Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:26:52 (1340930): wrapper (7.7.26015): starting
08:26:52 (1340930): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 08:26:52] Arguments: --nthreads 4
[2025-12-16 08:26:52] Threads: 4
[2025-12-16 08:26:52] Checking for CVMFS
[2025-12-16 08:26:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 08:26:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 08:26:52] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 08:26:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 08:26:52] 2.9.2.0 31218 4646 100680 154061 0 57 19072034 36864001 0 130560 0 3444728 99.990 167986 9334 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-16 08:26:52] CVMFS is ok
[2025-12-16 08:26:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 08:26:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 08:26:52] Further information can be found at the LHC@home message board.
[2025-12-16 08:26:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 08:26:52] Checking for apptainer binary...
[2025-12-16 08:26:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 08:26:52] Running /usr/bin/apptainer --version
[2025-12-16 08:26:52] apptainer version 1.4.1-1.1
[2025-12-16 08:26:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 08:26:52] thA332a
[2025-12-16 08:26:52] apptainer works
[2025-12-16 08:26:52] Set ATHENA_PROC_NUMBER=4
[2025-12-16 08:26:52] Set ATHENA_CORE_NUMBER=4
[2025-12-16 08:26:52] Starting ATLAS job with PandaID=6929808365
[2025-12-16 08:26:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 10:06:14]  *** The last 200 lines of the pilot log: ***
[2025-12-16 10:06:14] 2025-12-16 09:05:33,446 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 10:06:14] 2025-12-16 09:05:33,446 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 10:06:14] 2025-12-16 09:05:33,446 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 10:06:14] 2025-12-16 09:05:33,446 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 10:06:14] 2025-12-16 09:05:33,446 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 10:06:14] 2025-12-16 09:05:33,446 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 10:06:14] 2025-12-16 09:05:33,446 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 10:06:14] 2025-12-16 09:05:33,446 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 10:06:14] 2025-12-16 09:05:33,446 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 10:06:14] 2025-12-16 09:05:33,446 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 10:06:14] 2025-12-16 09:05:33,446 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 10:06:14] 2025-12-16 09:05:33,446 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 10:06:14] 2025-12-16 09:05:33,446 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 10:06:14] 2025-12-16 09:05:33,446 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 10:06:14] 2025-12-16 09:05:33,446 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 10:06:14] 2025-12-16 09:05:33,446 | INFO     | job 6929808365 has completed (purged errors)
[2025-12-16 10:06:14] 2025-12-16 09:05:33,446 | INFO     | overall cleanup function is called
[2025-12-16 10:06:14] 2025-12-16 09:05:34,453 | INFO     | --- collectZombieJob: --- 10, [1351312]
[2025-12-16 10:06:14] 2025-12-16 09:05:34,453 | INFO     | zombie collector waiting for pid 1351312
[2025-12-16 10:06:14] 2025-12-16 09:05:34,453 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 10:06:14] 2025-12-16 09:05:34,453 | INFO     | collected zombie processes
[2025-12-16 10:06:14] 2025-12-16 09:05:34,453 | INFO     | will attempt to kill all subprocesses of pid=1351312
[2025-12-16 10:06:14] 2025-12-16 09:05:34,498 | INFO     | process IDs to be killed: [1351312] (in reverse order)
[2025-12-16 10:06:14] 2025-12-16 09:05:34,529 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 10:06:14] 2025-12-16 09:05:34,529 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 10:06:14] 2025-12-16 09:05:34,531 | INFO     | did not find any defunct processes belonging to 1351312
[2025-12-16 10:06:14] 2025-12-16 09:05:34,533 | INFO     | did not find any defunct processes belonging to 1351312
[2025-12-16 10:06:14] 2025-12-16 09:05:34,533 | INFO     | ready for new job
[2025-12-16 10:06:14] 2025-12-16 09:05:34,533 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 10:06:14] 2025-12-16 09:05:34,533 | INFO     | ***************************************
[2025-12-16 10:06:14] 2025-12-16 09:05:34,533 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 10:06:14] 2025-12-16 09:05:34,534 | INFO     | ***************************************
[2025-12-16 10:06:14] 2025-12-16 09:05:34,534 | INFO     | 
[2025-12-16 10:06:14] 2025-12-16 09:05:34,534 | INFO     | architecture information:
[2025-12-16 10:06:14] 2025-12-16 09:05:34,534 | INFO     | executing command: cat /etc/os-release
[2025-12-16 10:06:14] 2025-12-16 09:05:34,548 | INFO     | cat /etc/os-release:
[2025-12-16 10:06:14] NAME="CentOS Linux"
[2025-12-16 10:06:14] VERSION="7 (Core)"
[2025-12-16 10:06:14] ID="centos"
[2025-12-16 10:06:14] ID_LIKE="rhel fedora"
[2025-12-16 10:06:14] VERSION_ID="7"
[2025-12-16 10:06:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 10:06:14] ANSI_COLOR="0;31"
[2025-12-16 10:06:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 10:06:14] HOME_URL="https://www.centos.org/"
[2025-12-16 10:06:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 10:06:14] 
[2025-12-16 10:06:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 10:06:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 10:06:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 10:06:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 10:06:14] 
[2025-12-16 10:06:14] 2025-12-16 09:05:34,548 | INFO     | ***************************************
[2025-12-16 10:06:14] 2025-12-16 09:05:34,802 | WARNING  | process 1351312 can no longer be monitored (due to stat problems) - aborting
[2025-12-16 10:06:14] 2025-12-16 09:05:34,834 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 10:06:14] 2025-12-16 09:05:34,874 | INFO     | number of running child processes to parent process 1351312: 1
[2025-12-16 10:06:14] 2025-12-16 09:05:34,874 | INFO     | maximum number of monitored processes: 6
[2025-12-16 10:06:14] 2025-12-16 09:05:34,874 | INFO     | aborting job monitoring since job object (job id=6929808365) has expired
[2025-12-16 10:06:14] 2025-12-16 09:05:35,051 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-16 10:06:14] 2025-12-16 09:05:35,068 | INFO     | sufficient remaining disk space (341059829760 B)
[2025-12-16 10:06:14] 2025-12-16 09:05:35,068 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 10:06:14] 2025-12-16 09:05:35,068 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 10:06:14] 2025-12-16 09:05:35,069 | INFO     | update_server=False
[2025-12-16 10:06:14] 2025-12-16 09:05:35,069 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 10:06:14] 2025-12-16 09:05:35,069 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 10:06:14] 2025-12-16 09:05:35,069 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 10:06:14] 2025-12-16 09:05:35,069 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-16 10:06:14] 2025-12-16 09:05:35,069 | INFO     | will abort loop
[2025-12-16 10:06:14] 2025-12-16 09:05:35,069 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 10:06:14] 2025-12-16 09:05:35,069 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 10:06:14] 2025-12-16 09:05:35,070 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 10:06:14] 2025-12-16 09:05:35,437 | INFO     | all data control threads have been joined
[2025-12-16 10:06:14] 2025-12-16 09:05:35,723 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 10:06:14] 2025-12-16 09:05:36,074 | INFO     | [job] retrieve thread has finished
[2025-12-16 10:06:14] 2025-12-16 09:05:36,074 | INFO     | [job] queue monitor thread has finished
[2025-12-16 10:06:14] 2025-12-16 09:05:36,075 | INFO     | [job] job monitor thread has finished
[2025-12-16 10:06:14] 2025-12-16 09:05:36,261 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 10:06:14] 2025-12-16 09:05:36,283 | INFO     | all job control threads have been joined
[2025-12-16 10:06:14] 2025-12-16 09:05:36,371 | INFO     | all payload control threads have been joined
[2025-12-16 10:06:14] 2025-12-16 09:05:36,443 | INFO     | [data] control thread has finished
[2025-12-16 10:06:14] 2025-12-16 09:05:36,798 | INFO     | [job] validate thread has finished
[2025-12-16 10:06:14] 2025-12-16 09:05:36,803 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 10:06:14] 2025-12-16 09:05:36,916 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 10:06:14] 2025-12-16 09:05:36,994 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 10:06:14] 2025-12-16 09:05:37,289 | INFO     | [job] control thread has finished
[2025-12-16 10:06:14] 2025-12-16 09:05:37,351 | INFO     | [payload] validate_post thread has finished
[2025-12-16 10:06:14] 2025-12-16 09:05:37,372 | INFO     | [payload] control thread has finished
[2025-12-16 10:06:14] 2025-12-16 09:05:37,379 | INFO     | [data] copytool_in thread has finished
[2025-12-16 10:06:14] 2025-12-16 09:05:37,650 | INFO     | [payload] failed_post thread has finished
[2025-12-16 10:06:14] 2025-12-16 09:05:37,729 | INFO     | [data] copytool_out thread has finished
[2025-12-16 10:06:14] 2025-12-16 09:05:40,268 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 10:06:14] 2025-12-16 09:05:45,548 | INFO     | job.realtimelogging is not enabled
[2025-12-16 10:06:14] 2025-12-16 09:05:46,554 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 10:06:14] 2025-12-16 09:06:07,086 | INFO     | [monitor] cgroup control has ended
[2025-12-16 10:06:14] 2025-12-16 09:06:09,175 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139985764034368)>', '<ExcThread(monitor, started 139985130878720)>']
[2025-12-16 10:06:14] 2025-12-16 09:06:09,247 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 10:06:14] 2025-12-16 09:06:09,247 | INFO     | [monitor] control thread has ended
[2025-12-16 10:06:14] 2025-12-16 09:06:14,201 | INFO     | all workflow threads have been joined
[2025-12-16 10:06:14] 2025-12-16 09:06:14,201 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 10:06:14] 2025-12-16 09:06:14,201 | INFO     | traces error code: 0
[2025-12-16 10:06:14] 2025-12-16 09:06:14,202 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 10:06:14] 2025-12-16 09:06:14,279 [wrapper] ==== pilot stdout END ====
[2025-12-16 10:06:14] 2025-12-16 09:06:14,283 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 10:06:14] 2025-12-16 09:06:14,287 [wrapper] pilotpid: 1344733
[2025-12-16 10:06:14] 2025-12-16 09:06:14,291 [wrapper] Pilot exit status: 0
[2025-12-16 10:06:14] 2025-12-16 09:06:14,302 [wrapper] pandaids: 6929808365
[2025-12-16 10:06:14] 2025-12-16 09:06:14,322 [wrapper] cleanup supervisor_pilot 1363551 1344734
[2025-12-16 10:06:14] 2025-12-16 09:06:14,326 [wrapper] Test setup, not cleaning
[2025-12-16 10:06:14] 2025-12-16 09:06:14,329 [wrapper] apfmon messages muted
[2025-12-16 10:06:14] 2025-12-16 09:06:14,333 [wrapper] ==== wrapper stdout END ====
[2025-12-16 10:06:14] 2025-12-16 09:06:14,336 [wrapper] ==== wrapper stderr END ====
[2025-12-16 10:06:14]  *** Error codes and diagnostics ***
[2025-12-16 10:06:14]     "exeErrorCode": 0,
[2025-12-16 10:06:14]     "exeErrorDiag": "",
[2025-12-16 10:06:14]     "pilotErrorCode": 0,
[2025-12-16 10:06:14]     "pilotErrorDiag": "",
[2025-12-16 10:06:14]  *** Listing of results directory ***
[2025-12-16 10:06:14] total 443564
[2025-12-16 10:06:14] -rwx------ 1 boinc boinc     36322 Dec 15 16:55 runpilot2-wrapper.sh
[2025-12-16 10:06:14] -rw-r--r-- 1 boinc boinc      5112 Dec 15 16:57 queuedata.json
[2025-12-16 10:06:14] -rw-r--r-- 1 boinc boinc    579449 Dec 15 16:57 pilot3.tar.gz
[2025-12-16 10:06:14] -rw-r--r-- 1 boinc boinc       100 Dec 16 08:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 10:06:14] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 08:26 run_atlas
[2025-12-16 10:06:14] -rw-r--r-- 1 boinc boinc       105 Dec 16 08:26 job.xml
[2025-12-16 10:06:14] -rw-r--r-- 2 boinc boinc 224241231 Dec 16 08:26 EVNT.47898824._000088.pool.root.1
[2025-12-16 10:06:14] -rw-r--r-- 2 boinc boinc    592387 Dec 16 08:26 input.tar.gz
[2025-12-16 10:06:14] -rw-r--r-- 2 boinc boinc     15847 Dec 16 08:26 start_atlas.sh
[2025-12-16 10:06:14] drwxrwx--x 2 boinc boinc      4096 Dec 16 08:26 shared
[2025-12-16 10:06:14] -rw-r--r-- 1 boinc boinc         0 Dec 16 08:26 boinc_setup_complete
[2025-12-16 10:06:14] -rw-r--r-- 1 boinc boinc      6370 Dec 16 08:26 init_data.xml
[2025-12-16 10:06:14] -rw-r--r-- 1 boinc boinc         0 Dec 16 08:26 boinc_lockfile
[2025-12-16 10:06:14] -rw-r--r-- 1 boinc boinc      2513 Dec 16 08:26 pandaJob.out
[2025-12-16 10:06:14] -rw------- 1 boinc boinc    994531 Dec 16 08:26 agis_schedconf.cvmfs.json
[2025-12-16 10:06:14] -rw------- 1 boinc boinc   1516240 Dec 16 08:26 agis_ddmendpoints.agis.ALL.json
[2025-12-16 10:06:14] drwx------ 5 boinc boinc      4096 Dec 16 08:26 pilot3
[2025-12-16 10:06:14] -rw------- 1 boinc boinc 223745551 Dec 16 10:05 HITS.47898826._002247.pool.root.1
[2025-12-16 10:06:14] -rw-r--r-- 1 boinc boinc       529 Dec 16 10:05 boinc_task_state.xml
[2025-12-16 10:06:14] -rw------- 1 boinc boinc      1021 Dec 16 10:05 memory_monitor_summary.json
[2025-12-16 10:06:14] -rw------- 1 boinc boinc        95 Dec 16 10:05 pilot_heartbeat.json
[2025-12-16 10:06:14] -rw------- 1 boinc boinc    296984 Dec 16 10:05 log.47898826._002247.job.log.tgz.1
[2025-12-16 10:06:14] -rw------- 1 boinc boinc      7755 Dec 16 10:05 heartbeat.json
[2025-12-16 10:06:14] -rw-r--r-- 1 boinc boinc      8192 Dec 16 10:05 boinc_mmap_file
[2025-12-16 10:06:14] -rw-r--r-- 1 boinc boinc        27 Dec 16 10:05 wrapper_checkpoint.txt
[2025-12-16 10:06:14] -rw------- 1 boinc boinc      5152 Dec 16 10:06 pilotlog.txt
[2025-12-16 10:06:14] -rw------- 1 boinc boinc    858295 Dec 16 10:06 log.47898826._002247.job.log.1
[2025-12-16 10:06:14] -rw------- 1 boinc boinc       357 Dec 16 10:06 output.list
[2025-12-16 10:06:14] -rw-r--r-- 1 boinc boinc       620 Dec 16 10:06 runtime_log
[2025-12-16 10:06:14] -rw------- 1 boinc boinc   1177600 Dec 16 10:06 result.tar.gz
[2025-12-16 10:06:14] -rw-r--r-- 1 boinc boinc      8902 Dec 16 10:06 runtime_log.err
[2025-12-16 10:06:14] -rw------- 1 boinc boinc       660 Dec 16 10:06 fmPKDmQ6Pp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJuTKDmFLTOCo.diag
[2025-12-16 10:06:14] -rw-r--r-- 1 boinc boinc     12999 Dec 16 10:06 stderr.txt
[2025-12-16 10:06:14] HITS file was successfully produced:
[2025-12-16 10:06:14] -rw------- 1 boinc boinc 223745551 Dec 16 10:05 shared/HITS.pool.root.1
[2025-12-16 10:06:14]  *** Contents of shared directory: ***
[2025-12-16 10:06:14] total 439244
[2025-12-16 10:06:14] -rw-r--r-- 2 boinc boinc 224241231 Dec 16 08:26 ATLAS.root_0
[2025-12-16 10:06:14] -rw-r--r-- 2 boinc boinc    592387 Dec 16 08:26 input.tar.gz
[2025-12-16 10:06:14] -rw-r--r-- 2 boinc boinc     15847 Dec 16 08:26 start_atlas.sh
[2025-12-16 10:06:14] -rw------- 1 boinc boinc 223745551 Dec 16 10:05 HITS.pool.root.1
[2025-12-16 10:06:14] -rw------- 1 boinc boinc   1177600 Dec 16 10:06 result.tar.gz
10:06:15 (1340930): run_atlas exited; CPU time 22629.529461
10:06:15 (1340930): called boinc_finish(0)

</stderr_txt>
]]>

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