Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:17:27 (3919129): wrapper (7.7.26015): starting
16:17:27 (3919129): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 16:17:27] Arguments: --nthreads 4
[2025-12-16 16:17:27] Threads: 4
[2025-12-16 16:17:27] Checking for CVMFS
[2025-12-16 16:17:27] No cvmfs_config command found, will try listing directly
[2025-12-16 16:17:27] CVMFS is ok
[2025-12-16 16:17:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 16:17:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 16:17:27] Further information can be found at the LHC@home message board.
[2025-12-16 16:17:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 16:17:27] Checking for apptainer binary...
[2025-12-16 16:17:27] which: no apptainer in ((null))
[2025-12-16 16:17:27] apptainer is not installed, using version from CVMFS
[2025-12-16 16:17:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 16:17:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot108/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2025-12-16 16:17:27] apptainer works
[2025-12-16 16:17:27] Set ATHENA_PROC_NUMBER=4
[2025-12-16 16:17:27] Set ATHENA_CORE_NUMBER=4
[2025-12-16 16:17:27] Starting ATLAS job with PandaID=6929722112
[2025-12-16 16:17:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot108/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 20:12:11]  *** The last 200 lines of the pilot log: ***
[2025-12-16 20:12:11] 2025-12-16 19:09:05,534 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 20:12:11] 2025-12-16 19:09:06,050 | INFO     | time since job start (13884s) is within the limit (174528.0s)
[2025-12-16 20:12:11] 2025-12-16 19:09:08,037 | INFO     | monitor loop #946: job 0:6929722112 is in state 'finished'
[2025-12-16 20:12:11] 2025-12-16 19:09:08,037 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 20:12:11] 2025-12-16 19:09:08,055 | INFO     | time since job start (13886s) is within the limit (174528.0s)
[2025-12-16 20:12:11] 2025-12-16 19:09:09,574 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 20:12:11] 2025-12-16 19:09:09,596 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2680.854773437501
[2025-12-16 20:12:11] 2025-12-16 19:09:09,621 | INFO     | using path: /scratch/boinc/var/slot108/slots/0/PanDA_Pilot-6929722112/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 20:12:11] 2025-12-16 19:09:09,621 | INFO     | extracted standard info from prmon json
[2025-12-16 20:12:11] 2025-12-16 19:09:09,621 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 20:12:11] 2025-12-16 19:09:09,622 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 20:12:11] 2025-12-16 19:09:09,622 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 20:12:11] 2025-12-16 19:09:09,622 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 20:12:11] 2025-12-16 19:09:09,626 | INFO     | fitting pss+swap vs Time
[2025-12-16 20:12:11] 2025-12-16 19:09:09,627 | INFO     | sum of square deviations: 3627000098.0
[2025-12-16 20:12:11] 2025-12-16 19:09:09,628 | INFO     | sum of deviations: -31243313548.0
[2025-12-16 20:12:11] 2025-12-16 19:09:09,629 | INFO     | mean x: 1765905191.0
[2025-12-16 20:12:11] 2025-12-16 19:09:09,629 | INFO     | mean y: 2375030.317180617
[2025-12-16 20:12:11] 2025-12-16 19:09:09,629 | INFO     | intersect: 15214045305.395798
[2025-12-16 20:12:11] 2025-12-16 19:09:09,629 | INFO     | chi2: 1.454420140125269
[2025-12-16 20:12:11] 2025-12-16 19:09:09,630 | INFO     | sum of square deviations: 3392567795.5
[2025-12-16 20:12:11] 2025-12-16 19:09:09,631 | INFO     | sum of deviations: -30385140141.5
[2025-12-16 20:12:11] 2025-12-16 19:09:09,631 | INFO     | mean x: 1765905038.5
[2025-12-16 20:12:11] 2025-12-16 19:09:09,631 | INFO     | mean y: 2375588.220720721
[2025-12-16 20:12:11] 2025-12-16 19:09:09,631 | INFO     | intersect: 15818499334.539368
[2025-12-16 20:12:11] 2025-12-16 19:09:09,632 | INFO     | chi2: 1.4516327664645754
[2025-12-16 20:12:11] 2025-12-16 19:09:09,632 | INFO     | current chi2=1.4516327664645754 (change=0.19164845038886197 %)
[2025-12-16 20:12:11] 2025-12-16 19:09:09,632 | INFO     | right removable region: 221
[2025-12-16 20:12:11] 2025-12-16 19:09:09,632 | INFO     | sum of square deviations: 3392567795.5
[2025-12-16 20:12:11] 2025-12-16 19:09:09,634 | INFO     | sum of deviations: -52739664839.50001
[2025-12-16 20:12:11] 2025-12-16 19:09:09,634 | INFO     | mean x: 1765905343.5
[2025-12-16 20:12:11] 2025-12-16 19:09:09,634 | INFO     | mean y: 2388772.8693693695
[2025-12-16 20:12:11] 2025-12-16 19:09:09,634 | INFO     | intersect: 27454531683.029274
[2025-12-16 20:12:11] 2025-12-16 19:09:09,634 | INFO     | chi2: 0.25380636625398323
[2025-12-16 20:12:11] 2025-12-16 19:09:09,634 | INFO     | current chi2=0.25380636625398323 (change=82.5493088790614 %)
[2025-12-16 20:12:11] 2025-12-16 19:09:09,635 | INFO     | sum of square deviations: 3168461268.0
[2025-12-16 20:12:11] 2025-12-16 19:09:09,636 | INFO     | sum of deviations: -42489169848.000015
[2025-12-16 20:12:11] 2025-12-16 19:09:09,636 | INFO     | mean x: 1765905496.0
[2025-12-16 20:12:11] 2025-12-16 19:09:09,636 | INFO     | mean y: 2381792.3778801844
[2025-12-16 20:12:11] 2025-12-16 19:09:09,636 | INFO     | intersect: 23683232593.000862
[2025-12-16 20:12:11] 2025-12-16 19:09:09,637 | INFO     | chi2: 0.2190070072581282
[2025-12-16 20:12:11] 2025-12-16 19:09:09,637 | INFO     | current chi2=0.2190070072581282 (change=13.71098743875929 %)
[2025-12-16 20:12:11] 2025-12-16 19:09:09,637 | INFO     | left removable region: 20
[2025-12-16 20:12:11] 2025-12-16 19:09:09,637 | INFO     | sum of square deviations: 2518000700.0
[2025-12-16 20:12:11] 2025-12-16 19:09:09,638 | INFO     | sum of deviations: -20509918247.99999
[2025-12-16 20:12:11] 2025-12-16 19:09:09,638 | INFO     | mean x: 1765905618.0
[2025-12-16 20:12:11] 2025-12-16 19:09:09,639 | INFO     | mean y: 2366672.5572139304
[2025-12-16 20:12:11] 2025-12-16 19:09:09,639 | INFO     | intersect: 14386230767.139833
[2025-12-16 20:12:11] 2025-12-16 19:09:09,639 | INFO     | chi2: 0.1022635092451988
[2025-12-16 20:12:11] 2025-12-16 19:09:09,639 | INFO     | current memory leak: -8.15 B/s (using 201 data points, chi2=0.10)
[2025-12-16 20:12:11] 2025-12-16 19:09:09,640 | INFO     | could have reported an average CPU frequency of 2679 MHz (11 samples)
[2025-12-16 20:12:11] 2025-12-16 19:09:09,640 | INFO     | ..............................
[2025-12-16 20:12:11] 2025-12-16 19:09:09,640 | INFO     | . Timing measurements:
[2025-12-16 20:12:11] 2025-12-16 19:09:09,640 | INFO     | . get job = 0 s
[2025-12-16 20:12:11] 2025-12-16 19:09:09,640 | INFO     | . initial setup = 1 s
[2025-12-16 20:12:11] 2025-12-16 19:09:09,640 | INFO     | . payload setup = 9 s
[2025-12-16 20:12:11] 2025-12-16 19:09:09,640 | INFO     | . stage-in = 0 s
[2025-12-16 20:12:11] 2025-12-16 19:09:09,640 | INFO     | . payload execution = 13846 s
[2025-12-16 20:12:11] 2025-12-16 19:09:09,640 | INFO     | . stage-out = 1 s
[2025-12-16 20:12:11] 2025-12-16 19:09:09,640 | INFO     | . log creation = 0 s
[2025-12-16 20:12:11] 2025-12-16 19:09:09,640 | INFO     | ..............................
[2025-12-16 20:12:11] 2025-12-16 19:09:10,060 | INFO     | time since job start (13888s) is within the limit (174528.0s)
[2025-12-16 20:12:11] 2025-12-16 19:09:10,091 | INFO     | 
[2025-12-16 20:12:11] 2025-12-16 19:09:10,091 | INFO     | job summary report
[2025-12-16 20:12:11] 2025-12-16 19:09:10,091 | INFO     | --------------------------------------------------
[2025-12-16 20:12:11] 2025-12-16 19:09:10,091 | INFO     | PanDA job id: 6929722112
[2025-12-16 20:12:11] 2025-12-16 19:09:10,091 | INFO     | task id: 47898763
[2025-12-16 20:12:11] 2025-12-16 19:09:10,092 | INFO     | errors: (none)
[2025-12-16 20:12:11] 2025-12-16 19:09:10,092 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 20:12:11] 2025-12-16 19:09:10,092 | INFO     | pilot state: finished 
[2025-12-16 20:12:11] 2025-12-16 19:09:10,092 | INFO     | transexitcode: 0
[2025-12-16 20:12:11] 2025-12-16 19:09:10,092 | INFO     | exeerrorcode: 0
[2025-12-16 20:12:11] 2025-12-16 19:09:10,092 | INFO     | exeerrordiag: 
[2025-12-16 20:12:11] 2025-12-16 19:09:10,092 | INFO     | exitcode: 0
[2025-12-16 20:12:11] 2025-12-16 19:09:10,092 | INFO     | exitmsg: OK
[2025-12-16 20:12:11] 2025-12-16 19:09:10,092 | INFO     | cpuconsumptiontime: 52995 s
[2025-12-16 20:12:11] 2025-12-16 19:09:10,092 | INFO     | nevents: 400
[2025-12-16 20:12:11] 2025-12-16 19:09:10,092 | INFO     | neventsw: 0
[2025-12-16 20:12:11] 2025-12-16 19:09:10,092 | INFO     | pid: 3931044
[2025-12-16 20:12:11] 2025-12-16 19:09:10,093 | INFO     | pgrp: 3931044
[2025-12-16 20:12:11] 2025-12-16 19:09:10,093 | INFO     | corecount: 4
[2025-12-16 20:12:11] 2025-12-16 19:09:10,093 | INFO     | event service: False
[2025-12-16 20:12:11] 2025-12-16 19:09:10,093 | INFO     | sizes: {0: 2283799, 1: 2283998, 8: 2284260, 11: 2284288, 13859: 2315343, 13860: 2315342, 13861: 2324604, 13869: 2324742}
[2025-12-16 20:12:11] 2025-12-16 19:09:10,093 | INFO     | --------------------------------------------------
[2025-12-16 20:12:11] 2025-12-16 19:09:10,093 | INFO     | 
[2025-12-16 20:12:11] 2025-12-16 19:09:10,093 | INFO     | executing command: ls -lF /scratch/boinc/var/slot108/slots/0
[2025-12-16 20:12:11] 2025-12-16 19:09:10,120 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 20:12:11] 2025-12-16 19:09:10,120 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 20:12:11] 2025-12-16 19:09:10,120 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 20:12:11] 2025-12-16 19:09:10,120 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 20:12:11] 2025-12-16 19:09:10,120 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 20:12:11] 2025-12-16 19:09:10,120 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 20:12:11] 2025-12-16 19:09:10,120 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 20:12:11] 2025-12-16 19:09:10,120 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 20:12:11] 2025-12-16 19:09:10,121 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 20:12:11] 2025-12-16 19:09:10,121 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 20:12:11] 2025-12-16 19:09:10,121 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 20:12:11] 2025-12-16 19:09:10,121 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 20:12:11] 2025-12-16 19:09:10,121 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 20:12:11] 2025-12-16 19:09:10,121 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 20:12:11] 2025-12-16 19:09:10,121 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 20:12:11] 2025-12-16 19:09:10,121 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 20:12:11] 2025-12-16 19:09:10,121 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 20:12:11] 2025-12-16 19:09:10,121 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 20:12:11] 2025-12-16 19:09:10,122 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 20:12:11] 2025-12-16 19:09:10,122 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 20:12:11] 2025-12-16 19:09:10,122 | INFO     | job 6929722112 has completed (purged errors)
[2025-12-16 20:12:11] 2025-12-16 19:09:10,122 | INFO     | overall cleanup function is called
[2025-12-16 20:12:11] 2025-12-16 19:09:11,131 | INFO     | --- collectZombieJob: --- 10, [3931044]
[2025-12-16 20:12:11] 2025-12-16 19:09:11,132 | INFO     | zombie collector waiting for pid 3931044
[2025-12-16 20:12:11] 2025-12-16 19:09:11,132 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 20:12:11] 2025-12-16 19:09:11,132 | INFO     | collected zombie processes
[2025-12-16 20:12:11] 2025-12-16 19:09:11,132 | INFO     | will attempt to kill all subprocesses of pid=3931044
[2025-12-16 20:12:11] 2025-12-16 19:09:11,911 | INFO     | process IDs to be killed: [3931044] (in reverse order)
[2025-12-16 20:12:11] 2025-12-16 19:09:12,185 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 20:12:11] 2025-12-16 19:09:12,185 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 20:12:11] 2025-12-16 19:09:12,217 | INFO     | did not find any defunct processes belonging to 3931044
[2025-12-16 20:12:11] 2025-12-16 19:09:12,247 | INFO     | did not find any defunct processes belonging to 3931044
[2025-12-16 20:12:11] 2025-12-16 19:09:12,248 | INFO     | ready for new job
[2025-12-16 20:12:11] 2025-12-16 19:09:12,248 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 20:12:11] 2025-12-16 19:09:12,251 | INFO     | ***************************************
[2025-12-16 20:12:11] 2025-12-16 19:09:12,251 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 20:12:11] 2025-12-16 19:09:12,251 | INFO     | ***************************************
[2025-12-16 20:12:11] 2025-12-16 19:09:12,251 | INFO     | 
[2025-12-16 20:12:11] 2025-12-16 19:09:12,259 | INFO     | architecture information:
[2025-12-16 20:12:11] 2025-12-16 19:09:12,260 | INFO     | executing command: cat /etc/os-release
[2025-12-16 20:12:11] 2025-12-16 19:09:12,283 | INFO     | cat /etc/os-release:
[2025-12-16 20:12:11] NAME="CentOS Linux"
[2025-12-16 20:12:11] VERSION="7 (Core)"
[2025-12-16 20:12:11] ID="centos"
[2025-12-16 20:12:11] ID_LIKE="rhel fedora"
[2025-12-16 20:12:11] VERSION_ID="7"
[2025-12-16 20:12:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 20:12:11] ANSI_COLOR="0;31"
[2025-12-16 20:12:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 20:12:11] HOME_URL="https://www.centos.org/"
[2025-12-16 20:12:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 20:12:11] 
[2025-12-16 20:12:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 20:12:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 20:12:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 20:12:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 20:12:11] 
[2025-12-16 20:12:11] 2025-12-16 19:09:12,283 | INFO     | ***************************************
[2025-12-16 20:12:11] 2025-12-16 19:09:12,786 | INFO     | executing command: df -mP /scratch/boinc/var/slot108/slots/0
[2025-12-16 20:12:11] 2025-12-16 19:09:12,812 | INFO     | sufficient remaining disk space (3337106751488 B)
[2025-12-16 20:12:11] 2025-12-16 19:09:12,813 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 20:12:11] 2025-12-16 19:09:12,813 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 20:12:11] 2025-12-16 19:09:12,813 | INFO     | update_server=False
[2025-12-16 20:12:11] 2025-12-16 19:09:12,813 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 20:12:11] 2025-12-16 19:09:12,814 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 20:12:11] 2025-12-16 19:09:12,814 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 20:12:11] 2025-12-16 19:09:12,952 | INFO     | all payload control threads have been joined
[2025-12-16 20:12:11] 2025-12-16 19:09:12,970 | INFO     | all data control threads have been joined
[2025-12-16 20:12:11] 2025-12-16 19:09:13,047 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-16 20:12:11] 2025-12-16 19:09:13,047 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-16 20:12:11] 2025-12-16 19:09:13,047 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 20:12:11] 2025-12-16 19:09:13,047 | INFO     | will abort loop
[2025-12-16 20:12:11] 2025-12-16 19:09:13,437 | INFO     | all job control threads have been joined
[2025-12-16 20:12:11] 2025-12-16 19:09:13,818 | INFO     | [job] retrieve thread has finished
[2025-12-16 20:12:11] 2025-12-16 19:09:13,958 | INFO     | [payload] control thread has finished
[2025-12-16 20:12:11] 2025-12-16 19:09:13,976 | INFO     | [data] control thread has finished
[2025-12-16 20:12:11] 2025-12-16 19:09:14,052 | INFO     | [job] job monitor thread has finished
[2025-12-16 20:12:11] 2025-12-16 19:09:14,173 | INFO     | [payload] validate_post thread has finished
[2025-12-16 20:12:11] 2025-12-16 19:09:14,174 | INFO     | [data] copytool_in thread has finished
[2025-12-16 20:12:11] 2025-12-16 19:09:14,368 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 20:12:11] 2025-12-16 19:09:14,442 | INFO     | [job] control thread has finished
[2025-12-16 20:12:11] 2025-12-16 19:09:14,467 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 20:12:11] 2025-12-16 19:09:14,479 | INFO     | [payload] failed_post thread has finished
[2025-12-16 20:12:11] 2025-12-16 19:09:14,745 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 20:12:11] 2025-12-16 19:09:14,782 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 20:12:11] 2025-12-16 19:09:14,816 | INFO     | [data] copytool_out thread has finished
[2025-12-16 20:12:11] 2025-12-16 19:09:15,183 | INFO     | [job] validate thread has finished
[2025-12-16 20:12:11] 2025-12-16 19:09:15,750 | INFO     | [job] queue monitor thread has finished
[2025-12-16 20:12:11] 2025-12-16 19:09:16,821 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 20:12:11] 2025-12-16 19:09:23,517 | INFO     | job.realtimelogging is not enabled
[2025-12-16 20:12:11] 2025-12-16 19:09:24,522 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 20:12:11] 2025-12-16 19:09:44,287 | INFO     | PID=3923288 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 20:12:11] 2025-12-16 19:09:44,287 | INFO     | .. there are 9 such processes running
[2025-12-16 20:12:11] 2025-12-16 19:09:44,288 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 20:12:11] 2025-12-16 19:09:44,288 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 20:12:11] 2025-12-16 19:09:44,288 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 20:12:11] 2025-12-16 19:10:04,778 | INFO     | [monitor] cgroup control has ended
[2025-12-16 20:12:11] 2025-12-16 19:10:05,264 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22487408596800)>', '<ExcThread(monitor, started 22486966060800)>']
[2025-12-16 20:12:11] 2025-12-16 19:10:05,399 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 20:12:11] 2025-12-16 19:10:05,399 | INFO     | [monitor] control thread has ended
[2025-12-16 20:12:11] 2025-12-16 19:10:10,289 | INFO     | all workflow threads have been joined
[2025-12-16 20:12:11] 2025-12-16 19:10:10,289 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 20:12:11] 2025-12-16 19:10:10,289 | INFO     | traces error code: 0
[2025-12-16 20:12:11] 2025-12-16 19:10:10,290 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 20:12:11] 2025-12-16 19:10:10,442 [wrapper] ==== pilot stdout END ====
[2025-12-16 20:12:11] 2025-12-16 19:10:10,446 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 20:12:11] 2025-12-16 19:10:10,450 [wrapper] pilotpid: 3923288
[2025-12-16 20:12:11] 2025-12-16 19:10:10,454 [wrapper] Pilot exit status: 0
[2025-12-16 20:12:11] 2025-12-16 19:10:10,468 [wrapper] pandaids: 6929722112
[2025-12-16 20:12:11] 2025-12-16 19:10:10,631 [wrapper] cleanup supervisor_pilot  173403 3923289
[2025-12-16 20:12:11] 2025-12-16 19:10:10,636 [wrapper] Test setup, not cleaning
[2025-12-16 20:12:11] 2025-12-16 19:10:10,640 [wrapper] apfmon messages muted
[2025-12-16 20:12:11] 2025-12-16 19:10:10,644 [wrapper] ==== wrapper stdout END ====
[2025-12-16 20:12:11] 2025-12-16 19:10:10,648 [wrapper] ==== wrapper stderr END ====
[2025-12-16 20:12:11]  *** Error codes and diagnostics ***
[2025-12-16 20:12:11]     "exeErrorCode": 0,
[2025-12-16 20:12:11]     "exeErrorDiag": "",
[2025-12-16 20:12:11]     "pilotErrorCode": 0,
[2025-12-16 20:12:11]     "pilotErrorDiag": "",
[2025-12-16 20:12:11]  *** Listing of results directory ***
[2025-12-16 20:12:11] total 445516
[2025-12-16 20:12:11] -rw-r--r-- 1 boinc boinc    579449 Dec 15 11:33 pilot3.tar.gz
[2025-12-16 20:12:11] -rwx------ 1 boinc boinc     36322 Dec 15 11:37 runpilot2-wrapper.sh
[2025-12-16 20:12:11] -rw-r--r-- 1 boinc boinc      5112 Dec 15 11:40 queuedata.json
[2025-12-16 20:12:11] -rw-r--r-- 1 boinc boinc       100 Dec 16 16:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 20:12:11] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 16:17 run_atlas
[2025-12-16 20:12:11] -rw-r--r-- 1 boinc boinc       105 Dec 16 16:17 job.xml
[2025-12-16 20:12:11] -rw-r--r-- 2 boinc boinc 224956609 Dec 16 16:17 EVNT.47898761._000647.pool.root.1
[2025-12-16 20:12:11] -rw-r--r-- 1 boinc boinc      6692 Dec 16 16:17 init_data.xml
[2025-12-16 20:12:11] -rw-r--r-- 2 boinc boinc     15847 Dec 16 16:17 start_atlas.sh
[2025-12-16 20:12:11] drwxrwx--x 2 boinc boinc      4096 Dec 16 16:17 shared
[2025-12-16 20:12:11] -rw-r--r-- 2 boinc boinc    592398 Dec 16 16:17 input.tar.gz
[2025-12-16 20:12:11] -rw-r--r-- 1 boinc boinc         0 Dec 16 16:17 boinc_lockfile
[2025-12-16 20:12:11] -rw-r--r-- 1 boinc boinc      2508 Dec 16 16:17 pandaJob.out
[2025-12-16 20:12:11] -rw------- 1 boinc boinc    987386 Dec 16 16:17 agis_schedconf.cvmfs.json
[2025-12-16 20:12:11] drwx------ 5 boinc boinc      4096 Dec 16 16:17 pilot3
[2025-12-16 20:12:11] -rw------- 1 boinc boinc 222682413 Dec 16 20:08 HITS.47898763._016198.pool.root.1
[2025-12-16 20:12:11] -rw-r--r-- 1 boinc boinc       529 Dec 16 20:08 boinc_task_state.xml
[2025-12-16 20:12:11] -rw------- 1 boinc boinc      1028 Dec 16 20:08 memory_monitor_summary.json
[2025-12-16 20:12:11] -rw------- 1 boinc boinc   1516240 Dec 16 20:09 agis_ddmendpoints.agis.ALL.json
[2025-12-16 20:12:11] -rw------- 1 boinc boinc    403771 Dec 16 20:09 log.47898763._016198.job.log.tgz.1
[2025-12-16 20:12:11] -rw------- 1 boinc boinc      7785 Dec 16 20:09 heartbeat.json
[2025-12-16 20:12:11] -rw------- 1 boinc boinc        95 Dec 16 20:09 pilot_heartbeat.json
[2025-12-16 20:12:11] -rw------- 1 boinc boinc      5093 Dec 16 20:10 pilotlog.txt
[2025-12-16 20:12:11] -rw------- 1 boinc boinc   1923625 Dec 16 20:10 log.47898763._016198.job.log.1
[2025-12-16 20:12:11] -rw------- 1 boinc boinc       357 Dec 16 20:10 output.list
[2025-12-16 20:12:11] -rw-r--r-- 1 boinc boinc       620 Dec 16 20:10 runtime_log
[2025-12-16 20:12:11] -rw------- 1 boinc boinc   2344960 Dec 16 20:10 result.tar.gz
[2025-12-16 20:12:11] -rw-r--r-- 1 boinc boinc      9223 Dec 16 20:10 runtime_log.err
[2025-12-16 20:12:11] -rw------- 1 boinc boinc       666 Dec 16 20:10 Z0eLDml8Kp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmvvXKDmOnE0zn.diag
[2025-12-16 20:12:11] -rw-r--r-- 1 boinc boinc        26 Dec 16 20:12 wrapper_checkpoint.txt
[2025-12-16 20:12:11] -rw-r--r-- 1 boinc boinc      8192 Dec 16 20:12 boinc_mmap_file
[2025-12-16 20:12:11] -rw-r--r-- 1 boinc boinc     21089 Dec 16 20:12 stderr.txt
[2025-12-16 20:12:11] HITS file was successfully produced:
[2025-12-16 20:12:11] -rw------- 1 boinc boinc 222682413 Dec 16 20:08 shared/HITS.pool.root.1
[2025-12-16 20:12:11]  *** Contents of shared directory: ***
[2025-12-16 20:12:11] total 440048
[2025-12-16 20:12:11] -rw-r--r-- 2 boinc boinc 224956609 Dec 16 16:17 ATLAS.root_0
[2025-12-16 20:12:11] -rw-r--r-- 2 boinc boinc     15847 Dec 16 16:17 start_atlas.sh
[2025-12-16 20:12:11] -rw-r--r-- 2 boinc boinc    592398 Dec 16 16:17 input.tar.gz
[2025-12-16 20:12:11] -rw------- 1 boinc boinc 222682413 Dec 16 20:08 HITS.pool.root.1
[2025-12-16 20:12:11] -rw------- 1 boinc boinc   2344960 Dec 16 20:10 result.tar.gz
20:12:13 (3919129): run_atlas exited; CPU time 53982.627695
20:12:13 (3919129): called boinc_finish(0)

</stderr_txt>
]]>

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