Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-12-16 06:52:37 (26333): vboxwrapper version 26210
2025-12-16 06:52:37 (26333): BOINC client version: 8.2.5
2025-12-16 06:52:37 (26333): Detected: VirtualBox VboxManage Interface (Version: 7.2.4)
2025-12-16 06:52:37 (26333): Detected: Sandbox Configuration Enabled
2025-12-16 06:52:37 (26333): Successfully copied 'init_data.xml' to the shared directory.
2025-12-16 06:52:37 (26333): Create VM. (boinc_ac18c0cdb0310c0e, slot#2)
2025-12-16 06:52:37 (26333): Setting Memory Size for VM. (4300MB)
2025-12-16 06:52:37 (26333): Setting CPU Count for VM. (3)
2025-12-16 06:52:37 (26333): Setting Chipset Options for VM.
2025-12-16 06:52:37 (26333): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-12-16 06:52:37 (26333): Setting Boot Options for VM.
2025-12-16 06:52:37 (26333): Setting Network Configuration for NAT. (Driver: virtio)
2025-12-16 06:52:37 (26333): Enabling VM Network Access.
2025-12-16 06:52:37 (26333): Disabling USB Support for VM.
2025-12-16 06:52:38 (26333): Disabling COM Port Support for VM.
2025-12-16 06:52:38 (26333): Disabling Audio Support for VM.
2025-12-16 06:52:38 (26333): Disabling Clipboard Support for VM.
2025-12-16 06:52:38 (26333): Disabling Drag and Drop Support for VM.
2025-12-16 06:52:38 (26333): Adding storage controller(s) to VM.
2025-12-16 06:52:38 (26333): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-12-16 06:52:38 (26333): Adding VirtualBox Guest Additions to VM.
2025-12-16 06:52:38 (26333): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-12-16 06:52:38 (26333): forwarding host port 50726 to guest port 80
2025-12-16 06:52:38 (26333): Enabling remote desktop for VM.
2025-12-16 06:52:38 (26333): Enabling shared directory for VM.
2025-12-16 06:52:38 (26333): Starting VM using VBoxManage interface. (boinc_ac18c0cdb0310c0e, slot#2)
2025-12-16 06:52:41 (26333): Successfully started VM. (PID = '26408')
2025-12-16 06:52:41 (26333): Reporting VM Process ID to BOINC.
2025-12-16 06:52:41 (26333): Guest Log: BIOS: VirtualBox 7.2.4
2025-12-16 06:52:41 (26333): Guest Log: CPUID EDX: 0x178bfbff
2025-12-16 06:52:41 (26333): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-12-16 06:52:41 (26333): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-12-16 06:52:41 (26333): VM state change detected. (old = 'poweredoff', new = 'running')
2025-12-16 06:52:41 (26333): Detected: Web Application Enabled (http://localhost:50726)
2025-12-16 06:52:41 (26333): Detected: Remote Desktop Enabled (localhost:50727)
2025-12-16 06:52:41 (26333): Preference change detected
2025-12-16 06:52:41 (26333): Setting CPU throttle for VM. (50%)
2025-12-16 06:52:41 (26333): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-12-16 06:52:43 (26333): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-12-16 06:52:43 (26333): Guest Log: BIOS: Booting from Hard Disk...
2025-12-16 06:52:47 (26333): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-12-16 06:52:47 (26333): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-12-16 06:52:47 (26333): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-12-16 06:52:48 (26333): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-12-16 06:52:53 (26333): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-12-16 06:52:53 (26333): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-12-16 06:53:04 (26333): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-12-16 06:53:04 (26333): Guest Log: 00:00:00.000120 main     Log opened 2025-12-16T06:53:02.151106000Z
2025-12-16 06:53:04 (26333): Guest Log: 00:00:00.000222 main     OS Product: Linux
2025-12-16 06:53:04 (26333): Guest Log: 00:00:00.000265 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-12-16 06:53:04 (26333): Guest Log: 00:00:00.000304 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-12-16 06:53:04 (26333): Guest Log: 00:00:00.000342 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-12-16 06:53:04 (26333): Guest Log: 00:00:00.000343 main     Process ID: 1297
2025-12-16 06:53:04 (26333): Guest Log: 00:00:00.000344 main     Package type: LINUX_64BITS_GENERIC
2025-12-16 06:53:04 (26333): Guest Log: 00:00:00.001700 main     5.2.32 r132073 started. Verbose level = 0
2025-12-16 06:53:04 (26333): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-12-16 06:53:04 (26333): Guest Log: [INFO] Mounting shared directory
2025-12-16 06:53:04 (26333): Guest Log: [INFO] Checking for init_data.xml
2025-12-16 06:53:07 (26333): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-12-16 06:53:07 (26333): Guest Log: [INFO] Detected branch: prod
2025-12-16 06:53:07 (26333): Guest Log: This is the prod version of the ATLAS job wrapper
2025-12-16 06:53:07 (26333): Guest Log: Copying input files
2025-12-16 06:53:10 (26333): Guest Log: Copied input files into RunAtlas.
2025-12-16 06:53:10 (26333): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-12-16 06:53:10 (26333): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-12-16 06:53:10 (26333): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-12-16 06:53:10 (26333): Guest Log: Further information can be found at the LHC@home message board.
2025-12-16 06:53:19 (26333): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-12-16 06:53:19 (26333): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-12-16 06:53:19 (26333): Guest Log: 2.6.3.0 1572 0 32200 154061 4 1 3117737 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-12-16 06:53:20 (26333): Guest Log: copied the webapp to /var/www
2025-12-16 06:53:20 (26333): Guest Log: ATHENA_PROC_NUMBER=3
2025-12-16 06:53:20 (26333): Guest Log: ATHENA_CORE_NUMBER=3
2025-12-16 06:53:20 (26333): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-12-16 06:53:20 (26333): Guest Log:  *** Starting ATLAS job. (PandaID=6929806694 taskID=47898826) ***
2025-12-16 08:32:17 (26333): Status Report: Elapsed Time: '6000.000000'
2025-12-16 08:32:17 (26333): Status Report: CPU Time: '14277.720000'
2025-12-16 10:11:54 (26333): Status Report: Elapsed Time: '12000.000000'
2025-12-16 10:11:54 (26333): Status Report: CPU Time: '29119.760000'
2025-12-16 10:19:11 (26333): Guest Log:  *** Job finished ***
2025-12-16 10:19:11 (26333): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-12-16 10:19:11 (26333): Guest Log: 2025-12-16 10:18:30,100 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-12-16 10:19:11 (26333): Guest Log: 2025-12-16 10:18:30,101 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-12-16 10:19:11 (26333): Guest Log: 2025-12-16 10:18:32,514 | INFO     | [monitor] cgroup control has ended
2025-12-16 10:19:11 (26333): Guest Log: 2025-12-16 10:18:34,229 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140258923358016)>', '<ExcThread(monitor, started 140258154882816)>']
2025-12-16 10:19:11 (26333): Guest Log: 2025-12-16 10:18:35,108 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-12-16 10:19:11 (26333): Guest Log: 2025-12-16 10:18:35,108 | INFO     | [monitor] control thread has ended
2025-12-16 10:19:11 (26333): Guest Log: 2025-12-16 10:18:39,235 | INFO     | all workflow threads have been joined
2025-12-16 10:19:11 (26333): Guest Log: 2025-12-16 10:18:39,235 | INFO     | end of generic workflow (traces error code: 0)
2025-12-16 10:19:11 (26333): Guest Log: 2025-12-16 10:18:39,236 | INFO     | traces error code: 0
2025-12-16 10:19:11 (26333): Guest Log: 2025-12-16 10:18:39,236 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-12-16 10:19:11 (26333): Guest Log: 2025-12-16 10:18:39,354 [wrapper] ==== pilot stdout END ====
2025-12-16 10:19:11 (26333): Guest Log: 2025-12-16 10:18:39,360 [wrapper] ==== wrapper stdout RESUME ====
2025-12-16 10:19:11 (26333): Guest Log: 2025-12-16 10:18:39,454 [wrapper] pilotpid: 5960
2025-12-16 10:19:11 (26333): Guest Log: 2025-12-16 10:18:39,460 [wrapper] Pilot exit status: 0
2025-12-16 10:19:11 (26333): Guest Log: 2025-12-16 10:18:39,663 [wrapper] pandaids: 6929806694
2025-12-16 10:19:11 (26333): Guest Log: 2025-12-16 10:18:39,881 [wrapper] cleanup supervisor_pilot  9687 5961
2025-12-16 10:19:11 (26333): Guest Log: 2025-12-16 10:18:39,969 [wrapper] Test setup, not cleaning
2025-12-16 10:19:11 (26333): Guest Log: 2025-12-16 10:18:39,976 [wrapper] apfmon messages muted
2025-12-16 10:19:11 (26333): Guest Log: 2025-12-16 10:18:39,982 [wrapper] ==== wrapper stdout END ====
2025-12-16 10:19:11 (26333): Guest Log: 2025-12-16 10:18:40,070 [wrapper] ==== wrapper stderr END ====
2025-12-16 10:19:11 (26333): Guest Log:  *** Error codes and diagnostics ***
2025-12-16 10:19:11 (26333): Guest Log:     "exeErrorCode": 0,
2025-12-16 10:19:11 (26333): Guest Log:     "exeErrorDiag": "",
2025-12-16 10:19:11 (26333): Guest Log:     "pilotErrorCode": 0,
2025-12-16 10:19:11 (26333): Guest Log:     "pilotErrorDiag": "",
2025-12-16 10:19:11 (26333): Guest Log:  *** Listing of results directory ***
2025-12-16 10:19:11 (26333): Guest Log: total 226032
2025-12-16 10:19:11 (26333): Guest Log: -rwx------. 1 atlas atlas     36322 Dec 15 15:55 runpilot2-wrapper.sh
2025-12-16 10:19:11 (26333): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Dec 15 15:57 queuedata.json
2025-12-16 10:19:11 (26333): Guest Log: -rw-r--r--. 1 atlas atlas    579449 Dec 15 15:57 pilot3.tar.gz
2025-12-16 10:19:11 (26333): Guest Log: -rw-r-----. 1 atlas atlas     15847 Dec 16 06:53 start_atlas.sh
2025-12-16 10:19:11 (26333): Guest Log: -rw-r-----. 1 atlas atlas    592389 Dec 16 06:53 input.tar.gz
2025-12-16 10:19:11 (26333): Guest Log: -rw-r--r--. 1 atlas atlas      7660 Dec 16 06:53 init_data.xml
2025-12-16 10:19:11 (26333): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Dec 16 06:53 EVNT.47898824._000060.pool.root.1 -> /data/./ATLAS.root_0
2025-12-16 10:19:11 (26333): Guest Log: -rw-r--r--. 1 atlas atlas      2514 Dec 16 06:53 pandaJob.out
2025-12-16 10:19:11 (26333): Guest Log: -rw-------. 1 atlas atlas    994531 Dec 16 06:54 agis_schedconf.cvmfs.json
2025-12-16 10:19:11 (26333): Guest Log: drwx------. 5 atlas atlas      4096 Dec 16 06:54 pilot3
2025-12-16 10:19:11 (26333): Guest Log: -rw-------. 1 atlas atlas 224014123 Dec 16 10:17 HITS.47898826._001534.pool.root.1
2025-12-16 10:19:11 (26333): Guest Log: -rw-------. 1 atlas atlas      1032 Dec 16 10:17 memory_monitor_summary.json
2025-12-16 10:19:11 (26333): Guest Log: -rw-------. 1 atlas atlas   1516240 Dec 16 10:17 agis_ddmendpoints.agis.ALL.json
2025-12-16 10:19:11 (26333): Guest Log: -rw-------. 1 atlas atlas    335669 Dec 16 10:17 log.47898826._001534.job.log.tgz.1
2025-12-16 10:19:11 (26333): Guest Log: -rw-------. 1 atlas atlas      7826 Dec 16 10:17 heartbeat.json
2025-12-16 10:19:11 (26333): Guest Log: -rw-------. 1 atlas atlas        95 Dec 16 10:18 pilot_heartbeat.json
2025-12-16 10:19:11 (26333): Guest Log: -rw-------. 1 atlas atlas      4805 Dec 16 10:18 pilotlog.txt
2025-12-16 10:19:11 (26333): Guest Log: -rw-------. 1 atlas atlas   1466167 Dec 16 10:18 log.47898826._001534.job.log.1
2025-12-16 10:19:11 (26333): Guest Log: -rw-------. 1 atlas atlas       357 Dec 16 10:18 output.list
2025-12-16 10:19:11 (26333): Guest Log: -rw-r--r--. 1 atlas atlas       620 Dec 16 10:18 runtime_log
2025-12-16 10:19:11 (26333): Guest Log: -rw-------. 1 atlas atlas   1822720 Dec 16 10:18 result.tar.gz
2025-12-16 10:19:11 (26333): Guest Log: -rw-------. 1 atlas atlas       661 Dec 16 10:18 YFlKDmG6Pp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmBsTKDmb8LEum.diag
2025-12-16 10:19:11 (26333): Guest Log: -rw-r--r--. 1 atlas atlas      8762 Dec 16 10:18 runtime_log.err
2025-12-16 10:19:11 (26333): Guest Log: Looking for outputfile HITS.47898826._001534.pool.root.1
2025-12-16 10:19:11 (26333): Guest Log: HITS file was successfully produced
2025-12-16 10:19:11 (26333): Guest Log: -rw-------. 1 atlas atlas 224014123 Dec 16 10:17 /home/atlas/RunAtlas/HITS.47898826._001534.pool.root.1
2025-12-16 10:19:12 (26333): Guest Log: Successfully finished the ATLAS job!
2025-12-16 10:19:12 (26333): Guest Log: Copying the results back to the shared directory!
2025-12-16 10:19:12 (26333): Guest Log:  *** Contents of shared directory: ***
2025-12-16 10:19:12 (26333): Guest Log: total 222292
2025-12-16 10:19:12 (26333): Guest Log: -rw-rw----. 1 root root 225185180 Dec 16 06:52 ATLAS.root_0
2025-12-16 10:19:12 (26333): Guest Log: -rw-rw-r--. 1 root root      7660 Dec 16 06:52 init_data.xml
2025-12-16 10:19:12 (26333): Guest Log: -rw-rw----. 1 root root    592389 Dec 16 06:52 input.tar.gz
2025-12-16 10:19:12 (26333): Guest Log: -rw-r--r--. 1 root root   1822720 Dec 16  2025 result.tar.gz
2025-12-16 10:19:12 (26333): Guest Log: -rw-rw----. 1 root root     15847 Dec 16 06:52 start_atlas.sh
2025-12-16 10:19:12 (26333): Guest Log:  *** Success! Shutting down the machine. ***
2025-12-16 10:19:12 (26333): VM Completion File Detected.
2025-12-16 10:19:12 (26333): Powering off VM.
2025-12-16 10:19:12 (26333): Successfully stopped VM.
2025-12-16 10:19:12 (26333): Deregistering VM. (boinc_ac18c0cdb0310c0e, slot#2)
2025-12-16 10:19:13 (26333): Removing network bandwidth throttle group from VM.
2025-12-16 10:19:13 (26333): Removing VM from VirtualBox.
2025-12-16 10:19:18 (26333): called boinc_finish(0)

</stderr_txt>
]]>

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