Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:43:26 (1313183): wrapper (7.7.26015): starting
06:43:26 (1313183): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 06:43:26] Arguments: --nthreads 4
[2025-12-16 06:43:26] Threads: 4
[2025-12-16 06:43:26] Checking for CVMFS
[2025-12-16 06:43:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 06:43:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 06:43:26] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 06:43:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 06:43:27] 2.9.2.0 31218 4542 100796 154060 0 57 19068519 36864001 0 130560 0 3373331 99.990 166623 9335 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-16 06:43:27] CVMFS is ok
[2025-12-16 06:43:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 06:43:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 06:43:27] Further information can be found at the LHC@home message board.
[2025-12-16 06:43:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 06:43:27] Checking for apptainer binary...
[2025-12-16 06:43:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 06:43:27] Running /usr/bin/apptainer --version
[2025-12-16 06:43:27] apptainer version 1.4.1-1.1
[2025-12-16 06:43:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 06:43:27] thA332a
[2025-12-16 06:43:27] apptainer works
[2025-12-16 06:43:27] Set ATHENA_PROC_NUMBER=4
[2025-12-16 06:43:27] Set ATHENA_CORE_NUMBER=4
[2025-12-16 06:43:27] Starting ATLAS job with PandaID=6929804655
[2025-12-16 06:43:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 08:26:47]  *** The last 200 lines of the pilot log: ***
[2025-12-16 08:26:47] 2025-12-16 07:26:02,064 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 08:26:47] 2025-12-16 07:26:02,064 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 08:26:47] 2025-12-16 07:26:02,064 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 08:26:47] 2025-12-16 07:26:02,064 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 08:26:47] 2025-12-16 07:26:02,064 | INFO     | job 6929804655 has completed (purged errors)
[2025-12-16 08:26:47] 2025-12-16 07:26:02,064 | INFO     | overall cleanup function is called
[2025-12-16 08:26:47] 2025-12-16 07:26:02,298 | INFO     | PID=1316988 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 08:26:47] 2025-12-16 07:26:03,071 | INFO     | --- collectZombieJob: --- 10, [1323564]
[2025-12-16 08:26:47] 2025-12-16 07:26:03,071 | INFO     | zombie collector waiting for pid 1323564
[2025-12-16 08:26:47] 2025-12-16 07:26:03,071 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 08:26:47] 2025-12-16 07:26:03,071 | INFO     | collected zombie processes
[2025-12-16 08:26:47] 2025-12-16 07:26:03,071 | INFO     | will attempt to kill all subprocesses of pid=1323564
[2025-12-16 08:26:47] 2025-12-16 07:26:03,115 | INFO     | process IDs to be killed: [1323564] (in reverse order)
[2025-12-16 08:26:47] 2025-12-16 07:26:03,146 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 08:26:47] 2025-12-16 07:26:03,146 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 08:26:47] 2025-12-16 07:26:03,148 | INFO     | did not find any defunct processes belonging to 1323564
[2025-12-16 08:26:47] 2025-12-16 07:26:03,149 | INFO     | did not find any defunct processes belonging to 1323564
[2025-12-16 08:26:47] 2025-12-16 07:26:03,149 | INFO     | ready for new job
[2025-12-16 08:26:47] 2025-12-16 07:26:03,149 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 08:26:47] 2025-12-16 07:26:03,150 | INFO     | ***************************************
[2025-12-16 08:26:47] 2025-12-16 07:26:03,150 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 08:26:47] 2025-12-16 07:26:03,150 | INFO     | ***************************************
[2025-12-16 08:26:47] 2025-12-16 07:26:03,150 | INFO     | 
[2025-12-16 08:26:47] 2025-12-16 07:26:03,151 | INFO     | architecture information:
[2025-12-16 08:26:47] 2025-12-16 07:26:03,151 | INFO     | executing command: cat /etc/os-release
[2025-12-16 08:26:47] 2025-12-16 07:26:03,164 | INFO     | cat /etc/os-release:
[2025-12-16 08:26:47] NAME="CentOS Linux"
[2025-12-16 08:26:47] VERSION="7 (Core)"
[2025-12-16 08:26:47] ID="centos"
[2025-12-16 08:26:47] ID_LIKE="rhel fedora"
[2025-12-16 08:26:47] VERSION_ID="7"
[2025-12-16 08:26:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 08:26:47] ANSI_COLOR="0;31"
[2025-12-16 08:26:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 08:26:47] HOME_URL="https://www.centos.org/"
[2025-12-16 08:26:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 08:26:47] 
[2025-12-16 08:26:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 08:26:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 08:26:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 08:26:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 08:26:47] 
[2025-12-16 08:26:47] 2025-12-16 07:26:03,164 | INFO     | ***************************************
[2025-12-16 08:26:47] 2025-12-16 07:26:03,668 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-16 08:26:47] 2025-12-16 07:26:03,684 | INFO     | sufficient remaining disk space (341281079296 B)
[2025-12-16 08:26:47] 2025-12-16 07:26:03,685 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 08:26:47] 2025-12-16 07:26:03,685 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 08:26:47] 2025-12-16 07:26:03,685 | INFO     | update_server=False
[2025-12-16 08:26:47] 2025-12-16 07:26:03,685 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 08:26:47] 2025-12-16 07:26:03,685 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 08:26:47] 2025-12-16 07:26:03,685 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 08:26:47] 2025-12-16 07:26:03,956 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 08:26:47] 2025-12-16 07:26:03,956 | INFO     | aborting loop
[2025-12-16 08:26:47] 2025-12-16 07:26:04,517 | INFO     | all data control threads have been joined
[2025-12-16 08:26:47] 2025-12-16 07:26:04,679 | INFO     | all payload control threads have been joined
[2025-12-16 08:26:47] 2025-12-16 07:26:04,690 | INFO     | [job] retrieve thread has finished
[2025-12-16 08:26:47] 2025-12-16 07:26:04,691 | INFO     | [job] queue monitor thread has finished
[2025-12-16 08:26:47] 2025-12-16 07:26:04,694 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 08:26:47] 2025-12-16 07:26:04,736 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 08:26:47] 2025-12-16 07:26:04,917 | INFO     | [payload] failed_post thread has finished
[2025-12-16 08:26:47] 2025-12-16 07:26:04,962 | INFO     | [job] job monitor thread has finished
[2025-12-16 08:26:47] 2025-12-16 07:26:04,968 | INFO     | [data] copytool_in thread has finished
[2025-12-16 08:26:47] 2025-12-16 07:26:05,007 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 08:26:47] 2025-12-16 07:26:05,153 | INFO     | all job control threads have been joined
[2025-12-16 08:26:47] 2025-12-16 07:26:05,523 | INFO     | [data] control thread has finished
[2025-12-16 08:26:47] 2025-12-16 07:26:05,685 | INFO     | [payload] control thread has finished
[2025-12-16 08:26:47] 2025-12-16 07:26:05,691 | INFO     | [data] copytool_out thread has finished
[2025-12-16 08:26:47] 2025-12-16 07:26:05,841 | INFO     | [payload] validate_post thread has finished
[2025-12-16 08:26:47] 2025-12-16 07:26:06,091 | INFO     | [job] validate thread has finished
[2025-12-16 08:26:47] 2025-12-16 07:26:06,130 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 08:26:47] 2025-12-16 07:26:06,159 | INFO     | [job] control thread has finished
[2025-12-16 08:26:47] 2025-12-16 07:26:08,700 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 08:26:47] 2025-12-16 07:26:14,476 | INFO     | job.realtimelogging is not enabled
[2025-12-16 08:26:47] 2025-12-16 07:26:15,482 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 08:26:47] 2025-12-16 07:26:34,414 | INFO     | PID=1316988 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 08:26:47] 2025-12-16 07:26:34,414 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 08:26:47] 2025-12-16 07:26:34,414 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 08:26:47] 2025-12-16 07:26:34,414 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 08:26:47] 2025-12-16 07:26:40,940 | INFO     | [monitor] cgroup control has ended
[2025-12-16 08:26:47] 2025-12-16 07:26:41,996 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140681892738880)>', '<ExcThread(monitor, started 140681133659904)>']
[2025-12-16 08:26:47] 2025-12-16 07:26:42,457 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 08:26:47] 2025-12-16 07:26:42,457 | INFO     | [monitor] control thread has ended
[2025-12-16 08:26:47] 2025-12-16 07:26:47,021 | INFO     | all workflow threads have been joined
[2025-12-16 08:26:47] 2025-12-16 07:26:47,022 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 08:26:47] 2025-12-16 07:26:47,022 | INFO     | traces error code: 0
[2025-12-16 08:26:47] 2025-12-16 07:26:47,022 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 08:26:47] 2025-12-16 07:26:47,099 [wrapper] ==== pilot stdout END ====
[2025-12-16 08:26:47] 2025-12-16 07:26:47,103 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 08:26:47] 2025-12-16 07:26:47,107 [wrapper] pilotpid: 1316988
[2025-12-16 08:26:47] 2025-12-16 07:26:47,111 [wrapper] Pilot exit status: 0
[2025-12-16 08:26:47] 2025-12-16 07:26:47,122 [wrapper] pandaids: 6929804655
[2025-12-16 08:26:47] 2025-12-16 07:26:47,143 [wrapper] cleanup supervisor_pilot 1335869 1316989
[2025-12-16 08:26:47] 2025-12-16 07:26:47,147 [wrapper] Test setup, not cleaning
[2025-12-16 08:26:47] 2025-12-16 07:26:47,151 [wrapper] apfmon messages muted
[2025-12-16 08:26:47] 2025-12-16 07:26:47,154 [wrapper] ==== wrapper stdout END ====
[2025-12-16 08:26:47] 2025-12-16 07:26:47,157 [wrapper] ==== wrapper stderr END ====
[2025-12-16 08:26:47]  *** Error codes and diagnostics ***
[2025-12-16 08:26:47]     "exeErrorCode": 0,
[2025-12-16 08:26:47]     "exeErrorDiag": "",
[2025-12-16 08:26:47]     "pilotErrorCode": 0,
[2025-12-16 08:26:47]     "pilotErrorDiag": "",
[2025-12-16 08:26:47]  *** Listing of results directory ***
[2025-12-16 08:26:47] total 409660
[2025-12-16 08:26:47] -rw-r--r-- 1 boinc boinc    579449 Dec 15 14:27 pilot3.tar.gz
[2025-12-16 08:26:47] -rwx------ 1 boinc boinc     36322 Dec 15 14:27 runpilot2-wrapper.sh
[2025-12-16 08:26:47] -rw-r--r-- 1 boinc boinc      5112 Dec 15 14:29 queuedata.json
[2025-12-16 08:26:47] -rw-r--r-- 1 boinc boinc       100 Dec 16 06:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 08:26:47] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 06:43 run_atlas
[2025-12-16 08:26:47] -rw-r--r-- 1 boinc boinc       105 Dec 16 06:43 job.xml
[2025-12-16 08:26:47] -rw-r--r-- 2 boinc boinc 203063527 Dec 16 06:43 EVNT.47905905._000021.pool.root.1
[2025-12-16 08:26:47] -rw-r--r-- 2 boinc boinc    592378 Dec 16 06:43 input.tar.gz
[2025-12-16 08:26:47] -rw-r--r-- 2 boinc boinc     15847 Dec 16 06:43 start_atlas.sh
[2025-12-16 08:26:47] drwxrwx--x 2 boinc boinc      4096 Dec 16 06:43 shared
[2025-12-16 08:26:47] -rw-r--r-- 1 boinc boinc         0 Dec 16 06:43 boinc_setup_complete
[2025-12-16 08:26:47] -rw-r--r-- 1 boinc boinc      6370 Dec 16 06:43 init_data.xml
[2025-12-16 08:26:47] -rw-r--r-- 1 boinc boinc         0 Dec 16 06:43 boinc_lockfile
[2025-12-16 08:26:47] -rw-r--r-- 1 boinc boinc      2475 Dec 16 06:43 pandaJob.out
[2025-12-16 08:26:47] -rw------- 1 boinc boinc    994531 Dec 16 06:43 agis_schedconf.cvmfs.json
[2025-12-16 08:26:47] -rw------- 1 boinc boinc   1516240 Dec 16 06:43 agis_ddmendpoints.agis.ALL.json
[2025-12-16 08:26:47] drwx------ 5 boinc boinc      4096 Dec 16 06:43 pilot3
[2025-12-16 08:26:47] -rw------- 1 boinc boinc 210137951 Dec 16 08:25 HITS.47905907._000449.pool.root.1
[2025-12-16 08:26:47] -rw-r--r-- 1 boinc boinc       529 Dec 16 08:25 boinc_task_state.xml
[2025-12-16 08:26:47] -rw------- 1 boinc boinc      1018 Dec 16 08:25 memory_monitor_summary.json
[2025-12-16 08:26:47] -rw------- 1 boinc boinc    300460 Dec 16 08:25 log.47905907._000449.job.log.tgz.1
[2025-12-16 08:26:47] -rw------- 1 boinc boinc      7753 Dec 16 08:26 heartbeat.json
[2025-12-16 08:26:47] -rw-r--r-- 1 boinc boinc        27 Dec 16 08:26 wrapper_checkpoint.txt
[2025-12-16 08:26:47] -rw-r--r-- 1 boinc boinc      8192 Dec 16 08:26 boinc_mmap_file
[2025-12-16 08:26:47] -rw------- 1 boinc boinc        95 Dec 16 08:26 pilot_heartbeat.json
[2025-12-16 08:26:47] -rw------- 1 boinc boinc      4824 Dec 16 08:26 pilotlog.txt
[2025-12-16 08:26:47] -rw------- 1 boinc boinc    892553 Dec 16 08:26 log.47905907._000449.job.log.1
[2025-12-16 08:26:47] -rw------- 1 boinc boinc       357 Dec 16 08:26 output.list
[2025-12-16 08:26:47] -rw-r--r-- 1 boinc boinc       620 Dec 16 08:26 runtime_log
[2025-12-16 08:26:47] -rw------- 1 boinc boinc   1208320 Dec 16 08:26 result.tar.gz
[2025-12-16 08:26:47] -rw-r--r-- 1 boinc boinc      8902 Dec 16 08:26 runtime_log.err
[2025-12-16 08:26:47] -rw------- 1 boinc boinc       660 Dec 16 08:26 LuCMDmNnNp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNbTKDm5h6nIm.diag
[2025-12-16 08:26:47] -rw-r--r-- 1 boinc boinc     11530 Dec 16 08:26 stderr.txt
[2025-12-16 08:26:47] HITS file was successfully produced:
[2025-12-16 08:26:47] -rw------- 1 boinc boinc 210137951 Dec 16 08:25 shared/HITS.pool.root.1
[2025-12-16 08:26:47]  *** Contents of shared directory: ***
[2025-12-16 08:26:47] total 405308
[2025-12-16 08:26:47] -rw-r--r-- 2 boinc boinc 203063527 Dec 16 06:43 ATLAS.root_0
[2025-12-16 08:26:47] -rw-r--r-- 2 boinc boinc    592378 Dec 16 06:43 input.tar.gz
[2025-12-16 08:26:47] -rw-r--r-- 2 boinc boinc     15847 Dec 16 06:43 start_atlas.sh
[2025-12-16 08:26:47] -rw------- 1 boinc boinc 210137951 Dec 16 08:25 HITS.pool.root.1
[2025-12-16 08:26:47] -rw------- 1 boinc boinc   1208320 Dec 16 08:26 result.tar.gz
08:26:49 (1313183): run_atlas exited; CPU time 23461.038969
08:26:49 (1313183): called boinc_finish(0)

</stderr_txt>
]]>

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