:25:52] 2025-12-16 14:25:07,076 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 15:25:52] 2025-12-16 14:25:07,076 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 15:25:52] 2025-12-16 14:25:07,076 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 15:25:52] 2025-12-16 14:25:07,076 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 15:25:52] 2025-12-16 14:25:07,076 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 15:25:52] 2025-12-16 14:25:07,076 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 15:25:52] 2025-12-16 14:25:07,076 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 15:25:52] 2025-12-16 14:25:07,076 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 15:25:52] 2025-12-16 14:25:07,076 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 15:25:52] 2025-12-16 14:25:07,076 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 15:25:52] 2025-12-16 14:25:07,076 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 15:25:52] 2025-12-16 14:25:07,076 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 15:25:52] 2025-12-16 14:25:07,076 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 15:25:52] 2025-12-16 14:25:07,076 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 15:25:52] 2025-12-16 14:25:07,076 | INFO     | job 6929962848 has completed (purged errors)
[2025-12-16 15:25:52] 2025-12-16 14:25:07,076 | INFO     | overall cleanup function is called
[2025-12-16 15:25:52] 2025-12-16 14:25:08,083 | INFO     | --- collectZombieJob: --- 10, [1943312]
[2025-12-16 15:25:52] 2025-12-16 14:25:08,084 | INFO     | zombie collector waiting for pid 1943312
[2025-12-16 15:25:52] 2025-12-16 14:25:08,084 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 15:25:52] 2025-12-16 14:25:08,084 | INFO     | collected zombie processes
[2025-12-16 15:25:52] 2025-12-16 14:25:08,084 | INFO     | will attempt to kill all subprocesses of pid=1943312
[2025-12-16 15:25:52] 2025-12-16 14:25:08,139 | INFO     | process IDs to be killed: [1943312] (in reverse order)
[2025-12-16 15:25:52] 2025-12-16 14:25:08,178 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 15:25:52] 2025-12-16 14:25:08,178 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 15:25:52] 2025-12-16 14:25:08,180 | INFO     | did not find any defunct processes belonging to 1943312
[2025-12-16 15:25:52] 2025-12-16 14:25:08,182 | INFO     | did not find any defunct processes belonging to 1943312
[2025-12-16 15:25:52] 2025-12-16 14:25:08,182 | INFO     | ready for new job
[2025-12-16 15:25:52] 2025-12-16 14:25:08,182 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 15:25:52] 2025-12-16 14:25:08,183 | INFO     | ***************************************
[2025-12-16 15:25:52] 2025-12-16 14:25:08,183 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 15:25:52] 2025-12-16 14:25:08,183 | INFO     | ***************************************
[2025-12-16 15:25:52] 2025-12-16 14:25:08,183 | INFO     | 
[2025-12-16 15:25:52] 2025-12-16 14:25:08,184 | INFO     | architecture information:
[2025-12-16 15:25:52] 2025-12-16 14:25:08,184 | INFO     | executing command: cat /etc/os-release
[2025-12-16 15:25:52] 2025-12-16 14:25:08,199 | INFO     | cat /etc/os-release:
[2025-12-16 15:25:52] NAME="CentOS Linux"
[2025-12-16 15:25:52] VERSION="7 (Core)"
[2025-12-16 15:25:52] ID="centos"
[2025-12-16 15:25:52] ID_LIKE="rhel fedora"
[2025-12-16 15:25:52] VERSION_ID="7"
[2025-12-16 15:25:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 15:25:52] ANSI_COLOR="0;31"
[2025-12-16 15:25:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 15:25:52] HOME_URL="https://www.centos.org/"
[2025-12-16 15:25:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 15:25:52] 
[2025-12-16 15:25:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 15:25:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 15:25:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 15:25:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 15:25:52] 
[2025-12-16 15:25:52] 2025-12-16 14:25:08,199 | INFO     | ***************************************
[2025-12-16 15:25:52] 2025-12-16 14:25:08,703 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-16 15:25:52] 2025-12-16 14:25:08,722 | INFO     | sufficient remaining disk space (221918527488 B)
[2025-12-16 15:25:52] 2025-12-16 14:25:08,722 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 15:25:52] 2025-12-16 14:25:08,722 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 15:25:52] 2025-12-16 14:25:08,722 | INFO     | update_server=False
[2025-12-16 15:25:52] 2025-12-16 14:25:08,722 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 15:25:52] 2025-12-16 14:25:08,722 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 15:25:52] 2025-12-16 14:25:09,073 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 15:25:52] 2025-12-16 14:25:09,178 | INFO     | all data control threads have been joined
[2025-12-16 15:25:52] 2025-12-16 14:25:09,279 | INFO     | all payload control threads have been joined
[2025-12-16 15:25:52] 2025-12-16 14:25:09,410 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 15:25:52] 2025-12-16 14:25:09,411 | INFO     | aborting loop
[2025-12-16 15:25:52] 2025-12-16 14:25:09,728 | INFO     | [job] retrieve thread has finished
[2025-12-16 15:25:52] 2025-12-16 14:25:09,728 | INFO     | [job] queue monitor thread has finished
[2025-12-16 15:25:52] 2025-12-16 14:25:09,840 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 15:25:52] 2025-12-16 14:25:09,921 | INFO     | [data] copytool_in thread has finished
[2025-12-16 15:25:52] 2025-12-16 14:25:09,974 | INFO     | all job control threads have been joined
[2025-12-16 15:25:52] 2025-12-16 14:25:10,184 | INFO     | [data] control thread has finished
[2025-12-16 15:25:52] 2025-12-16 14:25:10,284 | INFO     | [payload] control thread has finished
[2025-12-16 15:25:52] 2025-12-16 14:25:10,396 | INFO     | [payload] validate_post thread has finished
[2025-12-16 15:25:52] 2025-12-16 14:25:10,416 | INFO     | [job] job monitor thread has finished
[2025-12-16 15:25:52] 2025-12-16 14:25:10,661 | INFO     | [job] validate thread has finished
[2025-12-16 15:25:52] 2025-12-16 14:25:10,714 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 15:25:52] 2025-12-16 14:25:10,792 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 15:25:52] 2025-12-16 14:25:10,797 | INFO     | [payload] failed_post thread has finished
[2025-12-16 15:25:52] 2025-12-16 14:25:10,913 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 15:25:52] 2025-12-16 14:25:10,980 | INFO     | [job] control thread has finished
[2025-12-16 15:25:52] 2025-12-16 14:25:11,080 | INFO     | [data] copytool_out thread has finished
[2025-12-16 15:25:52] 2025-12-16 14:25:11,157 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 15:25:52] 2025-12-16 14:25:14,920 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 15:25:52] 2025-12-16 14:25:39,408 | INFO     | PID=1936737 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 15:25:52] 2025-12-16 14:25:39,409 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 15:25:52] 2025-12-16 14:25:39,409 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 15:25:52] 2025-12-16 14:25:39,409 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 15:25:52] 2025-12-16 14:25:46,926 | INFO     | [monitor] cgroup control has ended
[2025-12-16 15:25:52] 2025-12-16 14:25:47,662 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140247578892096)>', '<ExcThread(monitor, started 140246754768640)>']
[2025-12-16 15:25:52] 2025-12-16 14:25:48,456 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 15:25:52] 2025-12-16 14:25:48,456 | INFO     | [monitor] control thread has ended
[2025-12-16 15:25:52] 2025-12-16 14:25:52,688 | INFO     | all workflow threads have been joined
[2025-12-16 15:25:52] 2025-12-16 14:25:52,688 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 15:25:52] 2025-12-16 14:25:52,689 | INFO     | traces error code: 0
[2025-12-16 15:25:52] 2025-12-16 14:25:52,690 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 15:25:52] 2025-12-16 14:25:52,771 [wrapper] ==== pilot stdout END ====
[2025-12-16 15:25:52] 2025-12-16 14:25:52,775 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 15:25:52] 2025-12-16 14:25:52,779 [wrapper] pilotpid: 1936737
[2025-12-16 15:25:52] 2025-12-16 14:25:52,783 [wrapper] Pilot exit status: 0
[2025-12-16 15:25:52] 2025-12-16 14:25:52,795 [wrapper] pandaids: 6929962848
[2025-12-16 15:25:52] 2025-12-16 14:25:52,821 [wrapper] cleanup supervisor_pilot 1957920 1936738
[2025-12-16 15:25:52] 2025-12-16 14:25:52,825 [wrapper] Test setup, not cleaning
[2025-12-16 15:25:52] 2025-12-16 14:25:52,830 [wrapper] apfmon messages muted
[2025-12-16 15:25:52] 2025-12-16 14:25:52,833 [wrapper] ==== wrapper stdout END ====
[2025-12-16 15:25:52] 2025-12-16 14:25:52,838 [wrapper] ==== wrapper stderr END ====
[2025-12-16 15:25:52]  *** Error codes and diagnostics ***
[2025-12-16 15:25:52]     "exeErrorCode": 0,
[2025-12-16 15:25:52]     "exeErrorDiag": "",
[2025-12-16 15:25:52]     "pilotErrorCode": 0,
[2025-12-16 15:25:52]     "pilotErrorDiag": "",
[2025-12-16 15:25:52]  *** Listing of results directory ***
[2025-12-16 15:25:52] total 343552
[2025-12-16 15:25:52] -rw-r--r-- 1 boinc boinc    579449 Dec 15 19:24 pilot3.tar.gz
[2025-12-16 15:25:52] -rwx------ 1 boinc boinc     36322 Dec 15 19:25 runpilot2-wrapper.sh
[2025-12-16 15:25:52] -rw-r--r-- 1 boinc boinc      5112 Dec 15 19:27 queuedata.json
[2025-12-16 15:25:52] -rw-r--r-- 1 boinc boinc       100 Dec 16 14:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 15:25:52] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 14:06 run_atlas
[2025-12-16 15:25:52] -rw-r--r-- 1 boinc boinc       105 Dec 16 14:06 job.xml
[2025-12-16 15:25:52] -rw-r--r-- 2 boinc boinc 189408708 Dec 16 14:06 EVNT.47886829._000374.pool.root.1
[2025-12-16 15:25:52] -rw-r--r-- 2 boinc boinc    592411 Dec 16 14:06 input.tar.gz
[2025-12-16 15:25:52] -rw-r--r-- 2 boinc boinc     15847 Dec 16 14:06 start_atlas.sh
[2025-12-16 15:25:52] drwxrwx--x 2 boinc boinc      4096 Dec 16 14:06 shared
[2025-12-16 15:25:52] -rw-r--r-- 1 boinc boinc         0 Dec 16 14:06 boinc_setup_complete
[2025-12-16 15:25:52] -rw-r--r-- 1 boinc boinc      6377 Dec 16 14:06 init_data.xml
[2025-12-16 15:25:52] -rw-r--r-- 1 boinc boinc         0 Dec 16 14:06 boinc_lockfile
[2025-12-16 15:25:52] -rw-r--r-- 1 boinc boinc      2534 Dec 16 14:06 pandaJob.out
[2025-12-16 15:25:52] -rw------- 1 boinc boinc    990993 Dec 16 14:06 agis_schedconf.cvmfs.json
[2025-12-16 15:25:52] -rw------- 1 boinc boinc   1516240 Dec 16 14:06 agis_ddmendpoints.agis.ALL.json
[2025-12-16 15:25:52] drwx------ 5 boinc boinc      4096 Dec 16 14:06 pilot3
[2025-12-16 15:25:52] -rw------- 1 boinc boinc 156585666 Dec 16 15:24 HITS.47886831._009464.pool.root.1
[2025-12-16 15:25:52] -rw-r--r-- 1 boinc boinc       529 Dec 16 15:24 boinc_task_state.xml
[2025-12-16 15:25:52] -rw------- 1 boinc boinc      1019 Dec 16 15:24 memory_monitor_summary.json
[2025-12-16 15:25:52] -rw------- 1 boinc boinc    249975 Dec 16 15:24 log.47886831._009464.job.log.tgz.1
[2025-12-16 15:25:52] -rw------- 1 boinc boinc      7748 Dec 16 15:25 heartbeat.json
[2025-12-16 15:25:52] -rw-r--r-- 1 boinc boinc      8192 Dec 16 15:25 boinc_mmap_file
[2025-12-16 15:25:52] -rw-r--r-- 1 boinc boinc        27 Dec 16 15:25 wrapper_checkpoint.txt
[2025-12-16 15:25:52] -rw------- 1 boinc boinc        95 Dec 16 15:25 pilot_heartbeat.json
[2025-12-16 15:25:52] -rw------- 1 boinc boinc      4752 Dec 16 15:25 pilotlog.txt
[2025-12-16 15:25:52] -rw------- 1 boinc boinc    692916 Dec 16 15:25 log.47886831._009464.job.log.1
[2025-12-16 15:25:52] -rw------- 1 boinc boinc       357 Dec 16 15:25 output.list
[2025-12-16 15:25:52] -rw-r--r-- 1 boinc boinc       620 Dec 16 15:25 runtime_log
[2025-12-16 15:25:52] -rw------- 1 boinc boinc    962560 Dec 16 15:25 result.tar.gz
[2025-12-16 15:25:52] -rw-r--r-- 1 boinc boinc      8897 Dec 16 15:25 runtime_log.err
[2025-12-16 15:25:52] -rw------- 1 boinc boinc       658 Dec 16 15:25 KovLDmlRSp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmC2TKDmh94iNn.diag
[2025-12-16 15:25:52] -rw-r--r-- 1 boinc boinc     21954 Dec 16 15:25 stderr.txt
[2025-12-16 15:25:52] HITS file was successfully produced:
[2025-12-16 15:25:52] -rw------- 1 boinc boinc 156585666 Dec 16 15:24 shared/HITS.pool.root.1
[2025-12-16 15:25:52]  *** Contents of shared directory: ***
[2025-12-16 15:25:52] total 339432
[2025-12-16 15:25:52] -rw-r--r-- 2 boinc boinc 189408708 Dec 16 14:06 ATLAS.root_0
[2025-12-16 15:25:52] -rw-r--r-- 2 boinc boinc    592411 Dec 16 14:06 input.tar.gz
[2025-12-16 15:25:52] -rw-r--r-- 2 boinc boinc     15847 Dec 16 14:06 start_atlas.sh
[2025-12-16 15:25:52] -rw------- 1 boinc boinc 156585666 Dec 16 15:24 HITS.pool.root.1
[2025-12-16 15:25:52] -rw------- 1 boinc boinc    962560 Dec 16 15:25 result.tar.gz
15:25:54 (1932950): run_atlas exited; CPU time 17719.564331
15:25:54 (1932950): called boinc_finish(0)

</stderr_txt>
]]>

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