Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:06:28 (2453572): wrapper (7.7.26015): starting
10:06:28 (2453572): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 10:06:28] Arguments: --nthreads 4
[2025-12-16 10:06:28] Threads: 4
[2025-12-16 10:06:28] Checking for CVMFS
[2025-12-16 10:06:28] No cvmfs_config command found, will try listing directly
[2025-12-16 10:06:28] CVMFS is ok
[2025-12-16 10:06:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 10:06:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 10:06:29] Further information can be found at the LHC@home message board.
[2025-12-16 10:06:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 10:06:29] Checking for apptainer binary...
[2025-12-16 10:06:29] which: no apptainer in ((null))
[2025-12-16 10:06:29] apptainer is not installed, using version from CVMFS
[2025-12-16 10:06:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 10:06:29] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot108/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-12-16 10:06:29] apptainer works
[2025-12-16 10:06:29] Set ATHENA_PROC_NUMBER=4
[2025-12-16 10:06:29] Set ATHENA_CORE_NUMBER=4
[2025-12-16 10:06:29] Starting ATLAS job with PandaID=6929783954
[2025-12-16 10:06:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot108/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 14:09:01]  *** The last 200 lines of the pilot log: ***
[2025-12-16 14:09:01] 2025-12-16 13:00:19,312 | INFO     | sum of square deviations: 3485088600.0
[2025-12-16 14:09:01] 2025-12-16 13:00:19,314 | INFO     | sum of deviations: 32109030458.5
[2025-12-16 14:09:01] 2025-12-16 13:00:19,314 | INFO     | mean x: 1765882839.5
[2025-12-16 14:09:01] 2025-12-16 13:00:19,314 | INFO     | mean y: 2313231.6651785714
[2025-12-16 14:09:01] 2025-12-16 13:00:19,314 | INFO     | intersect: -16267226050.534983
[2025-12-16 14:09:01] 2025-12-16 13:00:19,315 | INFO     | chi2: 1.2814589112127774
[2025-12-16 14:09:01] 2025-12-16 13:00:19,315 | INFO     | current chi2=1.2814589112127774 (change=-0.03516628564983176 %)
[2025-12-16 14:09:01] 2025-12-16 13:00:19,315 | INFO     | right removable region: 223
[2025-12-16 14:09:01] 2025-12-16 13:00:19,315 | INFO     | sum of square deviations: 3485088600.0
[2025-12-16 14:09:01] 2025-12-16 13:00:19,317 | INFO     | sum of deviations: 4627892398.5
[2025-12-16 14:09:01] 2025-12-16 13:00:19,317 | INFO     | mean x: 1765883144.5
[2025-12-16 14:09:01] 2025-12-16 13:00:19,317 | INFO     | mean y: 2331775.558035714
[2025-12-16 14:09:01] 2025-12-16 13:00:19,317 | INFO     | intersect: -2342606364.9158754
[2025-12-16 14:09:01] 2025-12-16 13:00:19,317 | INFO     | chi2: 0.005690016342312088
[2025-12-16 14:09:01] 2025-12-16 13:00:19,317 | INFO     | current chi2=0.005690016342312088 (change=99.55581741561065 %)
[2025-12-16 14:09:01] 2025-12-16 13:00:19,318 | INFO     | sum of square deviations: 3256879670.0
[2025-12-16 14:09:01] 2025-12-16 13:00:19,319 | INFO     | sum of deviations: 4074844225.0
[2025-12-16 14:09:01] 2025-12-16 13:00:19,319 | INFO     | mean x: 1765883297.0
[2025-12-16 14:09:01] 2025-12-16 13:00:19,319 | INFO     | mean y: 2332127.6529680365
[2025-12-16 14:09:01] 2025-12-16 13:00:19,320 | INFO     | intersect: -2207052339.659701
[2025-12-16 14:09:01] 2025-12-16 13:00:19,320 | INFO     | chi2: 0.001448207357367947
[2025-12-16 14:09:01] 2025-12-16 13:00:19,320 | INFO     | current chi2=0.001448207357367947 (change=74.54827420092293 %)
[2025-12-16 14:09:01] 2025-12-16 13:00:19,320 | INFO     | sum of square deviations: 3038856977.5
[2025-12-16 14:09:01] 2025-12-16 13:00:19,322 | INFO     | sum of deviations: 2981752956.0
[2025-12-16 14:09:01] 2025-12-16 13:00:19,322 | INFO     | mean x: 1765883449.5
[2025-12-16 14:09:01] 2025-12-16 13:00:19,322 | INFO     | mean y: 2332891.140186916
[2025-12-16 14:09:01] 2025-12-16 13:00:19,322 | INFO     | intersect: -1730367342.6924207
[2025-12-16 14:09:01] 2025-12-16 13:00:19,322 | INFO     | chi2: 0.0008208853790472286
[2025-12-16 14:09:01] 2025-12-16 13:00:19,322 | INFO     | current chi2=0.0008208853790472286 (change=43.31713791738004 %)
[2025-12-16 14:09:01] 2025-12-16 13:00:19,323 | INFO     | sum of square deviations: 2830787960.0
[2025-12-16 14:09:01] 2025-12-16 13:00:19,324 | INFO     | sum of deviations: 2271077823.999999
[2025-12-16 14:09:01] 2025-12-16 13:00:19,324 | INFO     | mean x: 1765883602.0
[2025-12-16 14:09:01] 2025-12-16 13:00:19,324 | INFO     | mean y: 2333410.6602870813
[2025-12-16 14:09:01] 2025-12-16 13:00:19,325 | INFO     | intersect: -1414395480.7072742
[2025-12-16 14:09:01] 2025-12-16 13:00:19,325 | INFO     | chi2: 0.0005526202346173088
[2025-12-16 14:09:01] 2025-12-16 13:00:19,325 | INFO     | current chi2=0.0005526202346173088 (change=32.6799759475903 %)
[2025-12-16 14:09:01] 2025-12-16 13:00:19,325 | INFO     | sum of square deviations: 2632440055.0
[2025-12-16 14:09:01] 2025-12-16 13:00:19,327 | INFO     | sum of deviations: 1752719191.5
[2025-12-16 14:09:01] 2025-12-16 13:00:19,327 | INFO     | mean x: 1765883754.5
[2025-12-16 14:09:01] 2025-12-16 13:00:19,327 | INFO     | mean y: 2333808.8970588236
[2025-12-16 14:09:01] 2025-12-16 13:00:19,327 | INFO     | intersect: -1173418831.9243195
[2025-12-16 14:09:01] 2025-12-16 13:00:19,327 | INFO     | chi2: 0.00042208039596572394
[2025-12-16 14:09:01] 2025-12-16 13:00:19,327 | INFO     | current chi2=0.00042208039596572394 (change=23.62197952125009 %)
[2025-12-16 14:09:01] 2025-12-16 13:00:19,328 | INFO     | left removable region: 50
[2025-12-16 14:09:01] 2025-12-16 13:00:19,328 | INFO     | sum of square deviations: 1605470102.0
[2025-12-16 14:09:01] 2025-12-16 13:00:19,329 | INFO     | sum of deviations: 730291146.0
[2025-12-16 14:09:01] 2025-12-16 13:00:19,329 | INFO     | mean x: 1765884334.0
[2025-12-16 14:09:01] 2025-12-16 13:00:19,329 | INFO     | mean y: 2334277.0
[2025-12-16 14:09:01] 2025-12-16 13:00:19,329 | INFO     | intersect: -800925585.8736761
[2025-12-16 14:09:01] 2025-12-16 13:00:19,329 | INFO     | chi2: 0.00017397651187251738
[2025-12-16 14:09:01] 2025-12-16 13:00:19,330 | INFO     | current memory leak: 0.45 B/s (using 173 data points, chi2=0.00)
[2025-12-16 14:09:01] 2025-12-16 13:00:19,330 | INFO     | could have reported an average CPU frequency of 2677 MHz (11 samples)
[2025-12-16 14:09:01] 2025-12-16 13:00:19,330 | INFO     | ..............................
[2025-12-16 14:09:01] 2025-12-16 13:00:19,330 | INFO     | . Timing measurements:
[2025-12-16 14:09:01] 2025-12-16 13:00:19,331 | INFO     | . get job = 0 s
[2025-12-16 14:09:01] 2025-12-16 13:00:19,331 | INFO     | . initial setup = 1 s
[2025-12-16 14:09:01] 2025-12-16 13:00:19,331 | INFO     | . payload setup = 8 s
[2025-12-16 14:09:01] 2025-12-16 13:00:19,331 | INFO     | . stage-in = 0 s
[2025-12-16 14:09:01] 2025-12-16 13:00:19,331 | INFO     | . payload execution = 13973 s
[2025-12-16 14:09:01] 2025-12-16 13:00:19,331 | INFO     | . stage-out = 1 s
[2025-12-16 14:09:01] 2025-12-16 13:00:19,331 | INFO     | . log creation = 0 s
[2025-12-16 14:09:01] 2025-12-16 13:00:19,331 | INFO     | ..............................
[2025-12-16 14:09:01] 2025-12-16 13:00:19,426 | INFO     | 
[2025-12-16 14:09:01] 2025-12-16 13:00:19,426 | INFO     | job summary report
[2025-12-16 14:09:01] 2025-12-16 13:00:19,426 | INFO     | --------------------------------------------------
[2025-12-16 14:09:01] 2025-12-16 13:00:19,427 | INFO     | PanDA job id: 6929783954
[2025-12-16 14:09:01] 2025-12-16 13:00:19,427 | INFO     | task id: 47898763
[2025-12-16 14:09:01] 2025-12-16 13:00:19,427 | INFO     | errors: (none)
[2025-12-16 14:09:01] 2025-12-16 13:00:19,427 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 14:09:01] 2025-12-16 13:00:19,427 | INFO     | pilot state: finished 
[2025-12-16 14:09:01] 2025-12-16 13:00:19,427 | INFO     | transexitcode: 0
[2025-12-16 14:09:01] 2025-12-16 13:00:19,427 | INFO     | exeerrorcode: 0
[2025-12-16 14:09:01] 2025-12-16 13:00:19,427 | INFO     | exeerrordiag: 
[2025-12-16 14:09:01] 2025-12-16 13:00:19,427 | INFO     | exitcode: 0
[2025-12-16 14:09:01] 2025-12-16 13:00:19,427 | INFO     | exitmsg: OK
[2025-12-16 14:09:01] 2025-12-16 13:00:19,427 | INFO     | cpuconsumptiontime: 53475 s
[2025-12-16 14:09:01] 2025-12-16 13:00:19,427 | INFO     | nevents: 400
[2025-12-16 14:09:01] 2025-12-16 13:00:19,427 | INFO     | neventsw: 0
[2025-12-16 14:09:01] 2025-12-16 13:00:19,427 | INFO     | pid: 2472990
[2025-12-16 14:09:01] 2025-12-16 13:00:19,428 | INFO     | pgrp: 2472990
[2025-12-16 14:09:01] 2025-12-16 13:00:19,428 | INFO     | corecount: 4
[2025-12-16 14:09:01] 2025-12-16 13:00:19,428 | INFO     | event service: False
[2025-12-16 14:09:01] 2025-12-16 13:00:19,428 | INFO     | sizes: {0: 2283799, 1: 2283998, 8: 2284260, 11: 2284288, 13986: 2315398, 13988: 2324420, 13990: 2324604, 13998: 2324798}
[2025-12-16 14:09:01] 2025-12-16 13:00:19,428 | INFO     | --------------------------------------------------
[2025-12-16 14:09:01] 2025-12-16 13:00:19,428 | INFO     | 
[2025-12-16 14:09:01] 2025-12-16 13:00:19,428 | INFO     | executing command: ls -lF /scratch/boinc/var/slot108/slots/0
[2025-12-16 14:09:01] 2025-12-16 13:00:19,461 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 14:09:01] 2025-12-16 13:00:19,462 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 14:09:01] 2025-12-16 13:00:19,462 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 14:09:01] 2025-12-16 13:00:19,462 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 14:09:01] 2025-12-16 13:00:19,462 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 14:09:01] 2025-12-16 13:00:19,462 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 14:09:01] 2025-12-16 13:00:19,462 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 14:09:01] 2025-12-16 13:00:19,462 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 14:09:01] 2025-12-16 13:00:19,462 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 14:09:01] 2025-12-16 13:00:19,462 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 14:09:01] 2025-12-16 13:00:19,463 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 14:09:01] 2025-12-16 13:00:19,463 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 14:09:01] 2025-12-16 13:00:19,463 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 14:09:01] 2025-12-16 13:00:19,463 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 14:09:01] 2025-12-16 13:00:19,463 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 14:09:01] 2025-12-16 13:00:19,463 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 14:09:01] 2025-12-16 13:00:19,463 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 14:09:01] 2025-12-16 13:00:19,463 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 14:09:01] 2025-12-16 13:00:19,463 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 14:09:01] 2025-12-16 13:00:19,463 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 14:09:01] 2025-12-16 13:00:19,464 | INFO     | job 6929783954 has completed (purged errors)
[2025-12-16 14:09:01] 2025-12-16 13:00:19,464 | INFO     | overall cleanup function is called
[2025-12-16 14:09:01] 2025-12-16 13:00:20,473 | INFO     | --- collectZombieJob: --- 10, [2472990]
[2025-12-16 14:09:01] 2025-12-16 13:00:20,474 | INFO     | zombie collector waiting for pid 2472990
[2025-12-16 14:09:01] 2025-12-16 13:00:20,474 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 14:09:01] 2025-12-16 13:00:20,474 | INFO     | collected zombie processes
[2025-12-16 14:09:01] 2025-12-16 13:00:20,474 | INFO     | will attempt to kill all subprocesses of pid=2472990
[2025-12-16 14:09:01] 2025-12-16 13:00:21,332 | INFO     | process IDs to be killed: [2472990] (in reverse order)
[2025-12-16 14:09:01] 2025-12-16 13:00:21,611 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 14:09:01] 2025-12-16 13:00:21,611 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 14:09:01] 2025-12-16 13:00:21,645 | INFO     | did not find any defunct processes belonging to 2472990
[2025-12-16 14:09:01] 2025-12-16 13:00:21,677 | INFO     | did not find any defunct processes belonging to 2472990
[2025-12-16 14:09:01] 2025-12-16 13:00:21,677 | INFO     | ready for new job
[2025-12-16 14:09:01] 2025-12-16 13:00:21,678 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 14:09:01] 2025-12-16 13:00:21,680 | INFO     | ***************************************
[2025-12-16 14:09:01] 2025-12-16 13:00:21,681 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 14:09:01] 2025-12-16 13:00:21,681 | INFO     | ***************************************
[2025-12-16 14:09:01] 2025-12-16 13:00:21,681 | INFO     | 
[2025-12-16 14:09:01] 2025-12-16 13:00:21,689 | INFO     | architecture information:
[2025-12-16 14:09:01] 2025-12-16 13:00:21,690 | INFO     | executing command: cat /etc/os-release
[2025-12-16 14:09:01] 2025-12-16 13:00:21,715 | INFO     | cat /etc/os-release:
[2025-12-16 14:09:01] NAME="CentOS Linux"
[2025-12-16 14:09:01] VERSION="7 (Core)"
[2025-12-16 14:09:01] ID="centos"
[2025-12-16 14:09:01] ID_LIKE="rhel fedora"
[2025-12-16 14:09:01] VERSION_ID="7"
[2025-12-16 14:09:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 14:09:01] ANSI_COLOR="0;31"
[2025-12-16 14:09:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 14:09:01] HOME_URL="https://www.centos.org/"
[2025-12-16 14:09:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 14:09:01] 
[2025-12-16 14:09:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 14:09:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 14:09:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 14:09:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 14:09:01] 
[2025-12-16 14:09:01] 2025-12-16 13:00:21,716 | INFO     | ***************************************
[2025-12-16 14:09:01] 2025-12-16 13:00:22,219 | INFO     | executing command: df -mP /scratch/boinc/var/slot108/slots/0
[2025-12-16 14:09:01] 2025-12-16 13:00:22,246 | INFO     | sufficient remaining disk space (3333147328512 B)
[2025-12-16 14:09:01] 2025-12-16 13:00:22,247 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 14:09:01] 2025-12-16 13:00:22,247 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 14:09:01] 2025-12-16 13:00:22,247 | INFO     | update_server=False
[2025-12-16 14:09:01] 2025-12-16 13:00:22,247 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 14:09:01] 2025-12-16 13:00:22,248 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 14:09:01] 2025-12-16 13:00:22,493 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 14:09:01] 2025-12-16 13:00:22,683 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-16 14:09:01] 2025-12-16 13:00:22,683 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-16 14:09:01] 2025-12-16 13:00:22,683 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 14:09:01] 2025-12-16 13:00:22,683 | INFO     | will abort loop
[2025-12-16 14:09:01] 2025-12-16 13:00:22,716 | INFO     | all data control threads have been joined
[2025-12-16 14:09:01] 2025-12-16 13:00:22,846 | INFO     | all job control threads have been joined
[2025-12-16 14:09:01] 2025-12-16 13:00:22,914 | INFO     | all payload control threads have been joined
[2025-12-16 14:09:01] 2025-12-16 13:00:23,254 | INFO     | [job] retrieve thread has finished
[2025-12-16 14:09:01] 2025-12-16 13:00:23,362 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 14:09:01] 2025-12-16 13:00:23,576 | INFO     | [payload] validate_post thread has finished
[2025-12-16 14:09:01] 2025-12-16 13:00:23,576 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 14:09:01] 2025-12-16 13:00:23,689 | INFO     | [job] job monitor thread has finished
[2025-12-16 14:09:01] 2025-12-16 13:00:23,722 | INFO     | [data] control thread has finished
[2025-12-16 14:09:01] 2025-12-16 13:00:23,852 | INFO     | [job] control thread has finished
[2025-12-16 14:09:01] 2025-12-16 13:00:23,919 | INFO     | [payload] control thread has finished
[2025-12-16 14:09:01] 2025-12-16 13:00:24,175 | INFO     | [job] validate thread has finished
[2025-12-16 14:09:01] 2025-12-16 13:00:24,435 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 14:09:01] 2025-12-16 13:00:24,502 | INFO     | [data] copytool_out thread has finished
[2025-12-16 14:09:01] 2025-12-16 13:00:24,524 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 14:09:01] 2025-12-16 13:00:24,525 | INFO     | [data] copytool_in thread has finished
[2025-12-16 14:09:01] 2025-12-16 13:00:24,571 | INFO     | [payload] failed_post thread has finished
[2025-12-16 14:09:01] 2025-12-16 13:00:25,440 | INFO     | [job] queue monitor thread has finished
[2025-12-16 14:09:01] 2025-12-16 13:00:26,254 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 14:09:01] 2025-12-16 13:00:32,885 | INFO     | job.realtimelogging is not enabled
[2025-12-16 14:09:01] 2025-12-16 13:00:33,890 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 14:09:01] 2025-12-16 13:00:53,141 | INFO     | PID=2457957 has CPU usage=10.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-16 14:09:01] 2025-12-16 13:00:53,141 | INFO     | .. there are 11 such processes running
[2025-12-16 14:09:01] 2025-12-16 13:00:53,142 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 14:09:01] 2025-12-16 13:00:53,142 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 14:09:01] 2025-12-16 13:00:53,142 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 14:09:01] 2025-12-16 13:01:06,306 | INFO     | [monitor] cgroup control has ended
[2025-12-16 14:09:01] 2025-12-16 13:01:08,313 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23164829103936)>', '<ExcThread(monitor, started 23164589405952)>']
[2025-12-16 14:09:01] 2025-12-16 13:01:09,217 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 14:09:01] 2025-12-16 13:01:09,218 | INFO     | [monitor] control thread has ended
[2025-12-16 14:09:01] 2025-12-16 13:01:13,338 | INFO     | all workflow threads have been joined
[2025-12-16 14:09:01] 2025-12-16 13:01:13,338 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 14:09:01] 2025-12-16 13:01:13,339 | INFO     | traces error code: 0
[2025-12-16 14:09:01] 2025-12-16 13:01:13,339 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 14:09:01] 2025-12-16 13:01:13,515 [wrapper] ==== pilot stdout END ====
[2025-12-16 14:09:01] 2025-12-16 13:01:13,519 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 14:09:01] 2025-12-16 13:01:13,522 [wrapper] pilotpid: 2457957
[2025-12-16 14:09:01] 2025-12-16 13:01:13,526 [wrapper] Pilot exit status: 0
[2025-12-16 14:09:01] 2025-12-16 13:01:13,539 [wrapper] pandaids: 6929783954
[2025-12-16 14:09:01] 2025-12-16 13:01:13,704 [wrapper] cleanup supervisor_pilot 2943319 2457958
[2025-12-16 14:09:01] 2025-12-16 13:01:13,708 [wrapper] Test setup, not cleaning
[2025-12-16 14:09:01] 2025-12-16 13:01:13,712 [wrapper] apfmon messages muted
[2025-12-16 14:09:01] 2025-12-16 13:01:13,719 [wrapper] ==== wrapper stdout END ====
[2025-12-16 14:09:01] 2025-12-16 13:01:13,723 [wrapper] ==== wrapper stderr END ====
[2025-12-16 14:09:01]  *** Error codes and diagnostics ***
[2025-12-16 14:09:01]     "exeErrorCode": 0,
[2025-12-16 14:09:01]     "exeErrorDiag": "",
[2025-12-16 14:09:01]     "pilotErrorCode": 0,
[2025-12-16 14:09:01]     "pilotErrorDiag": "",
[2025-12-16 14:09:01]  *** Listing of results directory ***
[2025-12-16 14:09:01] total 450708
[2025-12-16 14:09:01] -rw-r--r-- 1 boinc boinc    579449 Dec 15 14:27 pilot3.tar.gz
[2025-12-16 14:09:01] -rwx------ 1 boinc boinc     36322 Dec 15 14:27 runpilot2-wrapper.sh
[2025-12-16 14:09:01] -rw-r--r-- 1 boinc boinc      5112 Dec 15 14:27 queuedata.json
[2025-12-16 14:09:01] -rw-r--r-- 1 boinc boinc       100 Dec 16 10:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 14:09:01] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 10:06 run_atlas
[2025-12-16 14:09:01] -rw-r--r-- 1 boinc boinc       105 Dec 16 10:06 job.xml
[2025-12-16 14:09:01] -rw-r--r-- 1 boinc boinc      6691 Dec 16 10:06 init_data.xml
[2025-12-16 14:09:01] -rw-r--r-- 2 boinc boinc 227745120 Dec 16 10:06 EVNT.47898761._000675.pool.root.1
[2025-12-16 14:09:01] -rw-r--r-- 2 boinc boinc     15847 Dec 16 10:06 start_atlas.sh
[2025-12-16 14:09:01] drwxrwx--x 2 boinc boinc      4096 Dec 16 10:06 shared
[2025-12-16 14:09:01] -rw-r--r-- 2 boinc boinc    592395 Dec 16 10:06 input.tar.gz
[2025-12-16 14:09:01] -rw-r--r-- 1 boinc boinc         0 Dec 16 10:06 boinc_lockfile
[2025-12-16 14:09:01] -rw-r--r-- 1 boinc boinc      2508 Dec 16 10:06 pandaJob.out
[2025-12-16 14:09:01] -rw------- 1 boinc boinc    994528 Dec 16 10:06 agis_schedconf.cvmfs.json
[2025-12-16 14:09:01] drwx------ 5 boinc boinc      4096 Dec 16 10:06 pilot3
[2025-12-16 14:09:01] -rw------- 1 boinc boinc 225147044 Dec 16 13:59 HITS.47898763._016900.pool.root.1
[2025-12-16 14:09:01] -rw-r--r-- 1 boinc boinc       528 Dec 16 13:59 boinc_task_state.xml
[2025-12-16 14:09:01] -rw------- 1 boinc boinc      1028 Dec 16 14:00 memory_monitor_summary.json
[2025-12-16 14:09:01] -rw------- 1 boinc boinc   1516240 Dec 16 14:00 agis_ddmendpoints.agis.ALL.json
[2025-12-16 14:09:01] -rw------- 1 boinc boinc    412436 Dec 16 14:00 log.47898763._016900.job.log.tgz.1
[2025-12-16 14:09:01] -rw------- 1 boinc boinc      7784 Dec 16 14:00 heartbeat.json
[2025-12-16 14:09:01] -rw------- 1 boinc boinc        95 Dec 16 14:00 pilot_heartbeat.json
[2025-12-16 14:09:01] -rw------- 1 boinc boinc      5095 Dec 16 14:01 pilotlog.txt
[2025-12-16 14:09:01] -rw------- 1 boinc boinc   1947482 Dec 16 14:01 log.47898763._016900.job.log.1
[2025-12-16 14:09:01] -rw------- 1 boinc boinc       357 Dec 16 14:01 output.list
[2025-12-16 14:09:01] -rw-r--r-- 1 boinc boinc       620 Dec 16 14:01 runtime_log
[2025-12-16 14:09:01] -rw------- 1 boinc boinc   2375680 Dec 16 14:01 result.tar.gz
[2025-12-16 14:09:01] -rw-r--r-- 1 boinc boinc      9223 Dec 16 14:01 runtime_log.err
[2025-12-16 14:09:01] -rw------- 1 boinc boinc       666 Dec 16 14:01 K4fMDmrmNp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4zXKDmzPIGmn.diag
[2025-12-16 14:09:01] -rw-r--r-- 1 boinc boinc        26 Dec 16 14:08 wrapper_checkpoint.txt
[2025-12-16 14:09:01] -rw-r--r-- 1 boinc boinc      8192 Dec 16 14:09 boinc_mmap_file
[2025-12-16 14:09:01] -rw-r--r-- 1 boinc boinc     20757 Dec 16 14:09 stderr.txt
[2025-12-16 14:09:01] HITS file was successfully produced:
[2025-12-16 14:09:01] -rw------- 1 boinc boinc 225147044 Dec 16 13:59 shared/HITS.pool.root.1
[2025-12-16 14:09:01]  *** Contents of shared directory: ***
[2025-12-16 14:09:01] total 445204
[2025-12-16 14:09:01] -rw-r--r-- 2 boinc boinc 227745120 Dec 16 10:06 ATLAS.root_0
[2025-12-16 14:09:01] -rw-r--r-- 2 boinc boinc     15847 Dec 16 10:06 start_atlas.sh
[2025-12-16 14:09:01] -rw-r--r-- 2 boinc boinc    592395 Dec 16 10:06 input.tar.gz
[2025-12-16 14:09:01] -rw------- 1 boinc boinc 225147044 Dec 16 13:59 HITS.pool.root.1
[2025-12-16 14:09:01] -rw------- 1 boinc boinc   2375680 Dec 16 14:01 result.tar.gz
14:09:02 (2453572): run_atlas exited; CPU time 54455.846464
14:09:02 (2453572): called boinc_finish(0)

</stderr_txt>
]]>

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