Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:33:12 (14394): wrapper (7.7.26015): starting
17:33:12 (14394): wrapper: running run_atlas (--nthreads 12)
[2025-12-15 17:33:12] Arguments: --nthreads 12
[2025-12-15 17:33:12] Threads: 12
[2025-12-15 17:33:12] Checking for CVMFS
[2025-12-15 17:33:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 17:33:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 17:33:12] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 17:33:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 17:33:12] 2.11.2.0 2937 315647 95148 154049 0 57 15344237 20275201 1 130560 1 140215861 99.966 18916143 15839 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-15 17:33:12] CVMFS is ok
[2025-12-15 17:33:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 17:33:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 17:33:12] Further information can be found at the LHC@home message board.
[2025-12-15 17:33:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 17:33:12] Checking for apptainer binary...
[2025-12-15 17:33:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 17:33:12] Running /usr/bin/apptainer --version
[2025-12-15 17:33:12] apptainer version 1.3.2-1.el7
[2025-12-15 17:33:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 17:33:14] c-205-8.aglt2.org
[2025-12-15 17:33:14] apptainer works
[2025-12-15 17:33:14] Set ATHENA_PROC_NUMBER=12
[2025-12-15 17:33:14] Set ATHENA_CORE_NUMBER=12
[2025-12-15 17:33:14] Starting ATLAS job with PandaID=6931297600
[2025-12-15 17:33:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 18:39:41]  *** The last 200 lines of the pilot log: ***
[2025-12-15 18:39:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-15 18:39:41]  replicas=None
[2025-12-15 18:39:41]  scope=mc23_13p6TeV
[2025-12-15 18:39:41]  status=None
[2025-12-15 18:39:41]  status_code=0
[2025-12-15 18:39:41]  storage_token=
[2025-12-15 18:39:41]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6931297600/log.47899050._001210.job.log.tgz.1
[2025-12-15 18:39:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/70/f5/log.47899050._001210.job.log.tgz.1
[2025-12-15 18:39:41]  workdir=None
[2025-12-15 18:39:41] ]
[2025-12-15 18:39:41] 2025-12-15 23:38:26,497 | INFO     | transferring file log.47899050._001210.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6931297600/log.47899050._001210.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-15 18:39:41] 2025-12-15 23:38:26,497 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6931297600/log.47899050._001210.job.log.tgz.1 /tmp/boinchome/slots/0/log.47899050._001210.job
[2025-12-15 18:39:41] 2025-12-15 23:38:26,517 | INFO     | adding to output.list: log.47899050._001210.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/70/f5/log.47899050._001210.job.log.tg
[2025-12-15 18:39:41] 2025-12-15 23:38:26,518 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-15 18:39:41] 2025-12-15 23:38:26,518 | INFO     | summary of transferred files:
[2025-12-15 18:39:41] 2025-12-15 23:38:26,518 | INFO     |  -- lfn=log.47899050._001210.job.log.tgz.1, status_code=0, status=transferred
[2025-12-15 18:39:41] 2025-12-15 23:38:26,519 | INFO     | stage-out finished correctly
[2025-12-15 18:39:41] 2025-12-15 23:38:27,698 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-15 18:39:41] 2025-12-15 23:38:28,148 | INFO     | time since job start (3899s) is within the limit (174528.0s)
[2025-12-15 18:39:41] 2025-12-15 23:38:28,450 | INFO     | monitor loop #289: job 0:6931297600 is in state 'finished'
[2025-12-15 18:39:41] 2025-12-15 23:38:28,451 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 18:39:41] 2025-12-15 23:38:30,090 | INFO     | job 6931297600 has state=finished
[2025-12-15 18:39:41] 2025-12-15 23:38:30,090 | INFO     | preparing for final server update for job 6931297600 in state='finished'
[2025-12-15 18:39:41] 2025-12-15 23:38:30,091 | INFO     | this job has now completed (state=finished)
[2025-12-15 18:39:41] 2025-12-15 23:38:30,091 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-15 18:39:41] 2025-12-15 23:38:30,091 | INFO     | log transfer has been attempted: DONE
[2025-12-15 18:39:41] 2025-12-15 23:38:30,091 | INFO     | job 6931297600 has finished - writing final server update
[2025-12-15 18:39:41] 2025-12-15 23:38:30,092 | INFO     | total number of processed events: 400 (read)
[2025-12-15 18:39:41] 2025-12-15 23:38:30,093 | INFO     | executing command: lscpu
[2025-12-15 18:39:41] 2025-12-15 23:38:30,118 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-15 18:39:41] 2025-12-15 23:38:30,154 | INFO     | time since job start (3901s) is within the limit (174528.0s)
[2025-12-15 18:39:41] 2025-12-15 23:38:30,953 | INFO     | monitor loop #290: job 0:6931297600 is in state 'finished'
[2025-12-15 18:39:41] 2025-12-15 23:38:30,953 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 18:39:41] 2025-12-15 23:38:31,276 | INFO     | PID=18075 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-15 18:39:41] 2025-12-15 23:38:32,277 | INFO     | time since job start (3903s) is within the limit (174528.0s)
[2025-12-15 18:39:41] 2025-12-15 23:38:33,456 | INFO     | monitor loop #291: job 0:6931297600 is in state 'finished'
[2025-12-15 18:39:41] 2025-12-15 23:38:33,457 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 18:39:41] 2025-12-15 23:38:34,281 | INFO     | time since job start (3905s) is within the limit (174528.0s)
[2025-12-15 18:39:41] 2025-12-15 23:38:34,778 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-15 18:39:41] 2025-12-15 23:38:34,782 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.6666666666667
[2025-12-15 18:39:41] 2025-12-15 23:38:34,784 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6931297600/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 18:39:41] 2025-12-15 23:38:34,785 | INFO     | extracted standard info from prmon json
[2025-12-15 18:39:41] 2025-12-15 23:38:34,785 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 18:39:41] 2025-12-15 23:38:34,785 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 18:39:41] 2025-12-15 23:38:34,786 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-15 18:39:41] 2025-12-15 23:38:34,786 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 18:39:41] 2025-12-15 23:38:34,788 | INFO     | fitting pss+swap vs Time
[2025-12-15 18:39:41] 2025-12-15 23:38:34,789 | INFO     | sum of square deviations: 57407588.0
[2025-12-15 18:39:41] 2025-12-15 23:38:34,789 | INFO     | sum of deviations: -6649440725.0
[2025-12-15 18:39:41] 2025-12-15 23:38:34,789 | INFO     | mean x: 1765840050.0
[2025-12-15 18:39:41] 2025-12-15 23:38:34,789 | INFO     | mean y: 2827070.0
[2025-12-15 18:39:41] 2025-12-15 23:38:34,789 | INFO     | intersect: 204537613347.83554
[2025-12-15 18:39:41] 2025-12-15 23:38:34,790 | INFO     | chi2: 0.03994364762038745
[2025-12-15 18:39:41] 2025-12-15 23:38:34,790 | INFO     | current memory leak: -115.83 B/s (using 57 data points, chi2=0.04)
[2025-12-15 18:39:41] 2025-12-15 23:38:34,790 | INFO     | could have reported an average CPU frequency of 2026 MHz (6 samples)
[2025-12-15 18:39:41] 2025-12-15 23:38:34,790 | INFO     | ..............................
[2025-12-15 18:39:41] 2025-12-15 23:38:34,790 | INFO     | . Timing measurements:
[2025-12-15 18:39:41] 2025-12-15 23:38:34,790 | INFO     | . get job = 0 s
[2025-12-15 18:39:41] 2025-12-15 23:38:34,790 | INFO     | . initial setup = 2 s
[2025-12-15 18:39:41] 2025-12-15 23:38:34,791 | INFO     | . payload setup = 7 s
[2025-12-15 18:39:41] 2025-12-15 23:38:34,791 | INFO     | . stage-in = 0 s
[2025-12-15 18:39:41] 2025-12-15 23:38:34,791 | INFO     | . payload execution = 3870 s
[2025-12-15 18:39:41] 2025-12-15 23:38:34,791 | INFO     | . stage-out = 0 s
[2025-12-15 18:39:41] 2025-12-15 23:38:34,791 | INFO     | . log creation = 0 s
[2025-12-15 18:39:41] 2025-12-15 23:38:34,791 | INFO     | ..............................
[2025-12-15 18:39:41] 2025-12-15 23:38:34,991 | INFO     | 
[2025-12-15 18:39:41] 2025-12-15 23:38:34,991 | INFO     | job summary report
[2025-12-15 18:39:41] 2025-12-15 23:38:34,991 | INFO     | --------------------------------------------------
[2025-12-15 18:39:41] 2025-12-15 23:38:34,991 | INFO     | PanDA job id: 6931297600
[2025-12-15 18:39:41] 2025-12-15 23:38:34,991 | INFO     | task id: 47899050
[2025-12-15 18:39:41] 2025-12-15 23:38:34,992 | INFO     | errors: (none)
[2025-12-15 18:39:41] 2025-12-15 23:38:34,992 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-15 18:39:41] 2025-12-15 23:38:34,992 | INFO     | pilot state: finished 
[2025-12-15 18:39:41] 2025-12-15 23:38:34,992 | INFO     | transexitcode: 0
[2025-12-15 18:39:41] 2025-12-15 23:38:34,992 | INFO     | exeerrorcode: 0
[2025-12-15 18:39:41] 2025-12-15 23:38:34,993 | INFO     | exeerrordiag: 
[2025-12-15 18:39:41] 2025-12-15 23:38:34,993 | INFO     | exitcode: 0
[2025-12-15 18:39:41] 2025-12-15 23:38:34,993 | INFO     | exitmsg: OK
[2025-12-15 18:39:41] 2025-12-15 23:38:34,993 | INFO     | cpuconsumptiontime: 42942 s
[2025-12-15 18:39:41] 2025-12-15 23:38:34,993 | INFO     | nevents: 400
[2025-12-15 18:39:41] 2025-12-15 23:38:34,993 | INFO     | neventsw: 0
[2025-12-15 18:39:41] 2025-12-15 23:38:34,994 | INFO     | pid: 24484
[2025-12-15 18:39:41] 2025-12-15 23:38:34,994 | INFO     | pgrp: 24484
[2025-12-15 18:39:41] 2025-12-15 23:38:34,994 | INFO     | corecount: 12
[2025-12-15 18:39:41] 2025-12-15 23:38:34,994 | INFO     | event service: False
[2025-12-15 18:39:41] 2025-12-15 23:38:34,994 | INFO     | sizes: {0: 2283761, 1: 2283960, 6: 2284222, 11: 2284250, 3881: 2310019, 3882: 2319017, 3883: 2319201, 3890: 2319395}
[2025-12-15 18:39:41] 2025-12-15 23:38:34,994 | INFO     | --------------------------------------------------
[2025-12-15 18:39:41] 2025-12-15 23:38:34,995 | INFO     | 
[2025-12-15 18:39:41] 2025-12-15 23:38:34,995 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-15 18:39:41] 2025-12-15 23:38:35,018 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-15 18:39:41] 2025-12-15 23:38:35,018 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-15 18:39:41] 2025-12-15 23:38:35,019 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 18:39:41] 2025-12-15 23:38:35,019 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 18:39:41] 2025-12-15 23:38:35,019 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 18:39:41] 2025-12-15 23:38:35,019 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 18:39:41] 2025-12-15 23:38:35,019 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 18:39:41] 2025-12-15 23:38:35,019 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 18:39:41] 2025-12-15 23:38:35,020 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 18:39:41] 2025-12-15 23:38:35,020 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 18:39:41] 2025-12-15 23:38:35,020 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 18:39:41] 2025-12-15 23:38:35,020 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 18:39:41] 2025-12-15 23:38:35,020 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 18:39:41] 2025-12-15 23:38:35,020 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 18:39:41] 2025-12-15 23:38:35,021 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 18:39:41] 2025-12-15 23:38:35,021 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 18:39:41] 2025-12-15 23:38:35,021 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 18:39:41] 2025-12-15 23:38:35,021 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 18:39:41] 2025-12-15 23:38:35,021 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 18:39:41] 2025-12-15 23:38:35,021 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 18:39:41] 2025-12-15 23:38:35,022 | INFO     | job 6931297600 has completed (purged errors)
[2025-12-15 18:39:41] 2025-12-15 23:38:35,022 | INFO     | overall cleanup function is called
[2025-12-15 18:39:41] 2025-12-15 23:38:36,030 | INFO     | --- collectZombieJob: --- 10, [24484]
[2025-12-15 18:39:41] 2025-12-15 23:38:36,030 | INFO     | zombie collector waiting for pid 24484
[2025-12-15 18:39:41] 2025-12-15 23:38:36,030 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 18:39:41] 2025-12-15 23:38:36,030 | INFO     | collected zombie processes
[2025-12-15 18:39:41] 2025-12-15 23:38:36,031 | INFO     | will attempt to kill all subprocesses of pid=24484
[2025-12-15 18:39:41] 2025-12-15 23:38:36,124 | INFO     | process IDs to be killed: [24484] (in reverse order)
[2025-12-15 18:39:41] 2025-12-15 23:38:36,174 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 18:39:41] 2025-12-15 23:38:36,175 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 18:39:41] 2025-12-15 23:38:36,179 | INFO     | did not find any defunct processes belonging to 24484
[2025-12-15 18:39:41] 2025-12-15 23:38:36,181 | INFO     | did not find any defunct processes belonging to 24484
[2025-12-15 18:39:41] 2025-12-15 23:38:36,181 | INFO     | ready for new job
[2025-12-15 18:39:41] 2025-12-15 23:38:36,181 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 18:39:41] 2025-12-15 23:38:36,182 | INFO     | ***************************************
[2025-12-15 18:39:41] 2025-12-15 23:38:36,182 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 18:39:41] 2025-12-15 23:38:36,182 | INFO     | ***************************************
[2025-12-15 18:39:41] 2025-12-15 23:38:36,183 | INFO     | 
[2025-12-15 18:39:41] 2025-12-15 23:38:36,183 | INFO     | architecture information:
[2025-12-15 18:39:41] 2025-12-15 23:38:36,184 | INFO     | executing command: cat /etc/os-release
[2025-12-15 18:39:41] 2025-12-15 23:38:36,197 | INFO     | cat /etc/os-release:
[2025-12-15 18:39:41] NAME="CentOS Linux"
[2025-12-15 18:39:41] VERSION="7 (Core)"
[2025-12-15 18:39:41] ID="centos"
[2025-12-15 18:39:41] ID_LIKE="rhel fedora"
[2025-12-15 18:39:41] VERSION_ID="7"
[2025-12-15 18:39:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 18:39:41] ANSI_COLOR="0;31"
[2025-12-15 18:39:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 18:39:41] HOME_URL="https://www.centos.org/"
[2025-12-15 18:39:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 18:39:41] 
[2025-12-15 18:39:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 18:39:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 18:39:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 18:39:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 18:39:41] 
[2025-12-15 18:39:41] 2025-12-15 23:38:36,197 | INFO     | ***************************************
[2025-12-15 18:39:41] 2025-12-15 23:38:36,700 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-15 18:39:41] 2025-12-15 23:38:36,718 | INFO     | sufficient remaining disk space (29424091136 B)
[2025-12-15 18:39:41] 2025-12-15 23:38:36,719 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 18:39:41] 2025-12-15 23:38:36,719 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 18:39:41] 2025-12-15 23:38:36,719 | INFO     | update_server=False
[2025-12-15 18:39:41] 2025-12-15 23:38:36,719 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 18:39:41] 2025-12-15 23:38:36,720 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 18:39:41] 2025-12-15 23:38:36,965 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 18:39:41] 2025-12-15 23:38:36,965 | INFO     | aborting loop
[2025-12-15 18:39:41] 2025-12-15 23:38:37,111 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 18:39:41] 2025-12-15 23:38:37,494 | INFO     | all payload control threads have been joined
[2025-12-15 18:39:41] 2025-12-15 23:38:37,723 | INFO     | [job] retrieve thread has finished
[2025-12-15 18:39:41] 2025-12-15 23:38:37,725 | INFO     | [job] queue monitor thread has finished
[2025-12-15 18:39:41] 2025-12-15 23:38:37,791 | INFO     | all data control threads have been joined
[2025-12-15 18:39:41] 2025-12-15 23:38:37,803 | INFO     | [payload] validate_post thread has finished
[2025-12-15 18:39:41] 2025-12-15 23:38:37,818 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 18:39:41] 2025-12-15 23:38:37,821 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 18:39:41] 2025-12-15 23:38:37,971 | INFO     | [job] job monitor thread has finished
[2025-12-15 18:39:41] 2025-12-15 23:38:38,207 | INFO     | all job control threads have been joined
[2025-12-15 18:39:41] 2025-12-15 23:38:38,284 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 18:39:41] 2025-12-15 23:38:38,488 | INFO     | [data] copytool_in thread has finished
[2025-12-15 18:39:41] 2025-12-15 23:38:38,499 | INFO     | [payload] control thread has finished
[2025-12-15 18:39:41] 2025-12-15 23:38:38,506 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 18:39:41] 2025-12-15 23:38:38,796 | INFO     | [data] control thread has finished
[2025-12-15 18:39:41] 2025-12-15 23:38:38,825 | INFO     | [payload] failed_post thread has finished
[2025-12-15 18:39:41] 2025-12-15 23:38:39,006 | INFO     | [job] validate thread has finished
[2025-12-15 18:39:41] 2025-12-15 23:38:39,116 | INFO     | [data] copytool_out thread has finished
[2025-12-15 18:39:41] 2025-12-15 23:38:39,212 | INFO     | [job] control thread has finished
[2025-12-15 18:39:41] 2025-12-15 23:38:42,286 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 18:39:41] 2025-12-15 23:38:47,555 | INFO     | job.realtimelogging is not enabled
[2025-12-15 18:39:41] 2025-12-15 23:38:48,560 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 18:39:41] 2025-12-15 23:39:07,488 | INFO     | PID=18075 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-15 18:39:41] 2025-12-15 23:39:07,488 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 18:39:41] 2025-12-15 23:39:07,488 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 18:39:41] 2025-12-15 23:39:07,488 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 18:39:41] 2025-12-15 23:39:34,816 | INFO     | [monitor] cgroup control has ended
[2025-12-15 18:39:41] 2025-12-15 23:39:36,024 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139725672208192)>', '<ExcThread(monitor, started 139724790417152)>']
[2025-12-15 18:39:41] 2025-12-15 23:39:36,615 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 18:39:41] 2025-12-15 23:39:36,615 | INFO     | [monitor] control thread has ended
[2025-12-15 18:39:41] 2025-12-15 23:39:41,026 | INFO     | all workflow threads have been joined
[2025-12-15 18:39:41] 2025-12-15 23:39:41,026 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 18:39:41] 2025-12-15 23:39:41,027 | INFO     | traces error code: 0
[2025-12-15 18:39:41] 2025-12-15 23:39:41,027 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 18:39:41] 2025-12-15 23:39:41,122 [wrapper] ==== pilot stdout END ====
[2025-12-15 18:39:41] 2025-12-15 23:39:41,126 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 18:39:41] 2025-12-15 23:39:41,129 [wrapper] pilotpid: 18075
[2025-12-15 18:39:41] 2025-12-15 23:39:41,133 [wrapper] Pilot exit status: 0
[2025-12-15 18:39:41] 2025-12-15 23:39:41,149 [wrapper] pandaids: 6931297600
[2025-12-15 18:39:41] 2025-12-15 23:39:41,194 [wrapper] cleanup supervisor_pilot 14541 18076
[2025-12-15 18:39:41] 2025-12-15 23:39:41,199 [wrapper] Test setup, not cleaning
[2025-12-15 18:39:41] 2025-12-15 23:39:41,202 [wrapper] apfmon messages muted
[2025-12-15 18:39:41] 2025-12-15 23:39:41,206 [wrapper] ==== wrapper stdout END ====
[2025-12-15 18:39:41] 2025-12-15 23:39:41,211 [wrapper] ==== wrapper stderr END ====
[2025-12-15 18:39:41]  *** Error codes and diagnostics ***
[2025-12-15 18:39:41]     "exeErrorCode": 0,
[2025-12-15 18:39:41]     "exeErrorDiag": "",
[2025-12-15 18:39:41]     "pilotErrorCode": 0,
[2025-12-15 18:39:41]     "pilotErrorDiag": "",
[2025-12-15 18:39:41]  *** Listing of results directory ***
[2025-12-15 18:39:41] total 366044
[2025-12-15 18:39:41] -rw-r--r-- 1 boincer umatlas    579449 Dec 15 00:25 pilot3.tar.gz
[2025-12-15 18:39:41] -rw-r--r-- 1 boincer umatlas      5112 Dec 15 00:27 queuedata.json
[2025-12-15 18:39:41] -rwx------ 1 boincer umatlas     36322 Dec 15 00:28 runpilot2-wrapper.sh
[2025-12-15 18:39:41] -rw-r--r-- 1 boincer umatlas       100 Dec 15 17:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 18:39:41] -rwxr-xr-x 1 boincer umatlas      7986 Dec 15 17:33 run_atlas
[2025-12-15 18:39:41] -rw-r--r-- 1 boincer umatlas       105 Dec 15 17:33 job.xml
[2025-12-15 18:39:41] -rw-r--r-- 2 boincer umatlas 194314609 Dec 15 17:33 EVNT.47899048._000049.pool.root.1
[2025-12-15 18:39:41] -rw-r--r-- 2 boincer umatlas     15847 Dec 15 17:33 start_atlas.sh
[2025-12-15 18:39:41] drwxrwx--x 2 boincer umatlas      4096 Dec 15 17:33 shared
[2025-12-15 18:39:41] -rw-r--r-- 2 boincer umatlas    592383 Dec 15 17:33 input.tar.gz
[2025-12-15 18:39:41] -rw-r--r-- 1 boincer umatlas         0 Dec 15 17:33 boinc_lockfile
[2025-12-15 18:39:41] -rw-r--r-- 1 boincer umatlas      2489 Dec 15 17:33 pandaJob.out
[2025-12-15 18:39:41] -rw------- 1 boincer umatlas        57 Dec 15 17:33 setup.sh.local
[2025-12-15 18:39:41] -rw------- 1 boincer umatlas    994547 Dec 15 17:33 agis_schedconf.cvmfs.json
[2025-12-15 18:39:41] -rw------- 1 boincer umatlas   1516240 Dec 15 17:33 agis_ddmendpoints.agis.ALL.json
[2025-12-15 18:39:41] drwx------ 5 boincer umatlas      4096 Dec 15 17:33 pilot3
[2025-12-15 18:39:41] -rw-r--r-- 1 boincer umatlas      5951 Dec 15 18:27 init_data.xml
[2025-12-15 18:39:41] -rw------- 1 boincer umatlas 174698868 Dec 15 18:37 HITS.47899050._001210.pool.root.1
[2025-12-15 18:39:41] -rw-r--r-- 1 boincer umatlas       529 Dec 15 18:38 boinc_task_state.xml
[2025-12-15 18:39:41] -rw------- 1 boincer umatlas        95 Dec 15 18:38 pilot_heartbeat.json
[2025-12-15 18:39:41] -rw------- 1 boincer umatlas      1043 Dec 15 18:38 memory_monitor_summary.json
[2025-12-15 18:39:41] -rw------- 1 boincer umatlas    371496 Dec 15 18:38 log.47899050._001210.job.log.tgz.1
[2025-12-15 18:39:41] -rw------- 1 boincer umatlas      7845 Dec 15 18:38 heartbeat.json
[2025-12-15 18:39:41] -rw-r--r-- 1 boincer umatlas      8192 Dec 15 18:39 boinc_mmap_file
[2025-12-15 18:39:41] -rw-r--r-- 1 boincer umatlas        27 Dec 15 18:39 wrapper_checkpoint.txt
[2025-12-15 18:39:41] -rw------- 1 boincer umatlas      4818 Dec 15 18:39 pilotlog.txt
[2025-12-15 18:39:41] -rw------- 1 boincer umatlas    573598 Dec 15 18:39 log.47899050._001210.job.log.1
[2025-12-15 18:39:41] -rw------- 1 boincer umatlas       357 Dec 15 18:39 output.list
[2025-12-15 18:39:41] -rw-r--r-- 1 boincer umatlas       620 Dec 15 18:39 runtime_log
[2025-12-15 18:39:41] -rw------- 1 boincer umatlas    962560 Dec 15 18:39 result.tar.gz
[2025-12-15 18:39:41] -rw-r--r-- 1 boincer umatlas      9339 Dec 15 18:39 runtime_log.err
[2025-12-15 18:39:41] -rw------- 1 boincer umatlas       658 Dec 15 18:39 quMMDmaJGp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpLXKDmmqJ1mm.diag
[2025-12-15 18:39:41] -rw-r--r-- 1 boincer umatlas     22010 Dec 15 18:39 stderr.txt
[2025-12-15 18:39:41] HITS file was successfully produced:
[2025-12-15 18:39:41] -rw------- 1 boincer umatlas 174698868 Dec 15 18:37 shared/HITS.pool.root.1
[2025-12-15 18:39:41]  *** Contents of shared directory: ***
[2025-12-15 18:39:41] total 361916
[2025-12-15 18:39:41] -rw-r--r-- 2 boincer umatlas 194314609 Dec 15 17:33 ATLAS.root_0
[2025-12-15 18:39:41] -rw-r--r-- 2 boincer umatlas     15847 Dec 15 17:33 start_atlas.sh
[2025-12-15 18:39:41] -rw-r--r-- 2 boincer umatlas    592383 Dec 15 17:33 input.tar.gz
[2025-12-15 18:39:41] -rw------- 1 boincer umatlas 174698868 Dec 15 18:37 HITS.pool.root.1
[2025-12-15 18:39:41] -rw------- 1 boincer umatlas    962560 Dec 15 18:39 result.tar.gz
18:39:42 (14394): run_atlas exited; CPU time 42925.561854
18:39:42 (14394): called boinc_finish(0)

</stderr_txt>
]]>

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