Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:43:33 (3552485): wrapper (7.7.26015): starting
13:43:33 (3552485): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 13:43:33] Arguments: --nthreads 4
[2025-12-16 13:43:33] Threads: 4
[2025-12-16 13:43:33] Checking for CVMFS
[2025-12-16 13:43:33] No cvmfs_config command found, will try listing directly
[2025-12-16 13:43:33] CVMFS is ok
[2025-12-16 13:43:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 13:43:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 13:43:33] Further information can be found at the LHC@home message board.
[2025-12-16 13:43:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 13:43:33] Checking for apptainer binary...
[2025-12-16 13:43:33] which: no apptainer in ((null))
[2025-12-16 13:43:33] apptainer is not installed, using version from CVMFS
[2025-12-16 13:43:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 13:43:33] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot108/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2025-12-16 13:43:33] apptainer works
[2025-12-16 13:43:33] Set ATHENA_PROC_NUMBER=4
[2025-12-16 13:43:33] Set ATHENA_CORE_NUMBER=4
[2025-12-16 13:43:33] Starting ATLAS job with PandaID=6931596111
[2025-12-16 13:43:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot108/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 16:17:17]  *** The last 200 lines of the pilot log: ***
[2025-12-16 16:17:17] 2025-12-16 15:15:23,358 | INFO     | extracted standard info from prmon json
[2025-12-16 16:17:17] 2025-12-16 15:15:23,359 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 16:17:17] 2025-12-16 15:15:23,359 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 16:17:17] 2025-12-16 15:15:23,359 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 16:17:17] 2025-12-16 15:15:23,359 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 16:17:17] 2025-12-16 15:15:23,363 | INFO     | fitting pss+swap vs Time
[2025-12-16 16:17:17] 2025-12-16 15:15:23,363 | INFO     | sum of square deviations: 1025693650.0
[2025-12-16 16:17:17] 2025-12-16 15:15:23,364 | INFO     | sum of deviations: -26636584398.0
[2025-12-16 16:17:17] 2025-12-16 15:15:23,364 | INFO     | mean x: 1765893576.0
[2025-12-16 16:17:17] 2025-12-16 15:15:23,364 | INFO     | mean y: 2349753.1677852347
[2025-12-16 16:17:17] 2025-12-16 15:15:23,364 | INFO     | intersect: 45861435723.925255
[2025-12-16 16:17:17] 2025-12-16 15:15:23,368 | INFO     | chi2: 2.1801649104858822
[2025-12-16 16:17:17] 2025-12-16 15:15:23,368 | INFO     | sum of square deviations: 925859220.0
[2025-12-16 16:17:17] 2025-12-16 15:15:23,369 | INFO     | sum of deviations: -17169591187.999998
[2025-12-16 16:17:17] 2025-12-16 15:15:23,369 | INFO     | mean x: 1765893423.5
[2025-12-16 16:17:17] 2025-12-16 15:15:23,369 | INFO     | mean y: 2363863.027777778
[2025-12-16 16:17:17] 2025-12-16 15:15:23,369 | INFO     | intersect: 32749964694.90452
[2025-12-16 16:17:17] 2025-12-16 15:15:23,369 | INFO     | chi2: 1.5228376439386893
[2025-12-16 16:17:17] 2025-12-16 15:15:23,370 | INFO     | current chi2=1.5228376439386893 (change=30.15034612224347 %)
[2025-12-16 16:17:17] 2025-12-16 15:15:23,370 | INFO     | sum of square deviations: 832722590.0
[2025-12-16 16:17:17] 2025-12-16 15:15:23,371 | INFO     | sum of deviations: -16317298882.999996
[2025-12-16 16:17:17] 2025-12-16 15:15:23,371 | INFO     | mean x: 1765893271.0
[2025-12-16 16:17:17] 2025-12-16 15:15:23,371 | INFO     | mean y: 2365260.3165467624
[2025-12-16 16:17:17] 2025-12-16 15:15:23,371 | INFO     | intersect: 34605255399.73922
[2025-12-16 16:17:17] 2025-12-16 15:15:23,371 | INFO     | chi2: 1.5178413905239767
[2025-12-16 16:17:17] 2025-12-16 15:15:23,371 | INFO     | current chi2=1.5178413905239767 (change=0.328088383853591 %)
[2025-12-16 16:17:17] 2025-12-16 15:15:23,371 | INFO     | right removable region: 138
[2025-12-16 16:17:17] 2025-12-16 15:15:23,372 | INFO     | sum of square deviations: 925859220.0
[2025-12-16 16:17:17] 2025-12-16 15:15:23,373 | INFO     | sum of deviations: -40518478929.50001
[2025-12-16 16:17:17] 2025-12-16 15:15:23,373 | INFO     | mean x: 1765893728.5
[2025-12-16 16:17:17] 2025-12-16 15:15:23,373 | INFO     | mean y: 2370398.1180555555
[2025-12-16 16:17:17] 2025-12-16 15:15:23,373 | INFO     | intersect: 77283371963.30576
[2025-12-16 16:17:17] 2025-12-16 15:15:23,373 | INFO     | chi2: 0.9733992135451286
[2025-12-16 16:17:17] 2025-12-16 15:15:23,373 | INFO     | current chi2=0.9733992135451286 (change=55.35203741407837 %)
[2025-12-16 16:17:17] 2025-12-16 15:15:23,374 | INFO     | sum of square deviations: 832722590.0
[2025-12-16 16:17:17] 2025-12-16 15:15:23,374 | INFO     | sum of deviations: -35165906531.0
[2025-12-16 16:17:17] 2025-12-16 15:15:23,374 | INFO     | mean x: 1765893881.0
[2025-12-16 16:17:17] 2025-12-16 15:15:23,375 | INFO     | mean y: 2361588.1151079135
[2025-12-16 16:17:17] 2025-12-16 15:15:23,375 | INFO     | intersect: 74576127099.76149
[2025-12-16 16:17:17] 2025-12-16 15:15:23,375 | INFO     | chi2: 0.9647295442599687
[2025-12-16 16:17:17] 2025-12-16 15:15:23,375 | INFO     | current chi2=0.9647295442599687 (change=0.8906591627072385 %)
[2025-12-16 16:17:17] 2025-12-16 15:15:23,375 | INFO     | left removable region: 20
[2025-12-16 16:17:17] 2025-12-16 15:15:23,375 | INFO     | sum of square deviations: 509440249.5
[2025-12-16 16:17:17] 2025-12-16 15:15:23,376 | INFO     | sum of deviations: -11703608840.0
[2025-12-16 16:17:17] 2025-12-16 15:15:23,376 | INFO     | mean x: 1765893850.5
[2025-12-16 16:17:17] 2025-12-16 15:15:23,376 | INFO     | mean y: 2351230.3559322036
[2025-12-16 16:17:17] 2025-12-16 15:15:23,376 | INFO     | intersect: 40571055606.37999
[2025-12-16 16:17:17] 2025-12-16 15:15:23,377 | INFO     | chi2: 0.18885170956559147
[2025-12-16 16:17:17] 2025-12-16 15:15:23,377 | INFO     | current memory leak: -22.97 B/s (using 118 data points, chi2=0.19)
[2025-12-16 16:17:17] 2025-12-16 15:15:23,377 | INFO     | could have reported an average CPU frequency of 2681 MHz (9 samples)
[2025-12-16 16:17:17] 2025-12-16 15:15:23,378 | INFO     | ..............................
[2025-12-16 16:17:17] 2025-12-16 15:15:23,378 | INFO     | . Timing measurements:
[2025-12-16 16:17:17] 2025-12-16 15:15:23,378 | INFO     | . get job = 0 s
[2025-12-16 16:17:17] 2025-12-16 15:15:23,378 | INFO     | . initial setup = 1 s
[2025-12-16 16:17:17] 2025-12-16 15:15:23,378 | INFO     | . payload setup = 8 s
[2025-12-16 16:17:17] 2025-12-16 15:15:23,378 | INFO     | . stage-in = 0 s
[2025-12-16 16:17:17] 2025-12-16 15:15:23,378 | INFO     | . payload execution = 9051 s
[2025-12-16 16:17:17] 2025-12-16 15:15:23,378 | INFO     | . stage-out = 0 s
[2025-12-16 16:17:17] 2025-12-16 15:15:23,378 | INFO     | . log creation = 0 s
[2025-12-16 16:17:17] 2025-12-16 15:15:23,378 | INFO     | ..............................
[2025-12-16 16:17:17] 2025-12-16 15:15:23,442 | INFO     | time since job start (9095s) is within the limit (174528.0s)
[2025-12-16 16:17:17] 2025-12-16 15:15:23,480 | INFO     | 
[2025-12-16 16:17:17] 2025-12-16 15:15:23,480 | INFO     | job summary report
[2025-12-16 16:17:17] 2025-12-16 15:15:23,480 | INFO     | --------------------------------------------------
[2025-12-16 16:17:17] 2025-12-16 15:15:23,480 | INFO     | PanDA job id: 6931596111
[2025-12-16 16:17:17] 2025-12-16 15:15:23,481 | INFO     | task id: 47899050
[2025-12-16 16:17:17] 2025-12-16 15:15:23,481 | INFO     | errors: (none)
[2025-12-16 16:17:17] 2025-12-16 15:15:23,481 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 16:17:17] 2025-12-16 15:15:23,481 | INFO     | pilot state: finished 
[2025-12-16 16:17:17] 2025-12-16 15:15:23,481 | INFO     | transexitcode: 0
[2025-12-16 16:17:17] 2025-12-16 15:15:23,481 | INFO     | exeerrorcode: 0
[2025-12-16 16:17:17] 2025-12-16 15:15:23,481 | INFO     | exeerrordiag: 
[2025-12-16 16:17:17] 2025-12-16 15:15:23,481 | INFO     | exitcode: 0
[2025-12-16 16:17:17] 2025-12-16 15:15:23,481 | INFO     | exitmsg: OK
[2025-12-16 16:17:17] 2025-12-16 15:15:23,481 | INFO     | cpuconsumptiontime: 34234 s
[2025-12-16 16:17:17] 2025-12-16 15:15:23,482 | INFO     | nevents: 400
[2025-12-16 16:17:17] 2025-12-16 15:15:23,482 | INFO     | neventsw: 0
[2025-12-16 16:17:17] 2025-12-16 15:15:23,482 | INFO     | pid: 3564562
[2025-12-16 16:17:17] 2025-12-16 15:15:23,482 | INFO     | pgrp: 3564562
[2025-12-16 16:17:17] 2025-12-16 15:15:23,482 | INFO     | corecount: 4
[2025-12-16 16:17:17] 2025-12-16 15:15:23,482 | INFO     | event service: False
[2025-12-16 16:17:17] 2025-12-16 15:15:23,482 | INFO     | sizes: {0: 2283104, 1: 2283972, 8: 2284234, 12: 2284262, 9064: 2312804, 9065: 2312803, 9066: 2322009, 9068: 2322065, 9078: 2322351}
[2025-12-16 16:17:17] 2025-12-16 15:15:23,482 | INFO     | --------------------------------------------------
[2025-12-16 16:17:17] 2025-12-16 15:15:23,483 | INFO     | 
[2025-12-16 16:17:17] 2025-12-16 15:15:23,483 | INFO     | executing command: ls -lF /scratch/boinc/var/slot108/slots/0
[2025-12-16 16:17:17] 2025-12-16 15:15:23,509 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 16:17:17] 2025-12-16 15:15:23,509 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 16:17:17] 2025-12-16 15:15:23,509 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 16:17:17] 2025-12-16 15:15:23,509 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 16:17:17] 2025-12-16 15:15:23,509 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 16:17:17] 2025-12-16 15:15:23,509 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 16:17:17] 2025-12-16 15:15:23,509 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 16:17:17] 2025-12-16 15:15:23,510 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 16:17:17] 2025-12-16 15:15:23,510 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 16:17:17] 2025-12-16 15:15:23,510 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 16:17:17] 2025-12-16 15:15:23,510 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 16:17:17] 2025-12-16 15:15:23,510 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 16:17:17] 2025-12-16 15:15:23,510 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 16:17:17] 2025-12-16 15:15:23,510 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 16:17:17] 2025-12-16 15:15:23,510 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 16:17:17] 2025-12-16 15:15:23,510 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 16:17:17] 2025-12-16 15:15:23,510 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 16:17:17] 2025-12-16 15:15:23,511 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 16:17:17] 2025-12-16 15:15:23,511 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 16:17:17] 2025-12-16 15:15:23,511 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 16:17:17] 2025-12-16 15:15:23,511 | INFO     | job 6931596111 has completed (purged errors)
[2025-12-16 16:17:17] 2025-12-16 15:15:23,511 | INFO     | overall cleanup function is called
[2025-12-16 16:17:17] 2025-12-16 15:15:24,246 | INFO     | number of running child processes to parent process 3564562: 1
[2025-12-16 16:17:17] 2025-12-16 15:15:24,246 | INFO     | maximum number of monitored processes: 6
[2025-12-16 16:17:17] 2025-12-16 15:15:24,246 | INFO     | aborting job monitoring since job object (job id=6931596111) has expired
[2025-12-16 16:17:17] 2025-12-16 15:15:24,523 | INFO     | --- collectZombieJob: --- 10, [3564562]
[2025-12-16 16:17:17] 2025-12-16 15:15:24,523 | INFO     | zombie collector waiting for pid 3564562
[2025-12-16 16:17:17] 2025-12-16 15:15:24,523 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 16:17:17] 2025-12-16 15:15:24,523 | INFO     | collected zombie processes
[2025-12-16 16:17:17] 2025-12-16 15:15:24,523 | INFO     | will attempt to kill all subprocesses of pid=3564562
[2025-12-16 16:17:17] 2025-12-16 15:15:26,790 | INFO     | PID=3556525 has CPU usage=30.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-16 16:17:17] 2025-12-16 15:15:26,791 | INFO     | .. there are 9 such processes running
[2025-12-16 16:17:17] 2025-12-16 15:15:26,820 | INFO     | process IDs to be killed: [3564562] (in reverse order)
[2025-12-16 16:17:17] 2025-12-16 15:15:27,070 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 16:17:17] 2025-12-16 15:15:27,070 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 16:17:17] 2025-12-16 15:15:27,102 | INFO     | did not find any defunct processes belonging to 3564562
[2025-12-16 16:17:17] 2025-12-16 15:15:27,134 | INFO     | did not find any defunct processes belonging to 3564562
[2025-12-16 16:17:17] 2025-12-16 15:15:27,135 | INFO     | ready for new job
[2025-12-16 16:17:17] 2025-12-16 15:15:27,135 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 16:17:17] 2025-12-16 15:15:27,137 | INFO     | ***************************************
[2025-12-16 16:17:17] 2025-12-16 15:15:27,137 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 16:17:17] 2025-12-16 15:15:27,137 | INFO     | ***************************************
[2025-12-16 16:17:17] 2025-12-16 15:15:27,137 | INFO     | 
[2025-12-16 16:17:17] 2025-12-16 15:15:27,146 | INFO     | architecture information:
[2025-12-16 16:17:17] 2025-12-16 15:15:27,146 | INFO     | executing command: cat /etc/os-release
[2025-12-16 16:17:17] 2025-12-16 15:15:27,169 | INFO     | cat /etc/os-release:
[2025-12-16 16:17:17] NAME="CentOS Linux"
[2025-12-16 16:17:17] VERSION="7 (Core)"
[2025-12-16 16:17:17] ID="centos"
[2025-12-16 16:17:17] ID_LIKE="rhel fedora"
[2025-12-16 16:17:17] VERSION_ID="7"
[2025-12-16 16:17:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 16:17:17] ANSI_COLOR="0;31"
[2025-12-16 16:17:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 16:17:17] HOME_URL="https://www.centos.org/"
[2025-12-16 16:17:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 16:17:17] 
[2025-12-16 16:17:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 16:17:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 16:17:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 16:17:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 16:17:17] 
[2025-12-16 16:17:17] 2025-12-16 15:15:27,170 | INFO     | ***************************************
[2025-12-16 16:17:17] 2025-12-16 15:15:27,673 | INFO     | executing command: df -mP /scratch/boinc/var/slot108/slots/0
[2025-12-16 16:17:17] 2025-12-16 15:15:27,703 | INFO     | sufficient remaining disk space (3332929224704 B)
[2025-12-16 16:17:17] 2025-12-16 15:15:27,704 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 16:17:17] 2025-12-16 15:15:27,704 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 16:17:17] 2025-12-16 15:15:27,704 | INFO     | update_server=False
[2025-12-16 16:17:17] 2025-12-16 15:15:27,704 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 16:17:17] 2025-12-16 15:15:27,704 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-16 16:17:17] 2025-12-16 15:15:27,705 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 16:17:17] 2025-12-16 15:15:27,705 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 16:17:17] 2025-12-16 15:15:27,706 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 16:17:17] 2025-12-16 15:15:27,706 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 16:17:17] 2025-12-16 15:15:27,755 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 16:17:17] 2025-12-16 15:15:27,755 | INFO     | aborting loop
[2025-12-16 16:17:17] 2025-12-16 15:15:28,078 | INFO     | all data control threads have been joined
[2025-12-16 16:17:17] 2025-12-16 15:15:28,413 | INFO     | all job control threads have been joined
[2025-12-16 16:17:17] 2025-12-16 15:15:28,489 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 16:17:17] 2025-12-16 15:15:28,709 | INFO     | [job] retrieve thread has finished
[2025-12-16 16:17:17] 2025-12-16 15:15:28,741 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 16:17:17] 2025-12-16 15:15:28,761 | INFO     | [job] job monitor thread has finished
[2025-12-16 16:17:17] 2025-12-16 15:15:28,797 | INFO     | all payload control threads have been joined
[2025-12-16 16:17:17] 2025-12-16 15:15:29,051 | INFO     | [payload] validate_post thread has finished
[2025-12-16 16:17:17] 2025-12-16 15:15:29,083 | INFO     | [data] control thread has finished
[2025-12-16 16:17:17] 2025-12-16 15:15:29,252 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 16:17:17] 2025-12-16 15:15:29,418 | INFO     | [job] control thread has finished
[2025-12-16 16:17:17] 2025-12-16 15:15:29,494 | INFO     | [job] queue monitor thread has finished
[2025-12-16 16:17:17] 2025-12-16 15:15:29,712 | INFO     | [data] copytool_out thread has finished
[2025-12-16 16:17:17] 2025-12-16 15:15:29,743 | INFO     | [job] validate thread has finished
[2025-12-16 16:17:17] 2025-12-16 15:15:29,744 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 16:17:17] 2025-12-16 15:15:29,745 | INFO     | [data] copytool_in thread has finished
[2025-12-16 16:17:17] 2025-12-16 15:15:29,748 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 16:17:17] 2025-12-16 15:15:29,802 | INFO     | [payload] control thread has finished
[2025-12-16 16:17:17] 2025-12-16 15:15:29,991 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 16:17:17] 2025-12-16 15:15:30,295 | INFO     | [payload] failed_post thread has finished
[2025-12-16 16:17:17] 2025-12-16 15:15:32,747 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 16:17:17] 2025-12-16 15:16:02,747 | INFO     | [monitor] cgroup control has ended
[2025-12-16 16:17:17] 2025-12-16 15:16:04,454 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23454088189760)>', '<ExcThread(monitor, started 23453845378816)>']
[2025-12-16 16:17:17] 2025-12-16 15:16:04,881 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 16:17:17] 2025-12-16 15:16:04,881 | INFO     | [monitor] control thread has ended
[2025-12-16 16:17:17] 2025-12-16 15:16:09,479 | INFO     | all workflow threads have been joined
[2025-12-16 16:17:17] 2025-12-16 15:16:09,479 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 16:17:17] 2025-12-16 15:16:09,479 | INFO     | traces error code: 0
[2025-12-16 16:17:17] 2025-12-16 15:16:09,480 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 16:17:17] 2025-12-16 15:16:09,623 [wrapper] ==== pilot stdout END ====
[2025-12-16 16:17:17] 2025-12-16 15:16:09,628 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 16:17:17] 2025-12-16 15:16:09,632 [wrapper] pilotpid: 3556525
[2025-12-16 16:17:17] 2025-12-16 15:16:09,636 [wrapper] Pilot exit status: 0
[2025-12-16 16:17:17] 2025-12-16 15:16:09,651 [wrapper] pandaids: 6931596111
[2025-12-16 16:17:17] 2025-12-16 15:16:09,819 [wrapper] cleanup supervisor_pilot 3905110 3556526
[2025-12-16 16:17:17] 2025-12-16 15:16:09,823 [wrapper] Test setup, not cleaning
[2025-12-16 16:17:17] 2025-12-16 15:16:09,828 [wrapper] apfmon messages muted
[2025-12-16 16:17:17] 2025-12-16 15:16:09,831 [wrapper] ==== wrapper stdout END ====
[2025-12-16 16:17:17] 2025-12-16 15:16:09,836 [wrapper] ==== wrapper stderr END ====
[2025-12-16 16:17:17]  *** Error codes and diagnostics ***
[2025-12-16 16:17:17]     "exeErrorCode": 0,
[2025-12-16 16:17:17]     "exeErrorDiag": "",
[2025-12-16 16:17:17]     "pilotErrorCode": 0,
[2025-12-16 16:17:17]     "pilotErrorDiag": "",
[2025-12-16 16:17:17]  *** Listing of results directory ***
[2025-12-16 16:17:17] total 369792
[2025-12-16 16:17:17] -rw-r--r-- 1 boinc boinc    579449 Dec 15 11:33 pilot3.tar.gz
[2025-12-16 16:17:17] -rwx------ 1 boinc boinc     36322 Dec 15 11:34 runpilot2-wrapper.sh
[2025-12-16 16:17:17] -rw-r--r-- 1 boinc boinc      5112 Dec 15 11:35 queuedata.json
[2025-12-16 16:17:17] -rw-r--r-- 1 boinc boinc       100 Dec 16 13:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 16:17:17] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 13:43 run_atlas
[2025-12-16 16:17:17] -rw-r--r-- 1 boinc boinc       105 Dec 16 13:43 job.xml
[2025-12-16 16:17:17] -rw-r--r-- 2 boinc boinc 198674901 Dec 16 13:43 EVNT.47899048._000085.pool.root.1
[2025-12-16 16:17:17] -rw-r--r-- 1 boinc boinc      6692 Dec 16 13:43 init_data.xml
[2025-12-16 16:17:17] -rw-r--r-- 2 boinc boinc     15847 Dec 16 13:43 start_atlas.sh
[2025-12-16 16:17:17] drwxrwx--x 2 boinc boinc      4096 Dec 16 13:43 shared
[2025-12-16 16:17:17] -rw-r--r-- 2 boinc boinc    592387 Dec 16 13:43 input.tar.gz
[2025-12-16 16:17:17] -rw-r--r-- 1 boinc boinc         0 Dec 16 13:43 boinc_lockfile
[2025-12-16 16:17:17] -rw-r--r-- 1 boinc boinc      2489 Dec 16 13:43 pandaJob.out
[2025-12-16 16:17:17] -rw------- 1 boinc boinc    990993 Dec 16 13:43 agis_schedconf.cvmfs.json
[2025-12-16 16:17:17] -rw------- 1 boinc boinc   1516240 Dec 16 13:43 agis_ddmendpoints.agis.ALL.json
[2025-12-16 16:17:17] drwx------ 5 boinc boinc      4096 Dec 16 13:43 pilot3
[2025-12-16 16:17:17] -rw------- 1 boinc boinc 172844580 Dec 16 16:14 HITS.47899050._002119.pool.root.1
[2025-12-16 16:17:17] -rw-r--r-- 1 boinc boinc       528 Dec 16 16:14 boinc_task_state.xml
[2025-12-16 16:17:17] -rw------- 1 boinc boinc      1026 Dec 16 16:15 memory_monitor_summary.json
[2025-12-16 16:17:17] -rw------- 1 boinc boinc        95 Dec 16 16:15 pilot_heartbeat.json
[2025-12-16 16:17:17] -rw------- 1 boinc boinc    335046 Dec 16 16:15 log.47899050._002119.job.log.tgz.1
[2025-12-16 16:17:17] -rw------- 1 boinc boinc      7775 Dec 16 16:15 heartbeat.json
[2025-12-16 16:17:17] -rw------- 1 boinc boinc      4564 Dec 16 16:16 pilotlog.txt
[2025-12-16 16:17:17] -rw------- 1 boinc boinc   1279263 Dec 16 16:16 log.47899050._002119.job.log.1
[2025-12-16 16:17:17] -rw------- 1 boinc boinc       357 Dec 16 16:16 output.list
[2025-12-16 16:17:17] -rw-r--r-- 1 boinc boinc       620 Dec 16 16:16 runtime_log
[2025-12-16 16:17:17] -rw------- 1 boinc boinc   1638400 Dec 16 16:16 result.tar.gz
[2025-12-16 16:17:17] -rw-r--r-- 1 boinc boinc      9222 Dec 16 16:16 runtime_log.err
[2025-12-16 16:17:17] -rw------- 1 boinc boinc       663 Dec 16 16:16 cnzMDmL5Kp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7mXKDmQo8kNm.diag
[2025-12-16 16:17:17] -rw-r--r-- 1 boinc boinc        26 Dec 16 16:16 wrapper_checkpoint.txt
[2025-12-16 16:17:17] -rw-r--r-- 1 boinc boinc      8192 Dec 16 16:17 boinc_mmap_file
[2025-12-16 16:17:17] -rw-r--r-- 1 boinc boinc     20870 Dec 16 16:17 stderr.txt
[2025-12-16 16:17:17] HITS file was successfully produced:
[2025-12-16 16:17:17] -rw------- 1 boinc boinc 172844580 Dec 16 16:14 shared/HITS.pool.root.1
[2025-12-16 16:17:17]  *** Contents of shared directory: ***
[2025-12-16 16:17:17] total 365020
[2025-12-16 16:17:17] -rw-r--r-- 2 boinc boinc 198674901 Dec 16 13:43 ATLAS.root_0
[2025-12-16 16:17:17] -rw-r--r-- 2 boinc boinc     15847 Dec 16 13:43 start_atlas.sh
[2025-12-16 16:17:17] -rw-r--r-- 2 boinc boinc    592387 Dec 16 13:43 input.tar.gz
[2025-12-16 16:17:17] -rw------- 1 boinc boinc 172844580 Dec 16 16:14 HITS.pool.root.1
[2025-12-16 16:17:17] -rw------- 1 boinc boinc   1638400 Dec 16 16:16 result.tar.gz
16:17:18 (3552485): run_atlas exited; CPU time 34841.578990
16:17:18 (3552485): called boinc_finish(0)

</stderr_txt>
]]>

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