Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:56:18 (21199): wrapper (7.7.26015): starting
05:56:18 (21199): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 05:56:18] Arguments: --nthreads 8
[2025-12-16 05:56:18] Threads: 8
[2025-12-16 05:56:18] Checking for CVMFS
[2025-12-16 05:56:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 05:56:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 05:56:20] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 05:56:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 05:56:21] 2.11.2.0 24088 404 57016 154058 3 100 23326018 25165824 1088 130560 0 160443 98.818 1285399 1172 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-16 05:56:21] CVMFS is ok
[2025-12-16 05:56:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 05:56:22] Checking for apptainer binary...
[2025-12-16 05:56:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 05:56:22] Running /usr/bin/apptainer --version
[2025-12-16 05:56:22] apptainer version 1.3.2-1.el7
[2025-12-16 05:56:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 05:57:00] cg-vwn483.simple-grid.lan
[2025-12-16 05:57:00] apptainer works
[2025-12-16 05:57:00] Set ATHENA_PROC_NUMBER=8
[2025-12-16 05:57:00] Set ATHENA_CORE_NUMBER=8
[2025-12-16 05:57:01] Starting ATLAS job with PandaID=6929783635
[2025-12-16 05:57:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/24 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 10:42:46]  *** The last 200 lines of the pilot log: ***
[2025-12-16 10:42:46] 2025-12-16 09:41:56,880 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-12-16 10:42:46] 2025-12-16 09:41:56,882 | INFO     | using path: /var/lib/boinc/slots/24/PanDA_Pilot-6929783635/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 10:42:46] 2025-12-16 09:41:56,883 | INFO     | extracted standard info from prmon json
[2025-12-16 10:42:46] 2025-12-16 09:41:56,883 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 10:42:46] 2025-12-16 09:41:56,883 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 10:42:46] 2025-12-16 09:41:56,883 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 10:42:46] 2025-12-16 09:41:56,883 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 10:42:46] 2025-12-16 09:41:56,889 | INFO     | fitting pss+swap vs Time
[2025-12-16 10:42:46] 2025-12-16 09:41:56,889 | INFO     | sum of square deviations: 5836025702.5
[2025-12-16 10:42:46] 2025-12-16 09:41:56,892 | INFO     | sum of deviations: 87349504673.0
[2025-12-16 10:42:46] 2025-12-16 09:41:56,892 | INFO     | mean x: 1765869887.5
[2025-12-16 10:42:46] 2025-12-16 09:41:56,892 | INFO     | mean y: 2464682.052631579
[2025-12-16 10:42:46] 2025-12-16 09:41:56,892 | INFO     | intersect: -26427826727.393272
[2025-12-16 10:42:46] 2025-12-16 09:41:56,893 | INFO     | chi2: 7.378192948142325
[2025-12-16 10:42:46] 2025-12-16 09:41:56,893 | INFO     | sum of square deviations: 5513070810.0
[2025-12-16 10:42:46] 2025-12-16 09:41:56,896 | INFO     | sum of deviations: 103533759201.00003
[2025-12-16 10:42:46] 2025-12-16 09:41:56,896 | INFO     | mean x: 1765869735.0
[2025-12-16 10:42:46] 2025-12-16 09:41:56,896 | INFO     | mean y: 2472197.375478927
[2025-12-16 10:42:46] 2025-12-16 09:41:56,896 | INFO     | intersect: -33160013506.998
[2025-12-16 10:42:46] 2025-12-16 09:41:56,896 | INFO     | chi2: 6.668768254655164
[2025-12-16 10:42:46] 2025-12-16 09:41:56,897 | INFO     | current chi2=6.668768254655164 (change=9.615155072161398 %)
[2025-12-16 10:42:46] 2025-12-16 09:41:56,897 | INFO     | right removable region: 260
[2025-12-16 10:42:46] 2025-12-16 09:41:56,897 | INFO     | sum of square deviations: 5513070810.0
[2025-12-16 10:42:46] 2025-12-16 09:41:56,900 | INFO     | sum of deviations: -6584907665.999998
[2025-12-16 10:42:46] 2025-12-16 09:41:56,900 | INFO     | mean x: 1765870040.0
[2025-12-16 10:42:46] 2025-12-16 09:41:56,900 | INFO     | mean y: 2509012.6168582374
[2025-12-16 10:42:46] 2025-12-16 09:41:56,900 | INFO     | intersect: 2111694902.713511
[2025-12-16 10:42:46] 2025-12-16 09:41:56,900 | INFO     | chi2: 2.468947315947629
[2025-12-16 10:42:46] 2025-12-16 09:41:56,901 | INFO     | current chi2=2.468947315947629 (change=66.53723569848823 %)
[2025-12-16 10:42:46] 2025-12-16 09:41:56,901 | INFO     | sum of square deviations: 5202255680.0
[2025-12-16 10:42:46] 2025-12-16 09:41:56,903 | INFO     | sum of deviations: -56292310482.0
[2025-12-16 10:42:46] 2025-12-16 09:41:56,903 | INFO     | mean x: 1765870192.5
[2025-12-16 10:42:46] 2025-12-16 09:41:56,903 | INFO     | mean y: 2533285.328125
[2025-12-16 10:42:46] 2025-12-16 09:41:56,903 | INFO     | intersect: 19110573962.62123
[2025-12-16 10:42:46] 2025-12-16 09:41:56,904 | INFO     | chi2: 0.8902663801296292
[2025-12-16 10:42:46] 2025-12-16 09:41:56,904 | INFO     | current chi2=0.8902663801296292 (change=63.94145900241991 %)
[2025-12-16 10:42:46] 2025-12-16 09:41:56,904 | INFO     | sum of square deviations: 4903347750.0
[2025-12-16 10:42:46] 2025-12-16 09:41:56,906 | INFO     | sum of deviations: -59059121032.0
[2025-12-16 10:42:46] 2025-12-16 09:41:56,907 | INFO     | mean x: 1765870345.0
[2025-12-16 10:42:46] 2025-12-16 09:41:56,907 | INFO     | mean y: 2534666.621513944
[2025-12-16 10:42:46] 2025-12-16 09:41:56,907 | INFO     | intersect: 21271829799.151035
[2025-12-16 10:42:46] 2025-12-16 09:41:56,908 | INFO     | chi2: 0.858371013311084
[2025-12-16 10:42:46] 2025-12-16 09:41:56,908 | INFO     | current chi2=0.858371013311084 (change=3.5826767729790063 %)
[2025-12-16 10:42:46] 2025-12-16 09:41:56,908 | INFO     | left removable region: 30
[2025-12-16 10:42:46] 2025-12-16 09:41:56,908 | INFO     | sum of square deviations: 3772712597.5
[2025-12-16 10:42:46] 2025-12-16 09:41:56,910 | INFO     | sum of deviations: -31130791361.99998
[2025-12-16 10:42:46] 2025-12-16 09:41:56,910 | INFO     | mean x: 1765870619.5
[2025-12-16 10:42:46] 2025-12-16 09:41:56,911 | INFO     | mean y: 2538481.2347826087
[2025-12-16 10:42:46] 2025-12-16 09:41:56,911 | INFO     | intersect: 14573738488.457214
[2025-12-16 10:42:46] 2025-12-16 09:41:56,911 | INFO     | chi2: 0.07123866976833702
[2025-12-16 10:42:46] 2025-12-16 09:41:56,911 | INFO     | current memory leak: -8.25 B/s (using 230 data points, chi2=0.07)
[2025-12-16 10:42:46] 2025-12-16 09:41:56,912 | INFO     | could have reported an average CPU frequency of 2249 MHz (12 samples)
[2025-12-16 10:42:46] 2025-12-16 09:41:56,912 | INFO     | ..............................
[2025-12-16 10:42:46] 2025-12-16 09:41:56,912 | INFO     | . Timing measurements:
[2025-12-16 10:42:46] 2025-12-16 09:41:56,912 | INFO     | . get job = 0 s
[2025-12-16 10:42:46] 2025-12-16 09:41:56,912 | INFO     | . initial setup = 7 s
[2025-12-16 10:42:46] 2025-12-16 09:41:56,912 | INFO     | . payload setup = 140 s
[2025-12-16 10:42:46] 2025-12-16 09:41:56,912 | INFO     | . stage-in = 0 s
[2025-12-16 10:42:46] 2025-12-16 09:41:56,912 | INFO     | . payload execution = 16373 s
[2025-12-16 10:42:46] 2025-12-16 09:41:56,913 | INFO     | . stage-out = 6 s
[2025-12-16 10:42:46] 2025-12-16 09:41:56,913 | INFO     | . log creation = 1 s
[2025-12-16 10:42:46] 2025-12-16 09:41:56,913 | INFO     | ..............................
[2025-12-16 10:42:46] 2025-12-16 09:41:57,350 | INFO     | 
[2025-12-16 10:42:46] 2025-12-16 09:41:57,350 | INFO     | job summary report
[2025-12-16 10:42:46] 2025-12-16 09:41:57,350 | INFO     | --------------------------------------------------
[2025-12-16 10:42:46] 2025-12-16 09:41:57,350 | INFO     | PanDA job id: 6929783635
[2025-12-16 10:42:46] 2025-12-16 09:41:57,350 | INFO     | task id: 47898763
[2025-12-16 10:42:46] 2025-12-16 09:41:57,350 | INFO     | errors: (none)
[2025-12-16 10:42:46] 2025-12-16 09:41:57,350 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 10:42:46] 2025-12-16 09:41:57,350 | INFO     | pilot state: finished 
[2025-12-16 10:42:46] 2025-12-16 09:41:57,351 | INFO     | transexitcode: 0
[2025-12-16 10:42:46] 2025-12-16 09:41:57,351 | INFO     | exeerrorcode: 0
[2025-12-16 10:42:46] 2025-12-16 09:41:57,351 | INFO     | exeerrordiag: 
[2025-12-16 10:42:46] 2025-12-16 09:41:57,351 | INFO     | exitcode: 0
[2025-12-16 10:42:46] 2025-12-16 09:41:57,351 | INFO     | exitmsg: OK
[2025-12-16 10:42:46] 2025-12-16 09:41:57,351 | INFO     | cpuconsumptiontime: 75309 s
[2025-12-16 10:42:46] 2025-12-16 09:41:57,351 | INFO     | nevents: 400
[2025-12-16 10:42:46] 2025-12-16 09:41:57,351 | INFO     | neventsw: 0
[2025-12-16 10:42:46] 2025-12-16 09:41:57,351 | INFO     | pid: 31457
[2025-12-16 10:42:46] 2025-12-16 09:41:57,351 | INFO     | pgrp: 31457
[2025-12-16 10:42:46] 2025-12-16 09:41:57,351 | INFO     | corecount: 8
[2025-12-16 10:42:46] 2025-12-16 09:41:57,351 | INFO     | event service: False
[2025-12-16 10:42:46] 2025-12-16 09:41:57,352 | INFO     | sizes: {0: 2283130, 1: 2283987, 12: 2283987, 23: 2284015, 33: 2284043, 44: 2284099, 55: 2284255, 66: 2284283, 76: 2284311, 87: 2284367, 98: 2284395, 109: 2284703, 
[2025-12-16 10:42:46] 2025-12-16 09:41:57,352 | INFO     | --------------------------------------------------
[2025-12-16 10:42:46] 2025-12-16 09:41:57,352 | INFO     | 
[2025-12-16 10:42:46] 2025-12-16 09:41:57,352 | INFO     | executing command: ls -lF /var/lib/boinc/slots/24
[2025-12-16 10:42:46] 2025-12-16 09:41:57,421 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 10:42:46] 2025-12-16 09:41:57,421 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 10:42:46] 2025-12-16 09:41:57,422 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 10:42:46] 2025-12-16 09:41:57,422 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 10:42:46] 2025-12-16 09:41:57,422 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 10:42:46] 2025-12-16 09:41:57,422 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 10:42:46] 2025-12-16 09:41:57,422 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 10:42:46] 2025-12-16 09:41:57,422 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 10:42:46] 2025-12-16 09:41:57,422 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 10:42:46] 2025-12-16 09:41:57,422 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 10:42:46] 2025-12-16 09:41:57,422 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 10:42:46] 2025-12-16 09:41:57,422 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 10:42:46] 2025-12-16 09:41:57,423 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 10:42:46] 2025-12-16 09:41:57,423 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 10:42:46] 2025-12-16 09:41:57,423 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 10:42:46] 2025-12-16 09:41:57,423 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 10:42:46] 2025-12-16 09:41:57,423 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 10:42:46] 2025-12-16 09:41:57,423 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 10:42:46] 2025-12-16 09:41:57,423 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 10:42:46] 2025-12-16 09:41:57,423 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 10:42:46] 2025-12-16 09:41:57,423 | INFO     | job 6929783635 has completed (purged errors)
[2025-12-16 10:42:46] 2025-12-16 09:41:57,423 | INFO     | overall cleanup function is called
[2025-12-16 10:42:46] 2025-12-16 09:41:58,432 | INFO     | --- collectZombieJob: --- 10, [31457]
[2025-12-16 10:42:46] 2025-12-16 09:41:58,432 | INFO     | zombie collector waiting for pid 31457
[2025-12-16 10:42:46] 2025-12-16 09:41:58,432 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 10:42:46] 2025-12-16 09:41:58,432 | INFO     | collected zombie processes
[2025-12-16 10:42:46] 2025-12-16 09:41:58,432 | INFO     | will attempt to kill all subprocesses of pid=31457
[2025-12-16 10:42:46] 2025-12-16 09:41:58,536 | INFO     | process IDs to be killed: [31457] (in reverse order)
[2025-12-16 10:42:46] 2025-12-16 09:41:59,164 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 10:42:46] 2025-12-16 09:41:59,165 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 10:42:46] 2025-12-16 09:41:59,168 | INFO     | did not find any defunct processes belonging to 31457
[2025-12-16 10:42:46] 2025-12-16 09:41:59,170 | INFO     | did not find any defunct processes belonging to 31457
[2025-12-16 10:42:46] 2025-12-16 09:41:59,171 | INFO     | ready for new job
[2025-12-16 10:42:46] 2025-12-16 09:41:59,171 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 10:42:46] 2025-12-16 09:41:59,173 | INFO     | ***************************************
[2025-12-16 10:42:46] 2025-12-16 09:41:59,173 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 10:42:46] 2025-12-16 09:41:59,173 | INFO     | ***************************************
[2025-12-16 10:42:46] 2025-12-16 09:41:59,173 | INFO     | 
[2025-12-16 10:42:46] 2025-12-16 09:41:59,174 | INFO     | pilot is running in a VM
[2025-12-16 10:42:46] 2025-12-16 09:41:59,174 | INFO     | architecture information:
[2025-12-16 10:42:46] 2025-12-16 09:41:59,175 | INFO     | executing command: cat /etc/os-release
[2025-12-16 10:42:46] 2025-12-16 09:41:59,436 | INFO     | cat /etc/os-release:
[2025-12-16 10:42:46] NAME="CentOS Linux"
[2025-12-16 10:42:46] VERSION="7 (Core)"
[2025-12-16 10:42:46] ID="centos"
[2025-12-16 10:42:46] ID_LIKE="rhel fedora"
[2025-12-16 10:42:46] VERSION_ID="7"
[2025-12-16 10:42:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 10:42:46] ANSI_COLOR="0;31"
[2025-12-16 10:42:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 10:42:46] HOME_URL="https://www.centos.org/"
[2025-12-16 10:42:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 10:42:46] 
[2025-12-16 10:42:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 10:42:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 10:42:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 10:42:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 10:42:46] 
[2025-12-16 10:42:46] 2025-12-16 09:41:59,436 | INFO     | ***************************************
[2025-12-16 10:42:46] 2025-12-16 09:41:59,941 | INFO     | executing command: df -mP /var/lib/boinc/slots/24
[2025-12-16 10:42:46] 2025-12-16 09:42:00,085 | INFO     | sufficient remaining disk space (495919824896 B)
[2025-12-16 10:42:46] 2025-12-16 09:42:00,086 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 10:42:46] 2025-12-16 09:42:00,086 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 10:42:46] 2025-12-16 09:42:00,086 | INFO     | update_server=False
[2025-12-16 10:42:46] 2025-12-16 09:42:00,086 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 10:42:46] 2025-12-16 09:42:00,092 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 10:42:46] 2025-12-16 09:42:00,228 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 10:42:46] 2025-12-16 09:42:00,430 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-16 10:42:46] 2025-12-16 09:42:00,430 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-16 10:42:46] 2025-12-16 09:42:00,430 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 10:42:46] 2025-12-16 09:42:00,430 | INFO     | will abort loop
[2025-12-16 10:42:46] 2025-12-16 09:42:00,797 | INFO     | all payload control threads have been joined
[2025-12-16 10:42:46] 2025-12-16 09:42:01,092 | INFO     | [job] retrieve thread has finished
[2025-12-16 10:42:46] 2025-12-16 09:42:01,120 | INFO     | all data control threads have been joined
[2025-12-16 10:42:46] 2025-12-16 09:42:01,225 | INFO     | all job control threads have been joined
[2025-12-16 10:42:46] 2025-12-16 09:42:01,425 | INFO     | [data] copytool_in thread has finished
[2025-12-16 10:42:46] 2025-12-16 09:42:01,436 | INFO     | [job] job monitor thread has finished
[2025-12-16 10:42:46] 2025-12-16 09:42:01,607 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 10:42:46] 2025-12-16 09:42:01,655 | INFO     | [payload] validate_post thread has finished
[2025-12-16 10:42:46] 2025-12-16 09:42:01,763 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 10:42:46] 2025-12-16 09:42:01,769 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 10:42:46] 2025-12-16 09:42:01,803 | INFO     | [payload] control thread has finished
[2025-12-16 10:42:46] 2025-12-16 09:42:02,038 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 10:42:46] 2025-12-16 09:42:02,126 | INFO     | [data] control thread has finished
[2025-12-16 10:42:46] 2025-12-16 09:42:02,170 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 10:42:46] 2025-12-16 09:42:02,230 | INFO     | [job] control thread has finished
[2025-12-16 10:42:46] 2025-12-16 09:42:02,235 | INFO     | [data] copytool_out thread has finished
[2025-12-16 10:42:46] 2025-12-16 09:42:02,292 | INFO     | [job] validate thread has finished
[2025-12-16 10:42:46] 2025-12-16 09:42:02,338 | INFO     | [payload] failed_post thread has finished
[2025-12-16 10:42:46] 2025-12-16 09:42:03,044 | INFO     | [job] queue monitor thread has finished
[2025-12-16 10:42:46] 2025-12-16 09:42:04,101 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 10:42:46] 2025-12-16 09:42:29,845 | INFO     | PID=24962 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 10:42:46] 2025-12-16 09:42:29,845 | INFO     | .. there are 9 such processes running
[2025-12-16 10:42:46] 2025-12-16 09:42:29,847 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 10:42:46] 2025-12-16 09:42:29,847 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 10:42:46] 2025-12-16 09:42:29,847 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 10:42:46] 2025-12-16 09:42:35,898 | INFO     | [monitor] cgroup control has ended
[2025-12-16 10:42:46] 2025-12-16 09:42:36,636 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139665285257024)>', '<ExcThread(monitor, started 139664837023488)>']
[2025-12-16 10:42:46] 2025-12-16 09:42:36,887 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 10:42:46] 2025-12-16 09:42:36,887 | INFO     | [monitor] control thread has ended
[2025-12-16 10:42:46] 2025-12-16 09:42:41,662 | INFO     | all workflow threads have been joined
[2025-12-16 10:42:46] 2025-12-16 09:42:41,662 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 10:42:46] 2025-12-16 09:42:41,662 | INFO     | traces error code: 0
[2025-12-16 10:42:46] 2025-12-16 09:42:41,662 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 10:42:46] 2025-12-16 09:42:41,856 [wrapper] ==== pilot stdout END ====
[2025-12-16 10:42:46] 2025-12-16 09:42:41,879 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 10:42:46] 2025-12-16 09:42:41,962 [wrapper] pilotpid: 24962
[2025-12-16 10:42:46] 2025-12-16 09:42:42,050 [wrapper] Pilot exit status: 0
[2025-12-16 10:42:46] 2025-12-16 09:42:42,406 [wrapper] pandaids: 6929783635
[2025-12-16 10:42:46] 2025-12-16 09:42:43,422 [wrapper] cleanup supervisor_pilot 18249 24963
[2025-12-16 10:42:46] 2025-12-16 09:42:43,499 [wrapper] Test setup, not cleaning
[2025-12-16 10:42:46] 2025-12-16 09:42:43,540 [wrapper] apfmon messages muted
[2025-12-16 10:42:46] 2025-12-16 09:42:43,606 [wrapper] ==== wrapper stdout END ====
[2025-12-16 10:42:46] 2025-12-16 09:42:43,694 [wrapper] ==== wrapper stderr END ====
[2025-12-16 10:42:46]  *** Error codes and diagnostics ***
[2025-12-16 10:42:46]     "exeErrorCode": 0,
[2025-12-16 10:42:46]     "exeErrorDiag": "",
[2025-12-16 10:42:46]     "pilotErrorCode": 0,
[2025-12-16 10:42:46]     "pilotErrorDiag": "",
[2025-12-16 10:42:46]  *** Listing of results directory ***
[2025-12-16 10:42:46] total 447128
[2025-12-16 10:42:46] -rw-r--r--. 1 boinc boinc      5112 Dec 15 14:27 queuedata.json
[2025-12-16 10:42:46] -rw-r--r--. 1 boinc boinc    579449 Dec 15 14:27 pilot3.tar.gz
[2025-12-16 10:42:46] -rwx------. 1 boinc boinc     36322 Dec 15 14:27 runpilot2-wrapper.sh
[2025-12-16 10:42:46] -rw-r--r--. 1 boinc boinc       100 Dec 16 05:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 10:42:46] -rwxr-xr-x. 1 boinc boinc      7986 Dec 16 05:56 run_atlas
[2025-12-16 10:42:46] -rw-r--r--. 1 boinc boinc       105 Dec 16 05:56 job.xml
[2025-12-16 10:42:46] -rw-r--r--. 2 boinc boinc    592391 Dec 16 05:56 input.tar.gz
[2025-12-16 10:42:46] -rw-r--r--. 1 boinc boinc      6393 Dec 16 05:56 init_data.xml
[2025-12-16 10:42:46] -rw-r--r--. 2 boinc boinc 225602928 Dec 16 05:56 EVNT.47898761._000663.pool.root.1
[2025-12-16 10:42:46] -rw-r--r--. 2 boinc boinc     15847 Dec 16 05:56 start_atlas.sh
[2025-12-16 10:42:46] drwxrwx--x. 2 boinc boinc        68 Dec 16 05:56 shared
[2025-12-16 10:42:46] -rw-r--r--. 1 boinc boinc         0 Dec 16 05:56 boinc_lockfile
[2025-12-16 10:42:46] -rw-r--r--. 1 boinc boinc      2508 Dec 16 05:57 pandaJob.out
[2025-12-16 10:42:46] -rw-------. 1 boinc boinc    994531 Dec 16 06:01 agis_schedconf.cvmfs.json
[2025-12-16 10:42:46] drwx------. 5 boinc boinc      4096 Dec 16 06:01 pilot3
[2025-12-16 10:42:46] -rw-------. 1 boinc boinc 222844162 Dec 16 10:38 HITS.47898763._016598.pool.root.1
[2025-12-16 10:42:46] -rw-r--r--. 1 boinc boinc       531 Dec 16 10:38 boinc_task_state.xml
[2025-12-16 10:42:46] -rw-------. 1 boinc boinc      1022 Dec 16 10:40 memory_monitor_summary.json
[2025-12-16 10:42:46] -rw-------. 1 boinc boinc   1516240 Dec 16 10:40 agis_ddmendpoints.agis.ALL.json
[2025-12-16 10:42:46] -rw-------. 1 boinc boinc    495312 Dec 16 10:40 log.47898763._016598.job.log.tgz.1
[2025-12-16 10:42:46] -rw-------. 1 boinc boinc      7788 Dec 16 10:41 heartbeat.json
[2025-12-16 10:42:46] -rw-------. 1 boinc boinc        95 Dec 16 10:42 pilot_heartbeat.json
[2025-12-16 10:42:46] -rw-------. 1 boinc boinc      5071 Dec 16 10:42 pilotlog.txt
[2025-12-16 10:42:46] -rw-------. 1 boinc boinc   2260374 Dec 16 10:42 log.47898763._016598.job.log.1
[2025-12-16 10:42:46] -rw-------. 1 boinc boinc       357 Dec 16 10:42 output.list
[2025-12-16 10:42:46] -rw-r--r--. 1 boinc boinc       620 Dec 16 10:42 runtime_log
[2025-12-16 10:42:46] -rw-------. 1 boinc boinc   2775040 Dec 16 10:42 result.tar.gz
[2025-12-16 10:42:46] -rw-r--r--. 1 boinc boinc      8833 Dec 16 10:42 runtime_log.err
[2025-12-16 10:42:46] -rw-------. 1 boinc boinc       657 Dec 16 10:42 IxeNDmgmNp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJVTKDmhmKvvm.diag
[2025-12-16 10:42:46] -rw-r--r--. 1 boinc boinc      8192 Dec 16 10:42 boinc_mmap_file
[2025-12-16 10:42:46] -rw-r--r--. 1 boinc boinc        28 Dec 16 10:42 wrapper_checkpoint.txt
[2025-12-16 10:42:46] -rw-r--r--. 1 boinc boinc     20774 Dec 16 10:42 stderr.txt
[2025-12-16 10:42:46] HITS file was successfully produced:
[2025-12-16 10:42:46] -rw-------. 1 boinc boinc 222844162 Dec 16 10:38 shared/HITS.pool.root.1
[2025-12-16 10:42:46]  *** Contents of shared directory: ***
[2025-12-16 10:42:46] total 441248
[2025-12-16 10:42:46] -rw-r--r--. 2 boinc boinc    592391 Dec 16 05:56 input.tar.gz
[2025-12-16 10:42:46] -rw-r--r--. 2 boinc boinc 225602928 Dec 16 05:56 ATLAS.root_0
[2025-12-16 10:42:46] -rw-r--r--. 2 boinc boinc     15847 Dec 16 05:56 start_atlas.sh
[2025-12-16 10:42:46] -rw-------. 1 boinc boinc 222844162 Dec 16 10:38 HITS.pool.root.1
[2025-12-16 10:42:46] -rw-------. 1 boinc boinc   2775040 Dec 16 10:42 result.tar.gz
10:42:48 (21199): run_atlas exited; CPU time 75510.143683
10:42:48 (21199): called boinc_finish(0)

</stderr_txt>
]]>

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