Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:13:14 (3342564): wrapper (7.7.26015): starting
22:13:14 (3342564): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 22:13:14] Arguments: --nthreads 4
[2025-12-16 22:13:14] Threads: 4
[2025-12-16 22:13:14] Checking for CVMFS
[2025-12-16 22:13:14] No cvmfs_config command found, will try listing directly
[2025-12-16 22:13:14] CVMFS is ok
[2025-12-16 22:13:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 22:13:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 22:13:14] Further information can be found at the LHC@home message board.
[2025-12-16 22:13:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 22:13:14] Checking for apptainer binary...
[2025-12-16 22:13:14] which: no apptainer in ((null))
[2025-12-16 22:13:14] apptainer is not installed, using version from CVMFS
[2025-12-16 22:13:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 22:13:14] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2025-12-16 22:13:14] apptainer works
[2025-12-16 22:13:14] Set ATHENA_PROC_NUMBER=4
[2025-12-16 22:13:14] Set ATHENA_CORE_NUMBER=4
[2025-12-16 22:13:15] Starting ATLAS job with PandaID=6929806026
[2025-12-16 22:13:15] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 03:40:42]  *** The last 200 lines of the pilot log: ***
[2025-12-17 03:40:42] 2025-12-17 02:39:15,422 | INFO     | time since job start (19549s) is within the limit (174528.0s)
[2025-12-17 03:40:42] 2025-12-17 02:39:15,649 | INFO     | monitor loop #1411: job 0:6929806026 is in state 'finished'
[2025-12-17 03:40:42] 2025-12-17 02:39:15,650 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 03:40:42] 2025-12-17 02:39:17,427 | INFO     | time since job start (19551s) is within the limit (174528.0s)
[2025-12-17 03:40:42] 2025-12-17 02:39:18,156 | INFO     | monitor loop #1412: job 0:6929806026 is in state 'finished'
[2025-12-17 03:40:42] 2025-12-17 02:39:18,157 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-17 03:40:42] 2025-12-17 02:39:18,890 | INFO     | PID=3346357 has CPU usage=14.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-17 03:40:42] 2025-12-17 02:39:18,890 | INFO     | .. there are 3 such processes running
[2025-12-17 03:40:42] 2025-12-17 02:39:18,969 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-17 03:40:42] 2025-12-17 02:39:18,976 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2464.736349999999
[2025-12-17 03:40:42] 2025-12-17 02:39:18,984 | INFO     | using path: /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6929806026/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 03:40:42] 2025-12-17 02:39:18,984 | INFO     | extracted standard info from prmon json
[2025-12-17 03:40:42] 2025-12-17 02:39:18,985 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 03:40:42] 2025-12-17 02:39:18,985 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 03:40:42] 2025-12-17 02:39:18,985 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-17 03:40:42] 2025-12-17 02:39:18,985 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-17 03:40:42] 2025-12-17 02:39:18,992 | INFO     | fitting pss+swap vs Time
[2025-12-17 03:40:42] 2025-12-17 02:39:18,993 | INFO     | sum of square deviations: 10160711440.0
[2025-12-17 03:40:42] 2025-12-17 02:39:18,996 | INFO     | sum of deviations: 8013862037.499998
[2025-12-17 03:40:42] 2025-12-17 02:39:18,996 | INFO     | mean x: 1765929363.5
[2025-12-17 03:40:42] 2025-12-17 02:39:18,996 | INFO     | mean y: 2350865.715625
[2025-12-17 03:40:42] 2025-12-17 02:39:18,996 | INFO     | intersect: -1390456554.377705
[2025-12-17 03:40:42] 2025-12-17 02:39:18,997 | INFO     | chi2: 1.3538786121245427
[2025-12-17 03:40:42] 2025-12-17 02:39:18,997 | INFO     | sum of square deviations: 9691828230.0
[2025-12-17 03:40:42] 2025-12-17 02:39:19,000 | INFO     | sum of deviations: 8145390390.000007
[2025-12-17 03:40:42] 2025-12-17 02:39:19,000 | INFO     | mean x: 1765929211.0
[2025-12-17 03:40:42] 2025-12-17 02:39:19,000 | INFO     | mean y: 2350908.473015873
[2025-12-17 03:40:42] 2025-12-17 02:39:19,000 | INFO     | intersect: -1481804865.1688468
[2025-12-17 03:40:42] 2025-12-17 02:39:19,001 | INFO     | chi2: 1.3541446998652789
[2025-12-17 03:40:42] 2025-12-17 02:39:19,001 | INFO     | current chi2=1.3541446998652789 (change=-0.0196537369268695 %)
[2025-12-17 03:40:42] 2025-12-17 02:39:19,001 | INFO     | right removable region: 314
[2025-12-17 03:40:42] 2025-12-17 02:39:19,002 | INFO     | sum of square deviations: 9691828230.0
[2025-12-17 03:40:42] 2025-12-17 02:39:19,005 | INFO     | sum of deviations: -34270138611.000004
[2025-12-17 03:40:42] 2025-12-17 02:39:19,005 | INFO     | mean x: 1765929516.0
[2025-12-17 03:40:42] 2025-12-17 02:39:19,005 | INFO     | mean y: 2364528.6476190477
[2025-12-17 03:40:42] 2025-12-17 02:39:19,005 | INFO     | intersect: 6246661048.807485
[2025-12-17 03:40:42] 2025-12-17 02:39:19,006 | INFO     | chi2: 0.08241093759099542
[2025-12-17 03:40:42] 2025-12-17 02:39:19,006 | INFO     | current chi2=0.08241093759099542 (change=93.91297440900748 %)
[2025-12-17 03:40:42] 2025-12-17 02:39:19,006 | INFO     | sum of square deviations: 9237596457.5
[2025-12-17 03:40:42] 2025-12-17 02:39:19,009 | INFO     | sum of deviations: -37914417111.50001
[2025-12-17 03:40:42] 2025-12-17 02:39:19,009 | INFO     | mean x: 1765929668.5
[2025-12-17 03:40:42] 2025-12-17 02:39:19,009 | INFO     | mean y: 2365747.1774193547
[2025-12-17 03:40:42] 2025-12-17 02:39:19,009 | INFO     | intersect: 7250376022.266007
[2025-12-17 03:40:42] 2025-12-17 02:39:19,010 | INFO     | chi2: 0.06907077932527622
[2025-12-17 03:40:42] 2025-12-17 02:39:19,010 | INFO     | current chi2=0.06907077932527622 (change=16.18736378407228 %)
[2025-12-17 03:40:42] 2025-12-17 02:39:19,010 | INFO     | left removable region: 20
[2025-12-17 03:40:42] 2025-12-17 02:39:19,011 | INFO     | sum of square deviations: 7879803557.5
[2025-12-17 03:40:42] 2025-12-17 02:39:19,013 | INFO     | sum of deviations: -31220643874.0
[2025-12-17 03:40:42] 2025-12-17 02:39:19,013 | INFO     | mean x: 1765929790.5
[2025-12-17 03:40:42] 2025-12-17 02:39:19,014 | INFO     | mean y: 2363994.3401360544
[2025-12-17 03:40:42] 2025-12-17 02:39:19,014 | INFO     | intersect: 6999171045.857541
[2025-12-17 03:40:42] 2025-12-17 02:39:19,014 | INFO     | chi2: 0.06720861707427994
[2025-12-17 03:40:42] 2025-12-17 02:39:19,014 | INFO     | current memory leak: -3.96 B/s (using 294 data points, chi2=0.07)
[2025-12-17 03:40:42] 2025-12-17 02:39:19,015 | INFO     | could have reported an average CPU frequency of 2455 MHz (14 samples)
[2025-12-17 03:40:42] 2025-12-17 02:39:19,015 | INFO     | ..............................
[2025-12-17 03:40:42] 2025-12-17 02:39:19,015 | INFO     | . Timing measurements:
[2025-12-17 03:40:42] 2025-12-17 02:39:19,016 | INFO     | . get job = 0 s
[2025-12-17 03:40:42] 2025-12-17 02:39:19,016 | INFO     | . initial setup = 1 s
[2025-12-17 03:40:42] 2025-12-17 02:39:19,016 | INFO     | . payload setup = 6 s
[2025-12-17 03:40:42] 2025-12-17 02:39:19,016 | INFO     | . stage-in = 0 s
[2025-12-17 03:40:42] 2025-12-17 02:39:19,016 | INFO     | . payload execution = 19517 s
[2025-12-17 03:40:42] 2025-12-17 02:39:19,016 | INFO     | . stage-out = 1 s
[2025-12-17 03:40:42] 2025-12-17 02:39:19,016 | INFO     | . log creation = 0 s
[2025-12-17 03:40:42] 2025-12-17 02:39:19,016 | INFO     | ..............................
[2025-12-17 03:40:42] 2025-12-17 02:39:19,122 | INFO     | 
[2025-12-17 03:40:42] 2025-12-17 02:39:19,122 | INFO     | job summary report
[2025-12-17 03:40:42] 2025-12-17 02:39:19,122 | INFO     | --------------------------------------------------
[2025-12-17 03:40:42] 2025-12-17 02:39:19,122 | INFO     | PanDA job id: 6929806026
[2025-12-17 03:40:42] 2025-12-17 02:39:19,122 | INFO     | task id: 47905907
[2025-12-17 03:40:42] 2025-12-17 02:39:19,123 | INFO     | errors: (none)
[2025-12-17 03:40:42] 2025-12-17 02:39:19,123 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 03:40:42] 2025-12-17 02:39:19,123 | INFO     | pilot state: finished 
[2025-12-17 03:40:42] 2025-12-17 02:39:19,123 | INFO     | transexitcode: 0
[2025-12-17 03:40:42] 2025-12-17 02:39:19,123 | INFO     | exeerrorcode: 0
[2025-12-17 03:40:42] 2025-12-17 02:39:19,123 | INFO     | exeerrordiag: 
[2025-12-17 03:40:42] 2025-12-17 02:39:19,123 | INFO     | exitcode: 0
[2025-12-17 03:40:42] 2025-12-17 02:39:19,124 | INFO     | exitmsg: OK
[2025-12-17 03:40:42] 2025-12-17 02:39:19,124 | INFO     | cpuconsumptiontime: 74832 s
[2025-12-17 03:40:42] 2025-12-17 02:39:19,124 | INFO     | nevents: 400
[2025-12-17 03:40:42] 2025-12-17 02:39:19,124 | INFO     | neventsw: 0
[2025-12-17 03:40:42] 2025-12-17 02:39:19,124 | INFO     | pid: 3353061
[2025-12-17 03:40:42] 2025-12-17 02:39:19,124 | INFO     | pgrp: 3353061
[2025-12-17 03:40:42] 2025-12-17 02:39:19,124 | INFO     | corecount: 4
[2025-12-17 03:40:42] 2025-12-17 02:39:19,125 | INFO     | event service: False
[2025-12-17 03:40:42] 2025-12-17 02:39:19,125 | INFO     | sizes: {0: 2283749, 1: 2283948, 5: 2284210, 12: 2284266, 19525: 2317265, 19527: 2326285, 19530: 2326469, 19537: 2326663}
[2025-12-17 03:40:42] 2025-12-17 02:39:19,125 | INFO     | --------------------------------------------------
[2025-12-17 03:40:42] 2025-12-17 02:39:19,125 | INFO     | 
[2025-12-17 03:40:42] 2025-12-17 02:39:19,125 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/0
[2025-12-17 03:40:42] 2025-12-17 02:39:19,144 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 03:40:42] 2025-12-17 02:39:19,144 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 03:40:42] 2025-12-17 02:39:19,144 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 03:40:42] 2025-12-17 02:39:19,144 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 03:40:42] 2025-12-17 02:39:19,144 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 03:40:42] 2025-12-17 02:39:19,145 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 03:40:42] 2025-12-17 02:39:19,145 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 03:40:42] 2025-12-17 02:39:19,145 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 03:40:42] 2025-12-17 02:39:19,145 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 03:40:42] 2025-12-17 02:39:19,145 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 03:40:42] 2025-12-17 02:39:19,145 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 03:40:42] 2025-12-17 02:39:19,145 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 03:40:42] 2025-12-17 02:39:19,146 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 03:40:42] 2025-12-17 02:39:19,146 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 03:40:42] 2025-12-17 02:39:19,146 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 03:40:42] 2025-12-17 02:39:19,146 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 03:40:42] 2025-12-17 02:39:19,146 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 03:40:42] 2025-12-17 02:39:19,146 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 03:40:42] 2025-12-17 02:39:19,146 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 03:40:42] 2025-12-17 02:39:19,147 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 03:40:42] 2025-12-17 02:39:19,147 | INFO     | job 6929806026 has completed (purged errors)
[2025-12-17 03:40:42] 2025-12-17 02:39:19,147 | INFO     | overall cleanup function is called
[2025-12-17 03:40:42] 2025-12-17 02:39:20,155 | INFO     | --- collectZombieJob: --- 10, [3353061]
[2025-12-17 03:40:42] 2025-12-17 02:39:20,156 | INFO     | zombie collector waiting for pid 3353061
[2025-12-17 03:40:42] 2025-12-17 02:39:20,156 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 03:40:42] 2025-12-17 02:39:20,156 | INFO     | collected zombie processes
[2025-12-17 03:40:42] 2025-12-17 02:39:20,156 | INFO     | will attempt to kill all subprocesses of pid=3353061
[2025-12-17 03:40:42] 2025-12-17 02:39:20,524 | INFO     | process IDs to be killed: [3353061] (in reverse order)
[2025-12-17 03:40:42] 2025-12-17 02:39:20,606 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 03:40:42] 2025-12-17 02:39:20,606 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 03:40:42] 2025-12-17 02:39:20,617 | INFO     | did not find any defunct processes belonging to 3353061
[2025-12-17 03:40:42] 2025-12-17 02:39:20,627 | INFO     | did not find any defunct processes belonging to 3353061
[2025-12-17 03:40:42] 2025-12-17 02:39:20,627 | INFO     | ready for new job
[2025-12-17 03:40:42] 2025-12-17 02:39:20,627 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 03:40:42] 2025-12-17 02:39:20,631 | INFO     | ***************************************
[2025-12-17 03:40:42] 2025-12-17 02:39:20,631 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 03:40:42] 2025-12-17 02:39:20,632 | INFO     | ***************************************
[2025-12-17 03:40:42] 2025-12-17 02:39:20,632 | INFO     | 
[2025-12-17 03:40:42] 2025-12-17 02:39:20,634 | INFO     | architecture information:
[2025-12-17 03:40:42] 2025-12-17 02:39:20,634 | INFO     | executing command: cat /etc/os-release
[2025-12-17 03:40:42] 2025-12-17 02:39:20,647 | INFO     | cat /etc/os-release:
[2025-12-17 03:40:42] NAME="CentOS Linux"
[2025-12-17 03:40:42] VERSION="7 (Core)"
[2025-12-17 03:40:42] ID="centos"
[2025-12-17 03:40:42] ID_LIKE="rhel fedora"
[2025-12-17 03:40:42] VERSION_ID="7"
[2025-12-17 03:40:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 03:40:42] ANSI_COLOR="0;31"
[2025-12-17 03:40:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 03:40:42] HOME_URL="https://www.centos.org/"
[2025-12-17 03:40:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 03:40:42] 
[2025-12-17 03:40:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 03:40:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 03:40:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 03:40:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 03:40:42] 
[2025-12-17 03:40:42] 2025-12-17 02:39:20,648 | INFO     | ***************************************
[2025-12-17 03:40:42] 2025-12-17 02:39:21,151 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2025-12-17 03:40:42] 2025-12-17 02:39:21,168 | INFO     | sufficient remaining disk space (1674488840192 B)
[2025-12-17 03:40:42] 2025-12-17 02:39:21,168 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 03:40:42] 2025-12-17 02:39:21,168 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 03:40:42] 2025-12-17 02:39:21,169 | INFO     | update_server=False
[2025-12-17 03:40:42] 2025-12-17 02:39:21,169 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 03:40:42] 2025-12-17 02:39:21,604 | INFO     | all data control threads have been joined
[2025-12-17 03:40:42] 2025-12-17 02:39:21,613 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 03:40:42] 2025-12-17 02:39:21,625 | INFO     | all job control threads have been joined
[2025-12-17 03:40:42] 2025-12-17 02:39:21,664 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 03:40:42] 2025-12-17 02:39:21,665 | INFO     | aborting loop
[2025-12-17 03:40:42] 2025-12-17 02:39:22,174 | INFO     | [job] retrieve thread has finished
[2025-12-17 03:40:42] 2025-12-17 02:39:22,310 | INFO     | all payload control threads have been joined
[2025-12-17 03:40:42] 2025-12-17 02:39:22,444 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 03:40:42] 2025-12-17 02:39:22,470 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 03:40:42] 2025-12-17 02:39:22,543 | INFO     | [job] validate thread has finished
[2025-12-17 03:40:42] 2025-12-17 02:39:22,593 | INFO     | [payload] validate_post thread has finished
[2025-12-17 03:40:42] 2025-12-17 02:39:22,610 | INFO     | [data] control thread has finished
[2025-12-17 03:40:42] 2025-12-17 02:39:22,623 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 03:40:42] 2025-12-17 02:39:22,630 | INFO     | [job] control thread has finished
[2025-12-17 03:40:42] 2025-12-17 02:39:22,670 | INFO     | [job] job monitor thread has finished
[2025-12-17 03:40:42] 2025-12-17 02:39:22,708 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 03:40:42] 2025-12-17 02:39:22,910 | INFO     | [data] copytool_in thread has finished
[2025-12-17 03:40:42] 2025-12-17 02:39:23,315 | INFO     | [payload] control thread has finished
[2025-12-17 03:40:42] 2025-12-17 02:39:23,474 | INFO     | [payload] failed_post thread has finished
[2025-12-17 03:40:42] 2025-12-17 02:39:23,618 | INFO     | [data] copytool_out thread has finished
[2025-12-17 03:40:42] 2025-12-17 02:39:24,131 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 03:40:42] 2025-12-17 02:39:25,136 | INFO     | [job] queue monitor thread has finished
[2025-12-17 03:40:42] 2025-12-17 02:39:26,449 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 03:40:42] 2025-12-17 02:39:31,529 | INFO     | job.realtimelogging is not enabled
[2025-12-17 03:40:42] 2025-12-17 02:39:32,535 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 03:40:42] 2025-12-17 02:39:51,388 | INFO     | PID=3346357 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 03:40:42] 2025-12-17 02:39:51,388 | INFO     | .. there are 3 such processes running
[2025-12-17 03:40:42] 2025-12-17 02:39:51,389 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 03:40:42] 2025-12-17 02:39:51,390 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 03:40:42] 2025-12-17 02:39:51,390 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 03:40:42] 2025-12-17 02:39:58,131 | INFO     | [monitor] cgroup control has ended
[2025-12-17 03:40:42] 2025-12-17 02:39:59,232 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22664075982656)>', '<ExcThread(monitor, started 22663839844096)>']
[2025-12-17 03:40:42] 2025-12-17 02:39:59,428 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 03:40:42] 2025-12-17 02:39:59,429 | INFO     | [monitor] control thread has ended
[2025-12-17 03:40:42] 2025-12-17 02:40:04,257 | INFO     | all workflow threads have been joined
[2025-12-17 03:40:42] 2025-12-17 02:40:04,258 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 03:40:42] 2025-12-17 02:40:04,258 | INFO     | traces error code: 0
[2025-12-17 03:40:42] 2025-12-17 02:40:04,258 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 03:40:42] 2025-12-17 02:40:04,378 [wrapper] ==== pilot stdout END ====
[2025-12-17 03:40:42] 2025-12-17 02:40:04,380 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 03:40:42] 2025-12-17 02:40:04,383 [wrapper] pilotpid: 3346357
[2025-12-17 03:40:42] 2025-12-17 02:40:04,386 [wrapper] Pilot exit status: 0
[2025-12-17 03:40:42] 2025-12-17 02:40:04,395 [wrapper] pandaids: 6929806026
[2025-12-17 03:40:42] 2025-12-17 02:40:04,451 [wrapper] cleanup supervisor_pilot 3577329 3346358
[2025-12-17 03:40:42] 2025-12-17 02:40:04,453 [wrapper] Test setup, not cleaning
[2025-12-17 03:40:42] 2025-12-17 02:40:04,455 [wrapper] apfmon messages muted
[2025-12-17 03:40:42] 2025-12-17 02:40:04,458 [wrapper] ==== wrapper stdout END ====
[2025-12-17 03:40:42] 2025-12-17 02:40:04,460 [wrapper] ==== wrapper stderr END ====
[2025-12-17 03:40:42]  *** Error codes and diagnostics ***
[2025-12-17 03:40:42]     "exeErrorCode": 0,
[2025-12-17 03:40:42]     "exeErrorDiag": "",
[2025-12-17 03:40:42]     "pilotErrorCode": 0,
[2025-12-17 03:40:42]     "pilotErrorDiag": "",
[2025-12-17 03:40:42]  *** Listing of results directory ***
[2025-12-17 03:40:42] total 408532
[2025-12-17 03:40:42] -rwx------ 1 boinc boinc     36322 Dec 15 16:56 runpilot2-wrapper.sh
[2025-12-17 03:40:42] -rw-r--r-- 1 boinc boinc      5112 Dec 15 16:57 queuedata.json
[2025-12-17 03:40:42] -rw-r--r-- 1 boinc boinc    579449 Dec 15 16:57 pilot3.tar.gz
[2025-12-17 03:40:42] -rw-r--r-- 1 boinc boinc       100 Dec 16 22:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 03:40:42] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 22:13 run_atlas
[2025-12-17 03:40:42] -rw-r--r-- 1 boinc boinc       105 Dec 16 22:13 job.xml
[2025-12-17 03:40:42] -rw-r--r-- 1 boinc boinc      6424 Dec 16 22:13 init_data.xml
[2025-12-17 03:40:42] -rw-r--r-- 2 boinc boinc 205297677 Dec 16 22:13 EVNT.47905905._000029.pool.root.1
[2025-12-17 03:40:42] -rw-r--r-- 2 boinc boinc     15847 Dec 16 22:13 start_atlas.sh
[2025-12-17 03:40:42] drwxrwx--x 2 boinc boinc      4096 Dec 16 22:13 shared
[2025-12-17 03:40:42] -rw-r--r-- 2 boinc boinc    592386 Dec 16 22:13 input.tar.gz
[2025-12-17 03:40:42] -rw-r--r-- 1 boinc boinc         0 Dec 16 22:13 boinc_lockfile
[2025-12-17 03:40:42] -rw-r--r-- 1 boinc boinc      2476 Dec 16 22:13 pandaJob.out
[2025-12-17 03:40:42] -rw------- 1 boinc boinc    987409 Dec 16 22:13 agis_schedconf.cvmfs.json
[2025-12-17 03:40:42] drwx------ 5 boinc boinc      4096 Dec 16 22:13 pilot3
[2025-12-17 03:40:42] -rw------- 1 boinc boinc 202672632 Dec 17 03:38 HITS.47905907._000638.pool.root.1
[2025-12-17 03:40:42] -rw-r--r-- 1 boinc boinc       528 Dec 17 03:38 boinc_task_state.xml
[2025-12-17 03:40:42] -rw------- 1 boinc boinc      1037 Dec 17 03:39 memory_monitor_summary.json
[2025-12-17 03:40:42] -rw------- 1 boinc boinc   1516240 Dec 17 03:39 agis_ddmendpoints.agis.ALL.json
[2025-12-17 03:40:42] -rw------- 1 boinc boinc    478149 Dec 17 03:39 log.47905907._000638.job.log.tgz.1
[2025-12-17 03:40:42] -rw------- 1 boinc boinc      7821 Dec 17 03:39 heartbeat.json
[2025-12-17 03:40:42] -rw------- 1 boinc boinc        95 Dec 17 03:39 pilot_heartbeat.json
[2025-12-17 03:40:42] -rw------- 1 boinc boinc      4906 Dec 17 03:40 pilotlog.txt
[2025-12-17 03:40:42] -rw------- 1 boinc boinc   2745793 Dec 17 03:40 log.47905907._000638.job.log.1
[2025-12-17 03:40:42] -rw------- 1 boinc boinc       357 Dec 17 03:40 output.list
[2025-12-17 03:40:42] -rw-r--r-- 1 boinc boinc       620 Dec 17 03:40 runtime_log
[2025-12-17 03:40:42] -rw------- 1 boinc boinc   3246080 Dec 17 03:40 result.tar.gz
[2025-12-17 03:40:42] -rw-r--r-- 1 boinc boinc      9206 Dec 17 03:40 runtime_log.err
[2025-12-17 03:40:42] -rw------- 1 boinc boinc       666 Dec 17 03:40 FzIMDmi6Pp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCOYKDmxzfsIn.diag
[2025-12-17 03:40:42] -rw-r--r-- 1 boinc boinc        27 Dec 17 03:40 wrapper_checkpoint.txt
[2025-12-17 03:40:42] -rw-r--r-- 1 boinc boinc      8192 Dec 17 03:40 boinc_mmap_file
[2025-12-17 03:40:42] -rw-r--r-- 1 boinc boinc     21176 Dec 17 03:40 stderr.txt
[2025-12-17 03:40:42] HITS file was successfully produced:
[2025-12-17 03:40:42] -rw------- 1 boinc boinc 202672632 Dec 17 03:38 shared/HITS.pool.root.1
[2025-12-17 03:40:42]  *** Contents of shared directory: ***
[2025-12-17 03:40:42] total 402188
[2025-12-17 03:40:42] -rw-r--r-- 2 boinc boinc 205297677 Dec 16 22:13 ATLAS.root_0
[2025-12-17 03:40:42] -rw-r--r-- 2 boinc boinc     15847 Dec 16 22:13 start_atlas.sh
[2025-12-17 03:40:42] -rw-r--r-- 2 boinc boinc    592386 Dec 16 22:13 input.tar.gz
[2025-12-17 03:40:42] -rw------- 1 boinc boinc 202672632 Dec 17 03:38 HITS.pool.root.1
[2025-12-17 03:40:42] -rw------- 1 boinc boinc   3246080 Dec 17 03:40 result.tar.gz
03:40:44 (3342564): run_atlas exited; CPU time 75633.822285
03:40:44 (3342564): called boinc_finish(0)

</stderr_txt>
]]>

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