Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:45:07 (1670221): wrapper (7.7.26015): starting
08:45:07 (1670221): wrapper: running run_atlas (--nthreads 2)
[2025-12-16 08:45:07] Arguments: --nthreads 2
[2025-12-16 08:45:07] Threads: 2
[2025-12-16 08:45:07] Checking for CVMFS
[2025-12-16 08:45:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 08:45:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 08:45:07] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 08:45:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 08:45:08] 2.9.2.0 925053 3867 64240 154062 0 56 35421737 36864001 0 130560 0 1985608 99.986 139550 19588 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-16 08:45:08] CVMFS is ok
[2025-12-16 08:45:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 08:45:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 08:45:08] Further information can be found at the LHC@home message board.
[2025-12-16 08:45:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 08:45:08] Checking for apptainer binary...
[2025-12-16 08:45:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 08:45:08] Running /usr/bin/apptainer --version
[2025-12-16 08:45:08] apptainer version 1.4.1-1.1
[2025-12-16 08:45:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 08:45:08] atlasA219
[2025-12-16 08:45:08] apptainer works
[2025-12-16 08:45:08] Set ATHENA_PROC_NUMBER=2
[2025-12-16 08:45:08] Set ATHENA_CORE_NUMBER=2
[2025-12-16 08:45:08] Starting ATLAS job with PandaID=6929631908
[2025-12-16 08:45:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 10:58:38]  *** The last 200 lines of the pilot log: ***
[2025-12-16 10:58:38] 2025-12-16 09:57:34,647 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 10:58:38] 2025-12-16 09:57:34,647 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 10:58:38] 2025-12-16 09:57:34,647 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 10:58:38] 2025-12-16 09:57:34,647 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 10:58:38] 2025-12-16 09:57:34,647 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 10:58:38] 2025-12-16 09:57:34,647 | INFO     | job 6929631908 has completed (purged errors)
[2025-12-16 10:58:38] 2025-12-16 09:57:34,647 | INFO     | overall cleanup function is called
[2025-12-16 10:58:38] 2025-12-16 09:57:35,653 | INFO     | --- collectZombieJob: --- 10, [1680356]
[2025-12-16 10:58:38] 2025-12-16 09:57:35,653 | INFO     | zombie collector waiting for pid 1680356
[2025-12-16 10:58:38] 2025-12-16 09:57:35,654 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 10:58:38] 2025-12-16 09:57:35,654 | INFO     | collected zombie processes
[2025-12-16 10:58:38] 2025-12-16 09:57:35,654 | INFO     | will attempt to kill all subprocesses of pid=1680356
[2025-12-16 10:58:38] 2025-12-16 09:57:35,689 | INFO     | process IDs to be killed: [1680356] (in reverse order)
[2025-12-16 10:58:38] 2025-12-16 09:57:35,711 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 10:58:38] 2025-12-16 09:57:35,711 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 10:58:38] 2025-12-16 09:57:35,715 | INFO     | did not find any defunct processes belonging to 1680356
[2025-12-16 10:58:38] 2025-12-16 09:57:35,718 | INFO     | did not find any defunct processes belonging to 1680356
[2025-12-16 10:58:38] 2025-12-16 09:57:35,718 | INFO     | ready for new job
[2025-12-16 10:58:38] 2025-12-16 09:57:35,719 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 10:58:38] 2025-12-16 09:57:35,720 | INFO     | ***************************************
[2025-12-16 10:58:38] 2025-12-16 09:57:35,721 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 10:58:38] 2025-12-16 09:57:35,721 | INFO     | ***************************************
[2025-12-16 10:58:38] 2025-12-16 09:57:35,721 | INFO     | 
[2025-12-16 10:58:38] 2025-12-16 09:57:35,722 | INFO     | architecture information:
[2025-12-16 10:58:38] 2025-12-16 09:57:35,722 | INFO     | executing command: cat /etc/os-release
[2025-12-16 10:58:38] 2025-12-16 09:57:35,750 | INFO     | cat /etc/os-release:
[2025-12-16 10:58:38] NAME="CentOS Linux"
[2025-12-16 10:58:38] VERSION="7 (Core)"
[2025-12-16 10:58:38] ID="centos"
[2025-12-16 10:58:38] ID_LIKE="rhel fedora"
[2025-12-16 10:58:38] VERSION_ID="7"
[2025-12-16 10:58:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 10:58:38] ANSI_COLOR="0;31"
[2025-12-16 10:58:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 10:58:38] HOME_URL="https://www.centos.org/"
[2025-12-16 10:58:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 10:58:38] 
[2025-12-16 10:58:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 10:58:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 10:58:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 10:58:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 10:58:38] 
[2025-12-16 10:58:38] 2025-12-16 09:57:35,751 | INFO     | ***************************************
[2025-12-16 10:58:38] 2025-12-16 09:57:36,255 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-16 10:58:38] 2025-12-16 09:57:36,267 | INFO     | sufficient remaining disk space (175219146752 B)
[2025-12-16 10:58:38] 2025-12-16 09:57:36,267 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 10:58:38] 2025-12-16 09:57:36,267 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 10:58:38] 2025-12-16 09:57:36,267 | INFO     | update_server=False
[2025-12-16 10:58:38] 2025-12-16 09:57:36,267 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 10:58:38] 2025-12-16 09:57:36,267 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 10:58:38] 2025-12-16 09:57:36,267 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 10:58:38] 2025-12-16 09:57:36,267 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 10:58:38] 2025-12-16 09:57:36,444 | INFO     | all payload control threads have been joined
[2025-12-16 10:58:38] 2025-12-16 09:57:36,597 | INFO     | all job control threads have been joined
[2025-12-16 10:58:38] 2025-12-16 09:57:36,695 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-16 10:58:38] 2025-12-16 09:57:36,696 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-16 10:58:38] 2025-12-16 09:57:36,696 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 10:58:38] 2025-12-16 09:57:36,696 | INFO     | will abort loop
[2025-12-16 10:58:38] 2025-12-16 09:57:36,724 | INFO     | all data control threads have been joined
[2025-12-16 10:58:38] 2025-12-16 09:57:37,272 | INFO     | [job] queue monitor thread has finished
[2025-12-16 10:58:38] 2025-12-16 09:57:37,272 | INFO     | [job] retrieve thread has finished
[2025-12-16 10:58:38] 2025-12-16 09:57:37,450 | INFO     | [payload] control thread has finished
[2025-12-16 10:58:38] 2025-12-16 09:57:37,506 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 10:58:38] 2025-12-16 09:57:37,603 | INFO     | [job] control thread has finished
[2025-12-16 10:58:38] 2025-12-16 09:57:37,702 | INFO     | [job] job monitor thread has finished
[2025-12-16 10:58:38] 2025-12-16 09:57:37,730 | INFO     | [data] control thread has finished
[2025-12-16 10:58:38] 2025-12-16 09:57:38,273 | INFO     | [data] copytool_out thread has finished
[2025-12-16 10:58:38] 2025-12-16 09:57:38,338 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 10:58:38] 2025-12-16 09:57:38,392 | INFO     | [data] copytool_in thread has finished
[2025-12-16 10:58:38] 2025-12-16 09:57:38,455 | INFO     | [payload] validate_post thread has finished
[2025-12-16 10:58:38] 2025-12-16 09:57:38,482 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 10:58:38] 2025-12-16 09:57:38,566 | INFO     | [payload] failed_post thread has finished
[2025-12-16 10:58:38] 2025-12-16 09:57:38,586 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 10:58:38] 2025-12-16 09:57:38,649 | INFO     | [job] validate thread has finished
[2025-12-16 10:58:38] 2025-12-16 09:57:40,274 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 10:58:38] 2025-12-16 09:58:05,959 | INFO     | PID=1673931 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 10:58:38] 2025-12-16 09:58:05,959 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 10:58:38] 2025-12-16 09:58:05,959 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 10:58:38] 2025-12-16 09:58:05,959 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 10:58:38] 2025-12-16 09:58:33,185 | INFO     | [monitor] cgroup control has ended
[2025-12-16 10:58:38] 2025-12-16 09:58:33,692 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140258985916224)>', '<ExcThread(monitor, started 140258129737472)>']
[2025-12-16 10:58:38] 2025-12-16 09:58:34,102 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 10:58:38] 2025-12-16 09:58:34,102 | INFO     | [monitor] control thread has ended
[2025-12-16 10:58:38] 2025-12-16 09:58:38,717 | INFO     | all workflow threads have been joined
[2025-12-16 10:58:38] 2025-12-16 09:58:38,718 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 10:58:38] 2025-12-16 09:58:38,719 | INFO     | traces error code: 0
[2025-12-16 10:58:38] 2025-12-16 09:58:38,719 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 10:58:38] 2025-12-16 09:58:38,763 [wrapper] ==== pilot stdout END ====
[2025-12-16 10:58:38] 2025-12-16 09:58:38,766 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 10:58:38] 2025-12-16 09:58:38,768 [wrapper] pilotpid: 1673931
[2025-12-16 10:58:38] 2025-12-16 09:58:38,770 [wrapper] Pilot exit status: 0
[2025-12-16 10:58:38] 2025-12-16 09:58:38,777 [wrapper] pandaids: 6929631908
[2025-12-16 10:58:38] 2025-12-16 09:58:38,791 [wrapper] cleanup supervisor_pilot 1694531 1673932
[2025-12-16 10:58:38] 2025-12-16 09:58:38,794 [wrapper] Test setup, not cleaning
[2025-12-16 10:58:38] 2025-12-16 09:58:38,796 [wrapper] apfmon messages muted
[2025-12-16 10:58:38] 2025-12-16 09:58:38,798 [wrapper] ==== wrapper stdout END ====
[2025-12-16 10:58:38] 2025-12-16 09:58:38,800 [wrapper] ==== wrapper stderr END ====
[2025-12-16 10:58:38]  *** Error codes and diagnostics ***
[2025-12-16 10:58:38]     "exeErrorCode": 0,
[2025-12-16 10:58:38]     "exeErrorDiag": "",
[2025-12-16 10:58:38]     "pilotErrorCode": 0,
[2025-12-16 10:58:38]     "pilotErrorDiag": "",
[2025-12-16 10:58:38]  *** Listing of results directory ***
[2025-12-16 10:58:38] total 338980
[2025-12-16 10:58:38] -rw-r--r-- 1 boinc boinc    579449 Dec 15 09:08 pilot3.tar.gz
[2025-12-16 10:58:38] -rw-r--r-- 1 boinc boinc      5112 Dec 15 09:09 queuedata.json
[2025-12-16 10:58:38] -rwx------ 1 boinc boinc     36322 Dec 15 09:09 runpilot2-wrapper.sh
[2025-12-16 10:58:38] -rw-r--r-- 1 boinc boinc       100 Dec 16 08:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 10:58:38] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 08:45 run_atlas
[2025-12-16 10:58:38] -rw-r--r-- 1 boinc boinc       105 Dec 16 08:45 job.xml
[2025-12-16 10:58:38] -rw-r--r-- 2 boinc boinc 191367254 Dec 16 08:45 EVNT.47886829._000368.pool.root.1
[2025-12-16 10:58:38] drwxrwx--x 2 boinc boinc      4096 Dec 16 08:45 shared
[2025-12-16 10:58:38] -rw-r--r-- 2 boinc boinc    592422 Dec 16 08:45 input.tar.gz
[2025-12-16 10:58:38] -rw-r--r-- 2 boinc boinc     15847 Dec 16 08:45 start_atlas.sh
[2025-12-16 10:58:38] -rw-r--r-- 1 boinc boinc         0 Dec 16 08:45 boinc_setup_complete
[2025-12-16 10:58:38] -rw-r--r-- 1 boinc boinc      6208 Dec 16 08:45 init_data.xml
[2025-12-16 10:58:38] -rw-r--r-- 1 boinc boinc         0 Dec 16 08:45 boinc_lockfile
[2025-12-16 10:58:38] -rw-r--r-- 1 boinc boinc      2546 Dec 16 08:45 pandaJob.out
[2025-12-16 10:58:38] -rw------- 1 boinc boinc    994531 Dec 16 08:45 agis_schedconf.cvmfs.json
[2025-12-16 10:58:38] -rw------- 1 boinc boinc   1516240 Dec 16 08:45 agis_ddmendpoints.agis.ALL.json
[2025-12-16 10:58:38] drwx------ 5 boinc boinc      4096 Dec 16 08:45 pilot3
[2025-12-16 10:58:38] -rw------- 1 boinc boinc 148996914 Dec 16 10:57 HITS.47886831._008278.pool.root.1
[2025-12-16 10:58:38] -rw-r--r-- 1 boinc boinc       529 Dec 16 10:57 boinc_task_state.xml
[2025-12-16 10:58:38] -rw------- 1 boinc boinc        95 Dec 16 10:57 pilot_heartbeat.json
[2025-12-16 10:58:38] -rw------- 1 boinc boinc      1009 Dec 16 10:57 memory_monitor_summary.json
[2025-12-16 10:58:38] -rw------- 1 boinc boinc    281942 Dec 16 10:57 log.47886831._008278.job.log.tgz.1
[2025-12-16 10:58:38] -rw------- 1 boinc boinc      7748 Dec 16 10:57 heartbeat.json
[2025-12-16 10:58:38] -rw-r--r-- 1 boinc boinc      8192 Dec 16 10:58 boinc_mmap_file
[2025-12-16 10:58:38] -rw-r--r-- 1 boinc boinc        27 Dec 16 10:58 wrapper_checkpoint.txt
[2025-12-16 10:58:38] -rw------- 1 boinc boinc      4938 Dec 16 10:58 pilotlog.txt
[2025-12-16 10:58:38] -rw------- 1 boinc boinc   1138063 Dec 16 10:58 log.47886831._008278.job.log.1
[2025-12-16 10:58:38] -rw------- 1 boinc boinc       357 Dec 16 10:58 output.list
[2025-12-16 10:58:38] -rw-r--r-- 1 boinc boinc       620 Dec 16 10:58 runtime_log
[2025-12-16 10:58:38] -rw------- 1 boinc boinc   1443840 Dec 16 10:58 result.tar.gz
[2025-12-16 10:58:38] -rw------- 1 boinc boinc       662 Dec 16 10:58 uaEODmYpIp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmH4SKDmfLOpon.diag
[2025-12-16 10:58:38] -rw-r--r-- 1 boinc boinc      8912 Dec 16 10:58 runtime_log.err
[2025-12-16 10:58:38] -rw-r--r-- 1 boinc boinc     11549 Dec 16 10:58 stderr.txt
[2025-12-16 10:58:38] HITS file was successfully produced:
[2025-12-16 10:58:38] -rw------- 1 boinc boinc 148996914 Dec 16 10:57 shared/HITS.pool.root.1
[2025-12-16 10:58:38]  *** Contents of shared directory: ***
[2025-12-16 10:58:38] total 334408
[2025-12-16 10:58:38] -rw-r--r-- 2 boinc boinc 191367254 Dec 16 08:45 ATLAS.root_0
[2025-12-16 10:58:38] -rw-r--r-- 2 boinc boinc    592422 Dec 16 08:45 input.tar.gz
[2025-12-16 10:58:38] -rw-r--r-- 2 boinc boinc     15847 Dec 16 08:45 start_atlas.sh
[2025-12-16 10:58:38] -rw------- 1 boinc boinc 148996914 Dec 16 10:57 HITS.pool.root.1
[2025-12-16 10:58:38] -rw------- 1 boinc boinc   1443840 Dec 16 10:58 result.tar.gz
10:58:40 (1670221): run_atlas exited; CPU time 15466.718483
10:58:40 (1670221): called boinc_finish(0)

</stderr_txt>
]]>

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