Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:14:32 (2310866): wrapper (7.7.26015): starting
20:14:32 (2310866): wrapper: running run_atlas (--nthreads 4)
[2025-12-15 20:14:32] Arguments: --nthreads 4
[2025-12-15 20:14:32] Threads: 4
[2025-12-15 20:14:32] Checking for CVMFS
[2025-12-15 20:14:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 20:14:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 20:14:32] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 20:14:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 20:14:33] 2.9.2.0 2187728 35 58756 154043 0 186 19456207 36864000 0 130560 0 325468 100.000 1341 331 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-15 20:14:33] CVMFS is ok
[2025-12-15 20:14:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 20:14:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 20:14:33] Further information can be found at the LHC@home message board.
[2025-12-15 20:14:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 20:14:33] Checking for apptainer binary...
[2025-12-15 20:14:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 20:14:33] Running /usr/bin/apptainer --version
[2025-12-15 20:14:33] apptainer version 1.4.1-1.1
[2025-12-15 20:14:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 20:14:33] thA325
[2025-12-15 20:14:33] apptainer works
[2025-12-15 20:14:33] Set ATHENA_PROC_NUMBER=4
[2025-12-15 20:14:33] Set ATHENA_CORE_NUMBER=4
[2025-12-15 20:14:33] Starting ATLAS job with PandaID=6929570435
[2025-12-15 20:14:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 20:18:51]  *** The last 200 lines of the pilot log: ***
[2025-12-15 20:18:51] 2025-12-15 19:17:53,869 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 20:18:51] 2025-12-15 19:17:53,977 | INFO     | all data control threads have been joined
[2025-12-15 20:18:51] 2025-12-15 19:17:54,037 | INFO     | all job control threads have been joined
[2025-12-15 20:18:51] 2025-12-15 19:17:54,512 | INFO     | all payload control threads have been joined
[2025-12-15 20:18:51] 2025-12-15 19:17:54,659 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 20:18:51] 2025-12-15 19:17:54,793 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 20:18:51] 2025-12-15 19:17:54,793 | INFO     | aborting loop
[2025-12-15 20:18:51] 2025-12-15 19:17:54,874 | INFO     | [job] queue monitor thread has finished
[2025-12-15 20:18:51] 2025-12-15 19:17:54,875 | INFO     | [job] retrieve thread has finished
[2025-12-15 20:18:51] 2025-12-15 19:17:54,983 | INFO     | [data] control thread has finished
[2025-12-15 20:18:51] 2025-12-15 19:17:55,043 | INFO     | [job] control thread has finished
[2025-12-15 20:18:51] 2025-12-15 19:17:55,134 | INFO     | [payload] failed_post thread has finished
[2025-12-15 20:18:51] 2025-12-15 19:17:55,472 | INFO     | [job] validate thread has finished
[2025-12-15 20:18:51] 2025-12-15 19:17:55,518 | INFO     | [payload] control thread has finished
[2025-12-15 20:18:51] 2025-12-15 19:17:55,570 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 20:18:51] 2025-12-15 19:17:55,644 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 20:18:51] 2025-12-15 19:17:55,667 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 20:18:51] 2025-12-15 19:17:55,798 | INFO     | [job] job monitor thread has finished
[2025-12-15 20:18:51] 2025-12-15 19:17:55,816 | INFO     | [data] copytool_in thread has finished
[2025-12-15 20:18:51] 2025-12-15 19:17:55,876 | INFO     | [data] copytool_out thread has finished
[2025-12-15 20:18:51] 2025-12-15 19:17:56,212 | INFO     | [payload] validate_post thread has finished
[2025-12-15 20:18:51] 2025-12-15 19:17:56,284 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 20:18:51] 2025-12-15 19:17:58,666 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 20:18:51] 2025-12-15 19:18:46,048 | INFO     | [monitor] cgroup control has ended
[2025-12-15 20:18:51] 2025-12-15 19:18:46,735 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140144885598016)>', '<ExcThread(monitor, started 140144136922880)>']
[2025-12-15 20:18:51] 2025-12-15 19:18:47,153 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 20:18:51] 2025-12-15 19:18:47,154 | INFO     | [monitor] control thread has ended
[2025-12-15 20:18:51] 2025-12-15 19:18:51,756 | INFO     | all workflow threads have been joined
[2025-12-15 20:18:51] 2025-12-15 19:18:51,757 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 20:18:51] 2025-12-15 19:18:51,758 | INFO     | traces error code: 0
[2025-12-15 20:18:51] 2025-12-15 19:18:51,758 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 20:18:51] 2025-12-15 19:18:51,827 [wrapper] ==== pilot stdout END ====
[2025-12-15 20:18:51] 2025-12-15 19:18:51,831 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 20:18:51] 2025-12-15 19:18:51,835 [wrapper] pilotpid: 2314671
[2025-12-15 20:18:51] 2025-12-15 19:18:51,838 [wrapper] Pilot exit status: 0
[2025-12-15 20:18:51] 2025-12-15 19:18:51,848 [wrapper] pandaids: 6929570435
[2025-12-15 20:18:51] 2025-12-15 19:18:51,870 [wrapper] cleanup supervisor_pilot 2314677 2314672
[2025-12-15 20:18:51] 2025-12-15 19:18:51,873 [wrapper] Test setup, not cleaning
[2025-12-15 20:18:51] 2025-12-15 19:18:51,877 [wrapper] apfmon messages muted
[2025-12-15 20:18:51] 2025-12-15 19:18:51,880 [wrapper] ==== wrapper stdout END ====
[2025-12-15 20:18:51] 2025-12-15 19:18:51,884 [wrapper] ==== wrapper stderr END ====
[2025-12-15 20:18:51]  *** Error codes and diagnostics ***
[2025-12-15 20:18:51]     "exeErrorCode": 65,
[2025-12-15 20:18:51]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-15 20:18:51]     "pilotErrorCode": 1305,
[2025-12-15 20:18:51]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-15 20:18:51]  *** Listing of results directory ***
[2025-12-15 20:18:51] total 220500
[2025-12-15 20:18:51] -rw-r--r-- 1 boinc boinc    579449 Dec 15 09:08 pilot3.tar.gz
[2025-12-15 20:18:51] -rwx------ 1 boinc boinc     36322 Dec 15 09:10 runpilot2-wrapper.sh
[2025-12-15 20:18:51] -rw-r--r-- 1 boinc boinc      5112 Dec 15 09:10 queuedata.json
[2025-12-15 20:18:51] -rw-r--r-- 1 boinc boinc       100 Dec 15 20:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 20:18:51] -rwxr-xr-x 1 boinc boinc      7986 Dec 15 20:14 run_atlas
[2025-12-15 20:18:51] -rw-r--r-- 1 boinc boinc       105 Dec 15 20:14 job.xml
[2025-12-15 20:18:51] -rw-r--r-- 2 boinc boinc 221647421 Dec 15 20:14 EVNT.47898761._000458.pool.root.1
[2025-12-15 20:18:51] -rw-r--r-- 2 boinc boinc    592400 Dec 15 20:14 input.tar.gz
[2025-12-15 20:18:51] -rw-r--r-- 2 boinc boinc     15847 Dec 15 20:14 start_atlas.sh
[2025-12-15 20:18:51] drwxrwx--x 2 boinc boinc      4096 Dec 15 20:14 shared
[2025-12-15 20:18:51] -rw-r--r-- 1 boinc boinc         0 Dec 15 20:14 boinc_setup_complete
[2025-12-15 20:18:51] -rw-r--r-- 1 boinc boinc      6368 Dec 15 20:14 init_data.xml
[2025-12-15 20:18:51] -rw-r--r-- 1 boinc boinc         0 Dec 15 20:14 boinc_lockfile
[2025-12-15 20:18:51] -rw-r--r-- 1 boinc boinc      2509 Dec 15 20:14 pandaJob.out
[2025-12-15 20:18:51] -rw------- 1 boinc boinc    994497 Dec 15 20:14 agis_schedconf.cvmfs.json
[2025-12-15 20:18:51] -rw------- 1 boinc boinc   1516240 Dec 15 20:14 agis_ddmendpoints.agis.ALL.json
[2025-12-15 20:18:51] drwx------ 5 boinc boinc      4096 Dec 15 20:14 pilot3
[2025-12-15 20:18:51] -rw-r--r-- 1 boinc boinc       522 Dec 15 20:15 boinc_task_state.xml
[2025-12-15 20:18:51] -rw------- 1 boinc boinc       959 Dec 15 20:15 memory_monitor_summary.json
[2025-12-15 20:18:51] -rw------- 1 boinc boinc     33909 Dec 15 20:15 log.47898763._014590.job.log.tgz.1
[2025-12-15 20:18:51] -rw------- 1 boinc boinc        95 Dec 15 20:17 pilot_heartbeat.json
[2025-12-15 20:18:51] -rw------- 1 boinc boinc      8336 Dec 15 20:17 heartbeat.json
[2025-12-15 20:18:51] -rw-r--r-- 1 boinc boinc      8192 Dec 15 20:18 boinc_mmap_file
[2025-12-15 20:18:51] -rw-r--r-- 1 boinc boinc        22 Dec 15 20:18 wrapper_checkpoint.txt
[2025-12-15 20:18:51] -rw------- 1 boinc boinc      4556 Dec 15 20:18 pilotlog.txt
[2025-12-15 20:18:51] -rw------- 1 boinc boinc     85398 Dec 15 20:18 log.47898763._014590.job.log.1
[2025-12-15 20:18:51] -rw------- 1 boinc boinc       188 Dec 15 20:18 output.list
[2025-12-15 20:18:51] -rw-r--r-- 1 boinc boinc       620 Dec 15 20:18 runtime_log
[2025-12-15 20:18:51] -rw------- 1 boinc boinc    143360 Dec 15 20:18 result.tar.gz
[2025-12-15 20:18:51] -rw-r--r-- 1 boinc boinc      8744 Dec 15 20:18 runtime_log.err
[2025-12-15 20:18:51] -rw------- 1 boinc boinc       648 Dec 15 20:18 GMDNDmjpIp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmV5SKDmRVrfGo.diag
[2025-12-15 20:18:51] -rw-r--r-- 1 boinc boinc      6729 Dec 15 20:18 stderr.txt
[2025-12-15 20:18:51] No HITS result produced
[2025-12-15 20:18:51]  *** Contents of shared directory: ***
[2025-12-15 20:18:51] total 217196
[2025-12-15 20:18:51] -rw-r--r-- 2 boinc boinc 221647421 Dec 15 20:14 ATLAS.root_0
[2025-12-15 20:18:51] -rw-r--r-- 2 boinc boinc    592400 Dec 15 20:14 input.tar.gz
[2025-12-15 20:18:51] -rw-r--r-- 2 boinc boinc     15847 Dec 15 20:14 start_atlas.sh
[2025-12-15 20:18:51] -rw------- 1 boinc boinc    143360 Dec 15 20:18 result.tar.gz
20:18:53 (2310866): run_atlas exited; CPU time 28.084647
20:18:53 (2310866): called boinc_finish(0)

</stderr_txt>
]]>

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