Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:00:56 (16638): wrapper (7.7.26015): starting
03:00:56 (16638): wrapper: running run_atlas (--nthreads 8)
[2025-12-16 03:00:56] Arguments: --nthreads 8
[2025-12-16 03:00:56] Threads: 8
[2025-12-16 03:00:56] Checking for CVMFS
[2025-12-16 03:00:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 03:00:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 03:00:57] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 03:00:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 03:00:58] 2.11.2.0 6904 228 54816 154053 3 217 12690781 25165825 4699 130560 0 509206 99.989 71974 1778 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-16 03:00:58] CVMFS is ok
[2025-12-16 03:00:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 03:00:58] Checking for apptainer binary...
[2025-12-16 03:00:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 03:00:58] Running /usr/bin/apptainer --version
[2025-12-16 03:00:58] apptainer version 1.3.2-1.el7
[2025-12-16 03:00:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 03:01:20] cg-vwn474.simple-grid.lan
[2025-12-16 03:01:20] apptainer works
[2025-12-16 03:01:20] Set ATHENA_PROC_NUMBER=8
[2025-12-16 03:01:20] Set ATHENA_CORE_NUMBER=8
[2025-12-16 03:01:20] Starting ATLAS job with PandaID=6931596015
[2025-12-16 03:01:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 07:10:08]  *** The last 200 lines of the pilot log: ***
[2025-12-16 07:10:08] 2025-12-16 06:09:07,749 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-12-16 07:10:08] 2025-12-16 06:09:07,751 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6931596015/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 07:10:08] 2025-12-16 06:09:07,752 | INFO     | extracted standard info from prmon json
[2025-12-16 07:10:08] 2025-12-16 06:09:07,752 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 07:10:08] 2025-12-16 06:09:07,752 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 07:10:08] 2025-12-16 06:09:07,753 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 07:10:08] 2025-12-16 06:09:07,753 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 07:10:08] 2025-12-16 06:09:07,758 | INFO     | fitting pss+swap vs Time
[2025-12-16 07:10:08] 2025-12-16 06:09:07,759 | INFO     | sum of square deviations: 3871990738.0
[2025-12-16 07:10:08] 2025-12-16 06:09:07,761 | INFO     | sum of deviations: 55174394592.00001
[2025-12-16 07:10:08] 2025-12-16 06:09:07,761 | INFO     | mean x: 1765858185.5
[2025-12-16 07:10:08] 2025-12-16 06:09:07,761 | INFO     | mean y: 2464483.853448276
[2025-12-16 07:10:08] 2025-12-16 06:09:07,761 | INFO     | intersect: -25160342690.271088
[2025-12-16 07:10:08] 2025-12-16 06:09:07,761 | INFO     | chi2: 5.39229285704429
[2025-12-16 07:10:08] 2025-12-16 06:09:07,762 | INFO     | sum of square deviations: 3627000098.0
[2025-12-16 07:10:08] 2025-12-16 06:09:07,764 | INFO     | sum of deviations: 69230460441.00002
[2025-12-16 07:10:08] 2025-12-16 06:09:07,764 | INFO     | mean x: 1765858033.0
[2025-12-16 07:10:08] 2025-12-16 06:09:07,764 | INFO     | mean y: 2473065.189427313
[2025-12-16 07:10:08] 2025-12-16 06:09:07,764 | INFO     | intersect: -33703388912.989265
[2025-12-16 07:10:08] 2025-12-16 06:09:07,765 | INFO     | chi2: 4.659112655869858
[2025-12-16 07:10:08] 2025-12-16 06:09:07,765 | INFO     | current chi2=4.659112655869858 (change=13.596817172432177 %)
[2025-12-16 07:10:08] 2025-12-16 06:09:07,765 | INFO     | right removable region: 226
[2025-12-16 07:10:08] 2025-12-16 06:09:07,766 | INFO     | sum of square deviations: 3627000098.0
[2025-12-16 07:10:08] 2025-12-16 06:09:07,767 | INFO     | sum of deviations: -19482961715.0
[2025-12-16 07:10:08] 2025-12-16 06:09:07,768 | INFO     | mean x: 1765858338.0
[2025-12-16 07:10:08] 2025-12-16 06:09:07,768 | INFO     | mean y: 2510871.894273128
[2025-12-16 07:10:08] 2025-12-16 06:09:07,768 | INFO     | intersect: 9488077308.00732
[2025-12-16 07:10:08] 2025-12-16 06:09:07,768 | INFO     | chi2: 1.3452358852400428
[2025-12-16 07:10:08] 2025-12-16 06:09:07,769 | INFO     | current chi2=1.3452358852400428 (change=75.05261822931823 %)
[2025-12-16 07:10:08] 2025-12-16 06:09:07,769 | INFO     | sum of square deviations: 3392567795.5
[2025-12-16 07:10:08] 2025-12-16 06:09:07,771 | INFO     | sum of deviations: -41194674787.49999
[2025-12-16 07:10:08] 2025-12-16 06:09:07,771 | INFO     | mean x: 1765858490.5
[2025-12-16 07:10:08] 2025-12-16 06:09:07,771 | INFO     | mean y: 2524885.364864865
[2025-12-16 07:10:08] 2025-12-16 06:09:07,771 | INFO     | intersect: 21444680391.69928
[2025-12-16 07:10:08] 2025-12-16 06:09:07,772 | INFO     | chi2: 0.8494283001265843
[2025-12-16 07:10:08] 2025-12-16 06:09:07,772 | INFO     | current chi2=0.8494283001265843 (change=36.856553601748956 %)
[2025-12-16 07:10:08] 2025-12-16 06:09:07,772 | INFO     | sum of square deviations: 3168461268.0
[2025-12-16 07:10:08] 2025-12-16 06:09:07,774 | INFO     | sum of deviations: -39729191054.0
[2025-12-16 07:10:08] 2025-12-16 06:09:07,774 | INFO     | mean x: 1765858643.0
[2025-12-16 07:10:08] 2025-12-16 06:09:07,775 | INFO     | mean y: 2523882.949308756
[2025-12-16 07:10:08] 2025-12-16 06:09:07,775 | INFO     | intersect: 22144544715.158577
[2025-12-16 07:10:08] 2025-12-16 06:09:07,775 | INFO     | chi2: 0.8491729468184182
[2025-12-16 07:10:08] 2025-12-16 06:09:07,775 | INFO     | current chi2=0.8491729468184182 (change=0.030061784864963817 %)
[2025-12-16 07:10:08] 2025-12-16 06:09:07,775 | INFO     | left removable region: 30
[2025-12-16 07:10:08] 2025-12-16 06:09:07,776 | INFO     | sum of square deviations: 2334722845.0
[2025-12-16 07:10:08] 2025-12-16 06:09:07,777 | INFO     | sum of deviations: -16274544074.499998
[2025-12-16 07:10:08] 2025-12-16 06:09:07,778 | INFO     | mean x: 1765858917.5
[2025-12-16 07:10:08] 2025-12-16 06:09:07,778 | INFO     | mean y: 2527963.4846938774
[2025-12-16 07:10:08] 2025-12-16 06:09:07,778 | INFO     | intersect: 12311718685.522026
[2025-12-16 07:10:08] 2025-12-16 06:09:07,778 | INFO     | chi2: 0.05098023645903879
[2025-12-16 07:10:08] 2025-12-16 06:09:07,778 | INFO     | current memory leak: -6.97 B/s (using 196 data points, chi2=0.05)
[2025-12-16 07:10:08] 2025-12-16 06:09:07,779 | INFO     | could have reported an average CPU frequency of 2249 MHz (11 samples)
[2025-12-16 07:10:08] 2025-12-16 06:09:07,779 | INFO     | ..............................
[2025-12-16 07:10:08] 2025-12-16 06:09:07,779 | INFO     | . Timing measurements:
[2025-12-16 07:10:08] 2025-12-16 06:09:07,780 | INFO     | . get job = 0 s
[2025-12-16 07:10:08] 2025-12-16 06:09:07,780 | INFO     | . initial setup = 4 s
[2025-12-16 07:10:08] 2025-12-16 06:09:07,780 | INFO     | . payload setup = 125 s
[2025-12-16 07:10:08] 2025-12-16 06:09:07,780 | INFO     | . stage-in = 0 s
[2025-12-16 07:10:08] 2025-12-16 06:09:07,780 | INFO     | . payload execution = 14268 s
[2025-12-16 07:10:08] 2025-12-16 06:09:07,780 | INFO     | . stage-out = 3 s
[2025-12-16 07:10:08] 2025-12-16 06:09:07,780 | INFO     | . log creation = 1 s
[2025-12-16 07:10:08] 2025-12-16 06:09:07,780 | INFO     | ..............................
[2025-12-16 07:10:08] 2025-12-16 06:09:08,331 | INFO     | 
[2025-12-16 07:10:08] 2025-12-16 06:09:08,331 | INFO     | job summary report
[2025-12-16 07:10:08] 2025-12-16 06:09:08,332 | INFO     | --------------------------------------------------
[2025-12-16 07:10:08] 2025-12-16 06:09:08,332 | INFO     | PanDA job id: 6931596015
[2025-12-16 07:10:08] 2025-12-16 06:09:08,332 | INFO     | task id: 47899050
[2025-12-16 07:10:08] 2025-12-16 06:09:08,332 | INFO     | errors: (none)
[2025-12-16 07:10:08] 2025-12-16 06:09:08,332 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 07:10:08] 2025-12-16 06:09:08,332 | INFO     | pilot state: finished 
[2025-12-16 07:10:08] 2025-12-16 06:09:08,332 | INFO     | transexitcode: 0
[2025-12-16 07:10:08] 2025-12-16 06:09:08,332 | INFO     | exeerrorcode: 0
[2025-12-16 07:10:08] 2025-12-16 06:09:08,332 | INFO     | exeerrordiag: 
[2025-12-16 07:10:08] 2025-12-16 06:09:08,333 | INFO     | exitcode: 0
[2025-12-16 07:10:08] 2025-12-16 06:09:08,333 | INFO     | exitmsg: OK
[2025-12-16 07:10:08] 2025-12-16 06:09:08,333 | INFO     | cpuconsumptiontime: 53095 s
[2025-12-16 07:10:08] 2025-12-16 06:09:08,333 | INFO     | nevents: 400
[2025-12-16 07:10:08] 2025-12-16 06:09:08,333 | INFO     | neventsw: 0
[2025-12-16 07:10:08] 2025-12-16 06:09:08,333 | INFO     | pid: 26986
[2025-12-16 07:10:08] 2025-12-16 06:09:08,333 | INFO     | pgrp: 26986
[2025-12-16 07:10:08] 2025-12-16 06:09:08,333 | INFO     | corecount: 8
[2025-12-16 07:10:08] 2025-12-16 06:09:08,333 | INFO     | event service: False
[2025-12-16 07:10:08] 2025-12-16 06:09:08,334 | INFO     | sizes: {0: 2283762, 1: 2283961, 12: 2283961, 23: 2283989, 33: 2284017, 44: 2284073, 55: 2284229, 66: 2284257, 76: 2284285, 87: 2284341, 90: 2284631, 98: 2284939, 1
[2025-12-16 07:10:08] 2025-12-16 06:09:08,334 | INFO     | --------------------------------------------------
[2025-12-16 07:10:08] 2025-12-16 06:09:08,334 | INFO     | 
[2025-12-16 07:10:08] 2025-12-16 06:09:08,334 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-12-16 07:10:08] 2025-12-16 06:09:08,600 | INFO     | PID=20457 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 07:10:08] 2025-12-16 06:09:08,600 | INFO     | .. there are 9 such processes running
[2025-12-16 07:10:08] 2025-12-16 06:09:08,601 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 07:10:08] 2025-12-16 06:09:08,601 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 07:10:08] 2025-12-16 06:09:08,601 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 07:10:08] 2025-12-16 06:09:08,601 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 07:10:08] 2025-12-16 06:09:08,601 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 07:10:08] 2025-12-16 06:09:08,601 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 07:10:08] 2025-12-16 06:09:08,601 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 07:10:08] 2025-12-16 06:09:08,602 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 07:10:08] 2025-12-16 06:09:08,602 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 07:10:08] 2025-12-16 06:09:08,602 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 07:10:08] 2025-12-16 06:09:08,602 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 07:10:08] 2025-12-16 06:09:08,602 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 07:10:08] 2025-12-16 06:09:08,602 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 07:10:08] 2025-12-16 06:09:08,602 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 07:10:08] 2025-12-16 06:09:08,602 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 07:10:08] 2025-12-16 06:09:08,602 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 07:10:08] 2025-12-16 06:09:08,603 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 07:10:08] 2025-12-16 06:09:08,603 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 07:10:08] 2025-12-16 06:09:08,603 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 07:10:08] 2025-12-16 06:09:08,603 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 07:10:08] 2025-12-16 06:09:08,603 | INFO     | job 6931596015 has completed (purged errors)
[2025-12-16 07:10:08] 2025-12-16 06:09:08,603 | INFO     | overall cleanup function is called
[2025-12-16 07:10:08] 2025-12-16 06:09:09,612 | INFO     | --- collectZombieJob: --- 10, [26986]
[2025-12-16 07:10:08] 2025-12-16 06:09:09,612 | INFO     | zombie collector waiting for pid 26986
[2025-12-16 07:10:08] 2025-12-16 06:09:09,612 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 07:10:08] 2025-12-16 06:09:09,613 | INFO     | collected zombie processes
[2025-12-16 07:10:08] 2025-12-16 06:09:09,613 | INFO     | will attempt to kill all subprocesses of pid=26986
[2025-12-16 07:10:08] 2025-12-16 06:09:09,729 | INFO     | process IDs to be killed: [26986] (in reverse order)
[2025-12-16 07:10:08] 2025-12-16 06:09:10,760 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 07:10:08] 2025-12-16 06:09:10,760 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 07:10:08] 2025-12-16 06:09:10,763 | INFO     | did not find any defunct processes belonging to 26986
[2025-12-16 07:10:08] 2025-12-16 06:09:10,766 | INFO     | did not find any defunct processes belonging to 26986
[2025-12-16 07:10:08] 2025-12-16 06:09:10,766 | INFO     | ready for new job
[2025-12-16 07:10:08] 2025-12-16 06:09:10,766 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 07:10:08] 2025-12-16 06:09:10,768 | INFO     | ***************************************
[2025-12-16 07:10:08] 2025-12-16 06:09:10,768 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 07:10:08] 2025-12-16 06:09:10,768 | INFO     | ***************************************
[2025-12-16 07:10:08] 2025-12-16 06:09:10,768 | INFO     | 
[2025-12-16 07:10:08] 2025-12-16 06:09:10,769 | INFO     | pilot is running in a VM
[2025-12-16 07:10:08] 2025-12-16 06:09:10,769 | INFO     | architecture information:
[2025-12-16 07:10:08] 2025-12-16 06:09:10,783 | INFO     | executing command: cat /etc/os-release
[2025-12-16 07:10:08] 2025-12-16 06:09:10,880 | INFO     | cat /etc/os-release:
[2025-12-16 07:10:08] NAME="CentOS Linux"
[2025-12-16 07:10:08] VERSION="7 (Core)"
[2025-12-16 07:10:08] ID="centos"
[2025-12-16 07:10:08] ID_LIKE="rhel fedora"
[2025-12-16 07:10:08] VERSION_ID="7"
[2025-12-16 07:10:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 07:10:08] ANSI_COLOR="0;31"
[2025-12-16 07:10:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 07:10:08] HOME_URL="https://www.centos.org/"
[2025-12-16 07:10:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 07:10:08] 
[2025-12-16 07:10:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 07:10:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 07:10:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 07:10:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 07:10:08] 
[2025-12-16 07:10:08] 2025-12-16 06:09:10,880 | INFO     | ***************************************
[2025-12-16 07:10:08] 2025-12-16 06:09:11,382 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-12-16 07:10:08] 2025-12-16 06:09:11,525 | INFO     | sufficient remaining disk space (496012099584 B)
[2025-12-16 07:10:08] 2025-12-16 06:09:11,525 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 07:10:08] 2025-12-16 06:09:11,525 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 07:10:08] 2025-12-16 06:09:11,526 | INFO     | update_server=False
[2025-12-16 07:10:08] 2025-12-16 06:09:11,526 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 07:10:08] 2025-12-16 06:09:11,635 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 07:10:08] 2025-12-16 06:09:11,975 | INFO     | all data control threads have been joined
[2025-12-16 07:10:08] 2025-12-16 06:09:12,291 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 07:10:08] 2025-12-16 06:09:12,291 | INFO     | aborting loop
[2025-12-16 07:10:08] 2025-12-16 06:09:12,437 | INFO     | all payload control threads have been joined
[2025-12-16 07:10:08] 2025-12-16 06:09:12,508 | INFO     | all job control threads have been joined
[2025-12-16 07:10:08] 2025-12-16 06:09:12,531 | INFO     | [job] retrieve thread has finished
[2025-12-16 07:10:08] 2025-12-16 06:09:12,540 | INFO     | [job] validate thread has finished
[2025-12-16 07:10:08] 2025-12-16 06:09:12,571 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 07:10:08] 2025-12-16 06:09:12,855 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 07:10:08] 2025-12-16 06:09:12,915 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 07:10:08] 2025-12-16 06:09:12,981 | INFO     | [data] control thread has finished
[2025-12-16 07:10:08] 2025-12-16 06:09:12,994 | INFO     | [payload] validate_post thread has finished
[2025-12-16 07:10:08] 2025-12-16 06:09:13,299 | INFO     | [job] job monitor thread has finished
[2025-12-16 07:10:08] 2025-12-16 06:09:13,310 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 07:10:08] 2025-12-16 06:09:13,443 | INFO     | [payload] control thread has finished
[2025-12-16 07:10:08] 2025-12-16 06:09:13,514 | INFO     | [job] control thread has finished
[2025-12-16 07:10:08] 2025-12-16 06:09:13,526 | INFO     | [payload] failed_post thread has finished
[2025-12-16 07:10:08] 2025-12-16 06:09:13,642 | INFO     | [data] copytool_out thread has finished
[2025-12-16 07:10:08] 2025-12-16 06:09:13,781 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 07:10:08] 2025-12-16 06:09:13,921 | INFO     | [job] queue monitor thread has finished
[2025-12-16 07:10:08] 2025-12-16 06:09:13,986 | INFO     | [data] copytool_in thread has finished
[2025-12-16 07:10:08] 2025-12-16 06:09:14,185 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 07:10:08] 2025-12-16 06:09:18,194 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 07:10:08] 2025-12-16 06:09:40,813 | INFO     | PID=20457 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-16 07:10:08] 2025-12-16 06:09:40,813 | INFO     | .. there are 9 such processes running
[2025-12-16 07:10:08] 2025-12-16 06:09:40,814 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 07:10:08] 2025-12-16 06:09:40,814 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 07:10:08] 2025-12-16 06:09:40,814 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 07:10:08] 2025-12-16 06:09:57,553 | INFO     | [monitor] cgroup control has ended
[2025-12-16 07:10:08] 2025-12-16 06:09:58,797 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140627718620992)>', '<ExcThread(monitor, started 140627295598336)>']
[2025-12-16 07:10:08] 2025-12-16 06:09:58,921 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 07:10:08] 2025-12-16 06:09:58,921 | INFO     | [monitor] control thread has ended
[2025-12-16 07:10:08] 2025-12-16 06:10:03,823 | INFO     | all workflow threads have been joined
[2025-12-16 07:10:08] 2025-12-16 06:10:03,823 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 07:10:08] 2025-12-16 06:10:03,824 | INFO     | traces error code: 0
[2025-12-16 07:10:08] 2025-12-16 06:10:03,824 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 07:10:08] 2025-12-16 06:10:04,201 [wrapper] ==== pilot stdout END ====
[2025-12-16 07:10:08] 2025-12-16 06:10:04,256 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 07:10:08] 2025-12-16 06:10:04,319 [wrapper] pilotpid: 20457
[2025-12-16 07:10:08] 2025-12-16 06:10:04,379 [wrapper] Pilot exit status: 0
[2025-12-16 07:10:08] 2025-12-16 06:10:04,929 [wrapper] pandaids: 6931596015
[2025-12-16 07:10:08] 2025-12-16 06:10:05,957 [wrapper] cleanup supervisor_pilot  4029 20458
[2025-12-16 07:10:08] 2025-12-16 06:10:06,064 [wrapper] Test setup, not cleaning
[2025-12-16 07:10:08] 2025-12-16 06:10:06,181 [wrapper] apfmon messages muted
[2025-12-16 07:10:08] 2025-12-16 06:10:06,257 [wrapper] ==== wrapper stdout END ====
[2025-12-16 07:10:08] 2025-12-16 06:10:06,289 [wrapper] ==== wrapper stderr END ====
[2025-12-16 07:10:08]  *** Error codes and diagnostics ***
[2025-12-16 07:10:08]     "exeErrorCode": 0,
[2025-12-16 07:10:08]     "exeErrorDiag": "",
[2025-12-16 07:10:08]     "pilotErrorCode": 0,
[2025-12-16 07:10:08]     "pilotErrorDiag": "",
[2025-12-16 07:10:08]  *** Listing of results directory ***
[2025-12-16 07:10:08] total 375548
[2025-12-16 07:10:08] -rw-r--r--. 1 boinc boinc    579449 Dec 15 11:33 pilot3.tar.gz
[2025-12-16 07:10:08] -rwx------. 1 boinc boinc     36322 Dec 15 11:37 runpilot2-wrapper.sh
[2025-12-16 07:10:08] -rw-r--r--. 1 boinc boinc      5112 Dec 15 11:40 queuedata.json
[2025-12-16 07:10:08] -rw-r--r--. 1 boinc boinc       100 Dec 16 03:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 07:10:08] -rwxr-xr-x. 1 boinc boinc      7986 Dec 16 03:00 run_atlas
[2025-12-16 07:10:08] -rw-r--r--. 1 boinc boinc       105 Dec 16 03:00 job.xml
[2025-12-16 07:10:08] -rw-r--r--. 2 boinc boinc 195724068 Dec 16 03:00 EVNT.47899048._000081.pool.root.1
[2025-12-16 07:10:08] -rw-r--r--. 2 boinc boinc    592387 Dec 16 03:00 input.tar.gz
[2025-12-16 07:10:08] -rw-r--r--. 1 boinc boinc      6393 Dec 16 03:00 init_data.xml
[2025-12-16 07:10:08] -rw-r--r--. 2 boinc boinc     15847 Dec 16 03:00 start_atlas.sh
[2025-12-16 07:10:08] drwxrwx--x. 2 boinc boinc        68 Dec 16 03:00 shared
[2025-12-16 07:10:08] -rw-r--r--. 1 boinc boinc         0 Dec 16 03:00 boinc_lockfile
[2025-12-16 07:10:08] -rw-r--r--. 1 boinc boinc      2490 Dec 16 03:01 pandaJob.out
[2025-12-16 07:10:08] -rw-------. 1 boinc boinc    994531 Dec 16 03:04 agis_schedconf.cvmfs.json
[2025-12-16 07:10:08] drwx------. 5 boinc boinc      4096 Dec 16 03:04 pilot3
[2025-12-16 07:10:08] -rw-------. 1 boinc boinc 180061090 Dec 16 07:06 HITS.47899050._002026.pool.root.1
[2025-12-16 07:10:08] -rw-r--r--. 1 boinc boinc       531 Dec 16 07:06 boinc_task_state.xml
[2025-12-16 07:10:08] -rw-------. 1 boinc boinc      1018 Dec 16 07:07 memory_monitor_summary.json
[2025-12-16 07:10:08] -rw-------. 1 boinc boinc   1516240 Dec 16 07:07 agis_ddmendpoints.agis.ALL.json
[2025-12-16 07:10:08] -rw-------. 1 boinc boinc    473071 Dec 16 07:07 log.47899050._002026.job.log.tgz.1
[2025-12-16 07:10:08] -rw-------. 1 boinc boinc      7781 Dec 16 07:09 heartbeat.json
[2025-12-16 07:10:08] -rw-------. 1 boinc boinc        95 Dec 16 07:09 pilot_heartbeat.json
[2025-12-16 07:10:08] -rw-------. 1 boinc boinc      4884 Dec 16 07:10 pilotlog.txt
[2025-12-16 07:10:08] -rw-r--r--. 1 boinc boinc      8192 Dec 16 07:10 boinc_mmap_file
[2025-12-16 07:10:08] -rw-r--r--. 1 boinc boinc        28 Dec 16 07:10 wrapper_checkpoint.txt
[2025-12-16 07:10:08] -rw-------. 1 boinc boinc   1961286 Dec 16 07:10 log.47899050._002026.job.log.1
[2025-12-16 07:10:08] -rw-------. 1 boinc boinc       357 Dec 16 07:10 output.list
[2025-12-16 07:10:08] -rw-r--r--. 1 boinc boinc       620 Dec 16 07:10 runtime_log
[2025-12-16 07:10:08] -rw-------. 1 boinc boinc   2457600 Dec 16 07:10 result.tar.gz
[2025-12-16 07:10:08] -rw-------. 1 boinc boinc       657 Dec 16 07:10 yLKODmR8Kp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYsXKDm3aKdkn.diag
[2025-12-16 07:10:08] -rw-r--r--. 1 boinc boinc      8817 Dec 16 07:10 runtime_log.err
[2025-12-16 07:10:08] -rw-r--r--. 1 boinc boinc     20872 Dec 16 07:10 stderr.txt
[2025-12-16 07:10:08] HITS file was successfully produced:
[2025-12-16 07:10:08] -rw-------. 1 boinc boinc 180061090 Dec 16 07:06 shared/HITS.pool.root.1
[2025-12-16 07:10:08]  *** Contents of shared directory: ***
[2025-12-16 07:10:08] total 369980
[2025-12-16 07:10:08] -rw-r--r--. 2 boinc boinc 195724068 Dec 16 03:00 ATLAS.root_0
[2025-12-16 07:10:08] -rw-r--r--. 2 boinc boinc    592387 Dec 16 03:00 input.tar.gz
[2025-12-16 07:10:08] -rw-r--r--. 2 boinc boinc     15847 Dec 16 03:00 start_atlas.sh
[2025-12-16 07:10:08] -rw-------. 1 boinc boinc 180061090 Dec 16 07:06 HITS.pool.root.1
[2025-12-16 07:10:08] -rw-------. 1 boinc boinc   2457600 Dec 16 07:10 result.tar.gz
07:10:09 (16638): run_atlas exited; CPU time 53290.005217
07:10:09 (16638): called boinc_finish(0)

</stderr_txt>
]]>

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