Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:23:45 (2572663): wrapper (7.7.26015): starting
10:23:45 (2572663): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 10:23:45] Arguments: --nthreads 4
[2025-12-16 10:23:45] Threads: 4
[2025-12-16 10:23:45] Checking for CVMFS
[2025-12-16 10:23:45] No cvmfs_config command found, will try listing directly
[2025-12-16 10:23:45] CVMFS is ok
[2025-12-16 10:23:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 10:23:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 10:23:45] Further information can be found at the LHC@home message board.
[2025-12-16 10:23:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 10:23:45] Checking for apptainer binary...
[2025-12-16 10:23:45] which: no apptainer in ((null))
[2025-12-16 10:23:45] apptainer is not installed, using version from CVMFS
[2025-12-16 10:23:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 10:23:46] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot108/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2025-12-16 10:23:46] apptainer works
[2025-12-16 10:23:46] Set ATHENA_PROC_NUMBER=4
[2025-12-16 10:23:46] Set ATHENA_CORE_NUMBER=4
[2025-12-16 10:23:46] Starting ATLAS job with PandaID=6929720672
[2025-12-16 10:23:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot108/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 14:08:46]  *** The last 200 lines of the pilot log: ***
[2025-12-16 14:08:46] 2025-12-16 13:07:41,076 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2717.6509218749984
[2025-12-16 14:08:46] 2025-12-16 13:07:41,099 | INFO     | using path: /scratch/boinc/var/slot108/slots/0/PanDA_Pilot-6929720672/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 14:08:46] 2025-12-16 13:07:41,099 | INFO     | extracted standard info from prmon json
[2025-12-16 14:08:46] 2025-12-16 13:07:41,100 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 14:08:46] 2025-12-16 13:07:41,100 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 14:08:46] 2025-12-16 13:07:41,100 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 14:08:46] 2025-12-16 13:07:41,100 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 14:08:46] 2025-12-16 13:07:41,104 | INFO     | fitting pss+swap vs Time
[2025-12-16 14:08:46] 2025-12-16 13:07:41,104 | INFO     | sum of square deviations: 3301699115.0
[2025-12-16 14:08:46] 2025-12-16 13:07:41,105 | INFO     | sum of deviations: -24829864529.499992
[2025-12-16 14:08:46] 2025-12-16 13:07:41,105 | INFO     | mean x: 1765883754.5
[2025-12-16 14:08:46] 2025-12-16 13:07:41,106 | INFO     | mean y: 2343624.4136363636
[2025-12-16 14:08:46] 2025-12-16 13:07:41,106 | INFO     | intersect: 13282370929.106367
[2025-12-16 14:08:46] 2025-12-16 13:07:41,106 | INFO     | chi2: 2.109251855225407
[2025-12-16 14:08:46] 2025-12-16 13:07:41,106 | INFO     | sum of square deviations: 3081657780.0
[2025-12-16 14:08:46] 2025-12-16 13:07:41,108 | INFO     | sum of deviations: -10989267608.000002
[2025-12-16 14:08:46] 2025-12-16 13:07:41,108 | INFO     | mean x: 1765883602.0
[2025-12-16 14:08:46] 2025-12-16 13:07:41,108 | INFO     | mean y: 2353047.060465116
[2025-12-16 14:08:46] 2025-12-16 13:07:41,108 | INFO     | intersect: 6299537501.772035
[2025-12-16 14:08:46] 2025-12-16 13:07:41,108 | INFO     | chi2: 1.373632067422063
[2025-12-16 14:08:46] 2025-12-16 13:07:41,108 | INFO     | current chi2=1.373632067422063 (change=34.87586302133328 %)
[2025-12-16 14:08:46] 2025-12-16 13:07:41,109 | INFO     | sum of square deviations: 2871616632.5
[2025-12-16 14:08:46] 2025-12-16 13:07:41,110 | INFO     | sum of deviations: -10672767887.999985
[2025-12-16 14:08:46] 2025-12-16 13:07:41,110 | INFO     | mean x: 1765883449.5
[2025-12-16 14:08:46] 2025-12-16 13:07:41,110 | INFO     | mean y: 2353276.8952380954
[2025-12-16 14:08:46] 2025-12-16 13:07:41,110 | INFO     | intersect: 6565507968.392604
[2025-12-16 14:08:46] 2025-12-16 13:07:41,110 | INFO     | chi2: 1.3727422126395226
[2025-12-16 14:08:46] 2025-12-16 13:07:41,110 | INFO     | current chi2=1.3727422126395226 (change=0.06478115964564383 %)
[2025-12-16 14:08:46] 2025-12-16 13:07:41,111 | INFO     | right removable region: 209
[2025-12-16 14:08:46] 2025-12-16 13:07:41,111 | INFO     | sum of square deviations: 3081657780.0
[2025-12-16 14:08:46] 2025-12-16 13:07:41,112 | INFO     | sum of deviations: -50123876778.0
[2025-12-16 14:08:46] 2025-12-16 13:07:41,112 | INFO     | mean x: 1765883907.0
[2025-12-16 14:08:46] 2025-12-16 13:07:41,112 | INFO     | mean y: 2360918.381395349
[2025-12-16 14:08:46] 2025-12-16 13:07:41,112 | INFO     | intersect: 28724871228.634346
[2025-12-16 14:08:46] 2025-12-16 13:07:41,113 | INFO     | chi2: 0.8543777412813256
[2025-12-16 14:08:46] 2025-12-16 13:07:41,113 | INFO     | current chi2=0.8543777412813256 (change=59.49380159772234 %)
[2025-12-16 14:08:46] 2025-12-16 13:07:41,113 | INFO     | sum of square deviations: 2871616632.5
[2025-12-16 14:08:46] 2025-12-16 13:07:41,114 | INFO     | sum of deviations: -46146049149.0
[2025-12-16 14:08:46] 2025-12-16 13:07:41,114 | INFO     | mean x: 1765884059.5
[2025-12-16 14:08:46] 2025-12-16 13:07:41,114 | INFO     | mean y: 2358027.0476190476
[2025-12-16 14:08:46] 2025-12-16 13:07:41,115 | INFO     | intersect: 28379604376.32075
[2025-12-16 14:08:46] 2025-12-16 13:07:41,115 | INFO     | chi2: 0.8534758567649169
[2025-12-16 14:08:46] 2025-12-16 13:07:41,115 | INFO     | current chi2=0.8534758567649169 (change=0.10556039475655588 %)
[2025-12-16 14:08:46] 2025-12-16 13:07:41,115 | INFO     | left removable region: 20
[2025-12-16 14:08:46] 2025-12-16 13:07:41,115 | INFO     | sum of square deviations: 2093397390.0
[2025-12-16 14:08:46] 2025-12-16 13:07:41,117 | INFO     | sum of deviations: -22703720967.000008
[2025-12-16 14:08:46] 2025-12-16 13:07:41,117 | INFO     | mean x: 1765884029.0
[2025-12-16 14:08:46] 2025-12-16 13:07:41,117 | INFO     | mean y: 2361303.7513227514
[2025-12-16 14:08:46] 2025-12-16 13:07:41,117 | INFO     | intersect: 19154070599.852886
[2025-12-16 14:08:46] 2025-12-16 13:07:41,117 | INFO     | chi2: 0.08547854889917772
[2025-12-16 14:08:46] 2025-12-16 13:07:41,117 | INFO     | current memory leak: -10.85 B/s (using 189 data points, chi2=0.09)
[2025-12-16 14:08:46] 2025-12-16 13:07:41,118 | INFO     | could have reported an average CPU frequency of 2704 MHz (11 samples)
[2025-12-16 14:08:46] 2025-12-16 13:07:41,118 | INFO     | ..............................
[2025-12-16 14:08:46] 2025-12-16 13:07:41,118 | INFO     | . Timing measurements:
[2025-12-16 14:08:46] 2025-12-16 13:07:41,118 | INFO     | . get job = 0 s
[2025-12-16 14:08:46] 2025-12-16 13:07:41,118 | INFO     | . initial setup = 1 s
[2025-12-16 14:08:46] 2025-12-16 13:07:41,118 | INFO     | . payload setup = 9 s
[2025-12-16 14:08:46] 2025-12-16 13:07:41,119 | INFO     | . stage-in = 0 s
[2025-12-16 14:08:46] 2025-12-16 13:07:41,119 | INFO     | . payload execution = 13378 s
[2025-12-16 14:08:46] 2025-12-16 13:07:41,119 | INFO     | . stage-out = 1 s
[2025-12-16 14:08:46] 2025-12-16 13:07:41,119 | INFO     | . log creation = 0 s
[2025-12-16 14:08:46] 2025-12-16 13:07:41,119 | INFO     | ..............................
[2025-12-16 14:08:46] 2025-12-16 13:07:41,219 | INFO     | 
[2025-12-16 14:08:46] 2025-12-16 13:07:41,220 | INFO     | job summary report
[2025-12-16 14:08:46] 2025-12-16 13:07:41,220 | INFO     | --------------------------------------------------
[2025-12-16 14:08:46] 2025-12-16 13:07:41,220 | INFO     | PanDA job id: 6929720672
[2025-12-16 14:08:46] 2025-12-16 13:07:41,220 | INFO     | task id: 47898763
[2025-12-16 14:08:46] 2025-12-16 13:07:41,220 | INFO     | errors: (none)
[2025-12-16 14:08:46] 2025-12-16 13:07:41,220 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 14:08:46] 2025-12-16 13:07:41,220 | INFO     | pilot state: finished 
[2025-12-16 14:08:46] 2025-12-16 13:07:41,220 | INFO     | transexitcode: 0
[2025-12-16 14:08:46] 2025-12-16 13:07:41,220 | INFO     | exeerrorcode: 0
[2025-12-16 14:08:46] 2025-12-16 13:07:41,220 | INFO     | exeerrordiag: 
[2025-12-16 14:08:46] 2025-12-16 13:07:41,220 | INFO     | exitcode: 0
[2025-12-16 14:08:46] 2025-12-16 13:07:41,221 | INFO     | exitmsg: OK
[2025-12-16 14:08:46] 2025-12-16 13:07:41,221 | INFO     | cpuconsumptiontime: 51578 s
[2025-12-16 14:08:46] 2025-12-16 13:07:41,221 | INFO     | nevents: 400
[2025-12-16 14:08:46] 2025-12-16 13:07:41,221 | INFO     | neventsw: 0
[2025-12-16 14:08:46] 2025-12-16 13:07:41,221 | INFO     | pid: 2594738
[2025-12-16 14:08:46] 2025-12-16 13:07:41,221 | INFO     | pgrp: 2594738
[2025-12-16 14:08:46] 2025-12-16 13:07:41,221 | INFO     | corecount: 4
[2025-12-16 14:08:46] 2025-12-16 13:07:41,221 | INFO     | event service: False
[2025-12-16 14:08:46] 2025-12-16 13:07:41,222 | INFO     | sizes: {0: 2283799, 1: 2283998, 7: 2284260, 11: 2284288, 13391: 2315174, 13392: 2324196, 13396: 2324380, 13402: 2324574}
[2025-12-16 14:08:46] 2025-12-16 13:07:41,222 | INFO     | --------------------------------------------------
[2025-12-16 14:08:46] 2025-12-16 13:07:41,222 | INFO     | 
[2025-12-16 14:08:46] 2025-12-16 13:07:41,222 | INFO     | executing command: ls -lF /scratch/boinc/var/slot108/slots/0
[2025-12-16 14:08:46] 2025-12-16 13:07:41,252 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 14:08:46] 2025-12-16 13:07:41,253 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 14:08:46] 2025-12-16 13:07:41,253 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 14:08:46] 2025-12-16 13:07:41,253 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 14:08:46] 2025-12-16 13:07:41,253 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 14:08:46] 2025-12-16 13:07:41,253 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 14:08:46] 2025-12-16 13:07:41,253 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 14:08:46] 2025-12-16 13:07:41,253 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 14:08:46] 2025-12-16 13:07:41,253 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 14:08:46] 2025-12-16 13:07:41,254 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 14:08:46] 2025-12-16 13:07:41,254 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 14:08:46] 2025-12-16 13:07:41,254 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 14:08:46] 2025-12-16 13:07:41,254 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 14:08:46] 2025-12-16 13:07:41,254 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 14:08:46] 2025-12-16 13:07:41,254 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 14:08:46] 2025-12-16 13:07:41,254 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 14:08:46] 2025-12-16 13:07:41,254 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 14:08:46] 2025-12-16 13:07:41,254 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 14:08:46] 2025-12-16 13:07:41,254 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 14:08:46] 2025-12-16 13:07:41,255 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 14:08:46] 2025-12-16 13:07:41,255 | INFO     | job 6929720672 has completed (purged errors)
[2025-12-16 14:08:46] 2025-12-16 13:07:41,255 | INFO     | overall cleanup function is called
[2025-12-16 14:08:46] 2025-12-16 13:07:42,265 | INFO     | --- collectZombieJob: --- 10, [2594738]
[2025-12-16 14:08:46] 2025-12-16 13:07:42,265 | INFO     | zombie collector waiting for pid 2594738
[2025-12-16 14:08:46] 2025-12-16 13:07:42,265 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 14:08:46] 2025-12-16 13:07:42,265 | INFO     | collected zombie processes
[2025-12-16 14:08:46] 2025-12-16 13:07:42,265 | INFO     | will attempt to kill all subprocesses of pid=2594738
[2025-12-16 14:08:46] 2025-12-16 13:07:42,342 | INFO     | PID=2579076 has CPU usage=18.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-16 14:08:46] 2025-12-16 13:07:42,342 | INFO     | .. there are 8 such processes running
[2025-12-16 14:08:46] 2025-12-16 13:07:43,129 | INFO     | process IDs to be killed: [2594738] (in reverse order)
[2025-12-16 14:08:46] 2025-12-16 13:07:43,391 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 14:08:46] 2025-12-16 13:07:43,392 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 14:08:46] 2025-12-16 13:07:43,428 | INFO     | did not find any defunct processes belonging to 2594738
[2025-12-16 14:08:46] 2025-12-16 13:07:43,460 | INFO     | did not find any defunct processes belonging to 2594738
[2025-12-16 14:08:46] 2025-12-16 13:07:43,461 | INFO     | ready for new job
[2025-12-16 14:08:46] 2025-12-16 13:07:43,461 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 14:08:46] 2025-12-16 13:07:43,464 | INFO     | ***************************************
[2025-12-16 14:08:46] 2025-12-16 13:07:43,464 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 14:08:46] 2025-12-16 13:07:43,464 | INFO     | ***************************************
[2025-12-16 14:08:46] 2025-12-16 13:07:43,464 | INFO     | 
[2025-12-16 14:08:46] 2025-12-16 13:07:43,472 | INFO     | architecture information:
[2025-12-16 14:08:46] 2025-12-16 13:07:43,473 | INFO     | executing command: cat /etc/os-release
[2025-12-16 14:08:46] 2025-12-16 13:07:43,497 | INFO     | cat /etc/os-release:
[2025-12-16 14:08:46] NAME="CentOS Linux"
[2025-12-16 14:08:46] VERSION="7 (Core)"
[2025-12-16 14:08:46] ID="centos"
[2025-12-16 14:08:46] ID_LIKE="rhel fedora"
[2025-12-16 14:08:46] VERSION_ID="7"
[2025-12-16 14:08:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 14:08:46] ANSI_COLOR="0;31"
[2025-12-16 14:08:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 14:08:46] HOME_URL="https://www.centos.org/"
[2025-12-16 14:08:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 14:08:46] 
[2025-12-16 14:08:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 14:08:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 14:08:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 14:08:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 14:08:46] 
[2025-12-16 14:08:46] 2025-12-16 13:07:43,498 | INFO     | ***************************************
[2025-12-16 14:08:46] 2025-12-16 13:07:44,001 | INFO     | executing command: df -mP /scratch/boinc/var/slot108/slots/0
[2025-12-16 14:08:46] 2025-12-16 13:07:44,027 | INFO     | sufficient remaining disk space (3331593338880 B)
[2025-12-16 14:08:46] 2025-12-16 13:07:44,028 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 14:08:46] 2025-12-16 13:07:44,028 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 14:08:46] 2025-12-16 13:07:44,028 | INFO     | update_server=False
[2025-12-16 14:08:46] 2025-12-16 13:07:44,028 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 14:08:46] 2025-12-16 13:07:44,029 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 14:08:46] 2025-12-16 13:07:44,029 | INFO     | aborting loop
[2025-12-16 14:08:46] 2025-12-16 13:07:44,075 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 14:08:46] 2025-12-16 13:07:44,486 | INFO     | all payload control threads have been joined
[2025-12-16 14:08:46] 2025-12-16 13:07:44,812 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 14:08:46] 2025-12-16 13:07:44,813 | INFO     | all data control threads have been joined
[2025-12-16 14:08:46] 2025-12-16 13:07:45,034 | INFO     | [job] retrieve thread has finished
[2025-12-16 14:08:46] 2025-12-16 13:07:45,035 | INFO     | [job] job monitor thread has finished
[2025-12-16 14:08:46] 2025-12-16 13:07:45,079 | INFO     | [data] copytool_in thread has finished
[2025-12-16 14:08:46] 2025-12-16 13:07:45,220 | INFO     | all job control threads have been joined
[2025-12-16 14:08:46] 2025-12-16 13:07:45,241 | INFO     | [job] validate thread has finished
[2025-12-16 14:08:46] 2025-12-16 13:07:45,252 | INFO     | [payload] validate_post thread has finished
[2025-12-16 14:08:46] 2025-12-16 13:07:45,383 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 14:08:46] 2025-12-16 13:07:45,423 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 14:08:46] 2025-12-16 13:07:45,487 | INFO     | [payload] control thread has finished
[2025-12-16 14:08:46] 2025-12-16 13:07:45,621 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 14:08:46] 2025-12-16 13:07:45,819 | INFO     | [data] control thread has finished
[2025-12-16 14:08:46] 2025-12-16 13:07:46,081 | INFO     | [data] copytool_out thread has finished
[2025-12-16 14:08:46] 2025-12-16 13:07:46,226 | INFO     | [job] control thread has finished
[2025-12-16 14:08:46] 2025-12-16 13:07:46,231 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 14:08:46] 2025-12-16 13:07:46,273 | INFO     | [payload] failed_post thread has finished
[2025-12-16 14:08:46] 2025-12-16 13:07:47,233 | INFO     | [job] queue monitor thread has finished
[2025-12-16 14:08:46] 2025-12-16 13:07:48,819 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 14:08:46] 2025-12-16 13:07:54,498 | INFO     | job.realtimelogging is not enabled
[2025-12-16 14:08:46] 2025-12-16 13:07:55,503 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 14:08:46] 2025-12-16 13:08:15,435 | INFO     | PID=2579076 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 14:08:46] 2025-12-16 13:08:15,435 | INFO     | .. there are 8 such processes running
[2025-12-16 14:08:46] 2025-12-16 13:08:15,436 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 14:08:46] 2025-12-16 13:08:15,437 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 14:08:46] 2025-12-16 13:08:15,437 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 14:08:46] 2025-12-16 13:08:21,821 | INFO     | [monitor] cgroup control has ended
[2025-12-16 14:08:46] 2025-12-16 13:08:21,827 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23455097464640)>', '<ExcThread(monitor, started 23454856210176)>']
[2025-12-16 14:08:46] 2025-12-16 13:08:22,471 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 14:08:46] 2025-12-16 13:08:22,472 | INFO     | [monitor] control thread has ended
[2025-12-16 14:08:46] 2025-12-16 13:08:26,852 | INFO     | all workflow threads have been joined
[2025-12-16 14:08:46] 2025-12-16 13:08:26,852 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 14:08:46] 2025-12-16 13:08:26,853 | INFO     | traces error code: 0
[2025-12-16 14:08:46] 2025-12-16 13:08:26,853 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 14:08:46] 2025-12-16 13:08:27,107 [wrapper] ==== pilot stdout END ====
[2025-12-16 14:08:46] 2025-12-16 13:08:27,111 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 14:08:46] 2025-12-16 13:08:27,115 [wrapper] pilotpid: 2579076
[2025-12-16 14:08:46] 2025-12-16 13:08:27,119 [wrapper] Pilot exit status: 0
[2025-12-16 14:08:46] 2025-12-16 13:08:27,134 [wrapper] pandaids: 6929720672
[2025-12-16 14:08:46] 2025-12-16 13:08:27,323 [wrapper] cleanup supervisor_pilot 3009366 2579078
[2025-12-16 14:08:46] 2025-12-16 13:08:27,327 [wrapper] Test setup, not cleaning
[2025-12-16 14:08:46] 2025-12-16 13:08:27,332 [wrapper] apfmon messages muted
[2025-12-16 14:08:46] 2025-12-16 13:08:27,336 [wrapper] ==== wrapper stdout END ====
[2025-12-16 14:08:46] 2025-12-16 13:08:27,340 [wrapper] ==== wrapper stderr END ====
[2025-12-16 14:08:46]  *** Error codes and diagnostics ***
[2025-12-16 14:08:46]     "exeErrorCode": 0,
[2025-12-16 14:08:46]     "exeErrorDiag": "",
[2025-12-16 14:08:46]     "pilotErrorCode": 0,
[2025-12-16 14:08:46]     "pilotErrorDiag": "",
[2025-12-16 14:08:46]  *** Listing of results directory ***
[2025-12-16 14:08:46] total 446028
[2025-12-16 14:08:46] -rw-r--r-- 1 boinc boinc    579449 Dec 15 11:33 pilot3.tar.gz
[2025-12-16 14:08:46] -rwx------ 1 boinc boinc     36322 Dec 15 11:34 runpilot2-wrapper.sh
[2025-12-16 14:08:46] -rw-r--r-- 1 boinc boinc      5112 Dec 15 11:35 queuedata.json
[2025-12-16 14:08:46] -rw-r--r-- 1 boinc boinc       100 Dec 16 10:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 14:08:46] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 10:23 run_atlas
[2025-12-16 14:08:46] -rw-r--r-- 1 boinc boinc       105 Dec 16 10:23 job.xml
[2025-12-16 14:08:46] -rw-r--r-- 2 boinc boinc 225480578 Dec 16 10:23 EVNT.47898761._000636.pool.root.1
[2025-12-16 14:08:46] -rw-r--r-- 1 boinc boinc      6691 Dec 16 10:23 init_data.xml
[2025-12-16 14:08:46] -rw-r--r-- 2 boinc boinc     15847 Dec 16 10:23 start_atlas.sh
[2025-12-16 14:08:46] drwxrwx--x 2 boinc boinc      4096 Dec 16 10:23 shared
[2025-12-16 14:08:46] -rw-r--r-- 2 boinc boinc    592400 Dec 16 10:23 input.tar.gz
[2025-12-16 14:08:46] -rw-r--r-- 1 boinc boinc         0 Dec 16 10:23 boinc_lockfile
[2025-12-16 14:08:46] -rw-r--r-- 1 boinc boinc      2508 Dec 16 10:23 pandaJob.out
[2025-12-16 14:08:46] -rw------- 1 boinc boinc    994525 Dec 16 10:23 agis_schedconf.cvmfs.json
[2025-12-16 14:08:46] drwx------ 5 boinc boinc      4096 Dec 16 10:24 pilot3
[2025-12-16 14:08:46] -rw------- 1 boinc boinc 222830380 Dec 16 14:06 HITS.47898763._015916.pool.root.1
[2025-12-16 14:08:46] -rw-r--r-- 1 boinc boinc       529 Dec 16 14:07 boinc_task_state.xml
[2025-12-16 14:08:46] -rw------- 1 boinc boinc      1028 Dec 16 14:07 memory_monitor_summary.json
[2025-12-16 14:08:46] -rw------- 1 boinc boinc   1516240 Dec 16 14:07 agis_ddmendpoints.agis.ALL.json
[2025-12-16 14:08:46] -rw------- 1 boinc boinc    390250 Dec 16 14:07 log.47898763._015916.job.log.tgz.1
[2025-12-16 14:08:46] -rw------- 1 boinc boinc      7787 Dec 16 14:07 heartbeat.json
[2025-12-16 14:08:46] -rw------- 1 boinc boinc        95 Dec 16 14:08 pilot_heartbeat.json
[2025-12-16 14:08:46] -rw-r--r-- 1 boinc boinc        26 Dec 16 14:08 wrapper_checkpoint.txt
[2025-12-16 14:08:46] -rw------- 1 boinc boinc      4907 Dec 16 14:08 pilotlog.txt
[2025-12-16 14:08:46] -rw------- 1 boinc boinc   1862883 Dec 16 14:08 log.47898763._015916.job.log.1
[2025-12-16 14:08:46] -rw------- 1 boinc boinc       357 Dec 16 14:08 output.list
[2025-12-16 14:08:46] -rw-r--r-- 1 boinc boinc       620 Dec 16 14:08 runtime_log
[2025-12-16 14:08:46] -rw------- 1 boinc boinc   2273280 Dec 16 14:08 result.tar.gz
[2025-12-16 14:08:46] -rw-r--r-- 1 boinc boinc      9223 Dec 16 14:08 runtime_log.err
[2025-12-16 14:08:46] -rw------- 1 boinc boinc       666 Dec 16 14:08 0NSNDme5Kp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8oXKDm6fTjLo.diag
[2025-12-16 14:08:46] -rw-r--r-- 1 boinc boinc      8192 Dec 16 14:08 boinc_mmap_file
[2025-12-16 14:08:46] -rw-r--r-- 1 boinc boinc     20981 Dec 16 14:08 stderr.txt
[2025-12-16 14:08:46] HITS file was successfully produced:
[2025-12-16 14:08:46] -rw------- 1 boinc boinc 222830380 Dec 16 14:06 shared/HITS.pool.root.1
[2025-12-16 14:08:46]  *** Contents of shared directory: ***
[2025-12-16 14:08:46] total 440628
[2025-12-16 14:08:46] -rw-r--r-- 2 boinc boinc 225480578 Dec 16 10:23 ATLAS.root_0
[2025-12-16 14:08:46] -rw-r--r-- 2 boinc boinc     15847 Dec 16 10:23 start_atlas.sh
[2025-12-16 14:08:46] -rw-r--r-- 2 boinc boinc    592400 Dec 16 10:23 input.tar.gz
[2025-12-16 14:08:46] -rw------- 1 boinc boinc 222830380 Dec 16 14:06 HITS.pool.root.1
[2025-12-16 14:08:46] -rw------- 1 boinc boinc   2273280 Dec 16 14:08 result.tar.gz
14:08:47 (2572663): run_atlas exited; CPU time 52515.484641
14:08:47 (2572663): called boinc_finish(0)

</stderr_txt>
]]>

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